Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006389

Physical Location & Seq

Genomic Coordinates Reverse (-)

2097045 .. 2098230

Gene Structure 1186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031104

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGAACCCCTCAAACGGTGTGGATTCTCGTCGCCGGAAAACGACGTCGTACCGGCGCCACACTCACCGGCCTCCGTCCAGTCCACTTCAGCACTGGAAGCTCCACGACGACAAATCCACCGGAGCCTCCGAGGCCTCTGCTCGGAAGCTCGCCGCCGGGCTCTGGCAGCTGCGCTTCAGCGAAGTTTCATGGGGTGCAGAGCTCAACTCTGGTTCTGATGATCATCTTCGAGCTCACCTTGAGCAAGAACATGGATGTTCAGTGGTTCATGTTTTGAATGGATTAATTAGCATTGGTTTGGGAATGGTTTTGAGGTCATGTTTGAACTCTGATGTTGTTTTTATTTTGGTTTTTTTTTTGCTTGAATCGTCTTTGGGGTGTTCCAAATCGGGATTGGAGAGGGCAACAAAGTGGGATGCTTGCTGCTGGAATGAATCGGCTGAAATTTGTGGGGTTTATATGAAAGATTGTCGAGTGAATACTGTGTCTATGGTTTCGGCAGTGAATGATGAACTACTGAAAGCTAGATTGAGCATTCGAGAGCTTGAAGCTAAGCGGAGGTCTTTCAGGAAGAGAGTCAGACAATTTTTGAGGAAGCTTGAAGAGGAAAGAGTGTTGCAGAAGCGCAGAGAACGCCAGAGAGATCGTGCGGTTATTAAGGAGTTGATGAAAGAACTAAGCAGGGAAAGGAGGAGTCGTCAACGGATGGAAAATCTTAGCACCAATCTGGTCAGTCGGTTAGCCAATGCAAAGTTGTCTGCAGACCAGTTCATGAAAACGTATGAGGAAGAGAAACAAAACAGAAGGTTCATGGAACAAGTTTGTAGCGAACTAGCTGAAAACATTGGAGAGAACAAGGCTGAATTGAAGGCGTTGAAAAGAGAATCCATGAAAATTATTGATGAACTGGAAGAAGAGAGAAAGATGCTGCAGATGACTGAGGCTTGGCGTGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

320

Amino Acids

37.1

Weight (kDa)

9.34

Isoelectric Point (pI)

61.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006389)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02210
malus_domestica	MD05G1345300.v1.1
prunus_persica	Prupe.4G021500_v2.0.a1
pyrus_communis	pycom05g31420
rosa_chinensis	RchiOBHm_Chr5g0003281
rosa_laevigata	RLG00000018061 RLG00000031103 RLG00000031104 RLG00000031121
rosa_multiflora	Rmu_co8274905.1_g000001 Rmu_sc0002494.1_g000002 Rmu_sc0002494.1_g000004 Rmu_sc0010917.1_g000009 Rmu_sc0010917.1_g000010
rosa_roxburghii	Rroxscaffold_1G00072680
rosa_rugosa	Rorug04G0401900 Rorug04G0402400
rosa_samantha	Rh5AG028400 Rh5AG028500 Rh5BG028600 Rh5CG030800 Rh5CG030900 Rh5DG027600 Rh5DG029000 Rh5DG029100
rosa_wichuraiana	Rw5G002650 Rw5G002700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	54
AciI	CCGC	3 cut(s)	153, 556, 650
AcsI	RAATTY	1 cut(s)	444
AcuI	CTGAAG	2 cut(s)	71, 160
AcyI	GRCGYC	2 cut(s)	44, 55
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	3 cut(s)	14, 141, 162
AgsI	TTSAA	7 cut(s)	277, 325, 365, 548, 602, 868, 877
Alw21I	GWGCWC	2 cut(s)	204, 235
AoxI	GGCC	2 cut(s)	68, 132
ApeKI	GCWGC	4 cut(s)	166, 169, 423, 928
ApoI	RAATTY	1 cut(s)	444
AseI	ATTAAT	1 cut(s)	284
AspLEI	GCGC	3 cut(s)	57, 174, 627
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	2 cut(s)	56, 227
BanI	GGYRCC	1 cut(s)	54
BanII	GRGCYC	3 cut(s)	162, 204, 235
Bbv12I	GWGCWC	2 cut(s)	204, 235
BbvI	GCAGC	4 cut(s)	156, 178, 410, 915
BccI	CCATC	1 cut(s)	700
BcgI	CGANNNNNNTGC	2 cut(s)	119, 153
BclI	TGATCA	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	157
BfaI	CTAG	2 cut(s)	525, 833
BfmI	CTRYAG	2 cut(s)	759, 929
BfoI	RGCGCY	1 cut(s)	58
BglI	GCCNNNNNGGC	1 cut(s)	131
BisI	GCNGC	5 cut(s)	153, 167, 170, 424, 929
BlpI	GCTNAGC	1 cut(s)	552
BlsI	GCNGC	5 cut(s)	154, 168, 171, 425, 930
Bme1390I	CCNGG	1 cut(s)	157
BmiI	GGNNCC	2 cut(s)	56, 124
BmrFI	CCNGG	1 cut(s)	157
BmsI	GCATC	2 cut(s)	406, 915
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
Bpu1102I	GCTNAGC	1 cut(s)	552
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	157
BsaBI	GATNNNNATC	1 cut(s)	222
BsaHI	GRCGYC	2 cut(s)	44, 55
BsaJI	CCNNGG	1 cut(s)	129
BsaWI	WCCGGW	1 cut(s)	119
BsaXI	ACNNNNNCTCC	2 cut(s)	682, 712
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 141, 162
Bse118I	RCCGGY	2 cut(s)	51, 66
Bse1I	ACTGG	4 cut(s)	78, 98, 766, 912
Bse8I	GATNNNNATC	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	3 cut(s)	260, 421, 711
BseJI	GATNNNNATC	1 cut(s)	222
BseLI	CCNNNNNNNGG	3 cut(s)	14, 141, 162
BseMII	CTCAG	1 cut(s)	930
BseNI	ACTGG	4 cut(s)	78, 98, 766, 912
BseRI	GAGGAG	1 cut(s)	706
BseXI	GCAGC	4 cut(s)	156, 178, 410, 915
BsgI	GTGCAG	1 cut(s)	216
BshFI	GGCC	2 cut(s)	70, 134
BshNI	GGYRCC	1 cut(s)	54
BsiHKAI	GWGCWC	2 cut(s)	204, 235
BsiSI	CCGG	5 cut(s)	34, 52, 67, 120, 156
BslI	CCNNNNNNNGG	3 cut(s)	14, 141, 162
BsmI	GAATGC	1 cut(s)	534
BsnI	GGCC	2 cut(s)	70, 134
Bsp1286I	GDGCHC	3 cut(s)	162, 204, 235
Bsp143I	GATC	2 cut(s)	220, 643
Bsp1720I	GCTNAGC	1 cut(s)	552
BspACI	CCGC	3 cut(s)	153, 556, 650
BspANI	GGCC	2 cut(s)	70, 134
BspCNI	CTCAG	1 cut(s)	931
BspHI	TCATGA	1 cut(s)	771
BspLI	GGNNCC	2 cut(s)	56, 124
BspMAI	CTGCAG	2 cut(s)	763, 933
BspT107I	GGYRCC	1 cut(s)	54
BsrFI	RCCGGY	2 cut(s)	51, 66
BsrI	ACTGG	4 cut(s)	78, 98, 766, 912
BssAI	RCCGGY	2 cut(s)	51, 66
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	2 cut(s)	220, 643
BssNI	GRCGYC	2 cut(s)	44, 55
Bst4CI	ACNGT	2 cut(s)	17, 484
Bst6I	CTCTTC	4 cut(s)	566, 597, 783, 909
BstACI	GRCGYC	2 cut(s)	44, 55
BstC8I	GCNNGC	2 cut(s)	150, 421
BstDEI	CTNAG	4 cut(s)	552, 677, 716, 939
BstF5I	GGATG	3 cut(s)	260, 421, 711
BstH2I	RGCGCY	1 cut(s)	58
BstHHI	GCGC	3 cut(s)	57, 174, 627
BstKTI	GATC	2 cut(s)	223, 646
BstMBI	GATC	2 cut(s)	220, 643
BstMWI	GCNNNNNNNGC	4 cut(s)	97, 131, 166, 633
BstSCI	CCNGG	1 cut(s)	155
BstSFI	CTRYAG	2 cut(s)	759, 929
BstV1I	GCAGC	4 cut(s)	156, 178, 410, 915
BsuRI	GGCC	2 cut(s)	70, 134
BtsCI	GGATG	3 cut(s)	260, 421, 711
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	3 cut(s)	91, 267, 507
Cac8I	GCNNGC	2 cut(s)	150, 421
CciI	TCATGA	1 cut(s)	771
CfoI	GCGC	3 cut(s)	57, 174, 627
Cfr10I	RCCGGY	2 cut(s)	51, 66
Csp6I	GTAC	1 cut(s)	49
CspCI	CAANNNNNGTGG	1 cut(s)	35
CviAII	CATG	7 cut(s)	189, 251, 269, 318, 772, 811, 889
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	4 cut(s)	552, 677, 716, 939
DinI	GGCGCC	1 cut(s)	56
DpnI	GATC	2 cut(s)	222, 645
DpnII	GATC	2 cut(s)	220, 643
Eam1104I	CTCTTC	4 cut(s)	566, 597, 783, 909
EarI	CTCTTC	4 cut(s)	566, 597, 783, 909
Ecl136II	GAGCTC	2 cut(s)	202, 233
Eco147I	AGGCCT	1 cut(s)	134
Eco24I	GRGCYC	3 cut(s)	162, 204, 235
Eco53kI	GAGCTC	2 cut(s)	202, 233
Eco57I	CTGAAG	2 cut(s)	71, 160
EcoICRI	GAGCTC	2 cut(s)	202, 233
EcoT38I	GRGCYC	3 cut(s)	162, 204, 235
EgeI	GGCGCC	1 cut(s)	56
EheI	GGCGCC	1 cut(s)	56
FaeI	CATG	7 cut(s)	192, 254, 272, 321, 775, 814, 892
FatI	CATG	7 cut(s)	188, 250, 268, 317, 771, 810, 888
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	5 cut(s)	153, 167, 170, 424, 929
FokI	GGATG	3 cut(s)	267, 428, 718
FriOI	GRGCYC	3 cut(s)	162, 204, 235
Fsp4HI	GCNGC	5 cut(s)	153, 167, 170, 424, 929
FspBI	CTAG	2 cut(s)	525, 833
GlaI	GCGC	3 cut(s)	56, 173, 626
GluI	GCNGC	5 cut(s)	153, 167, 170, 424, 929
HaeII	RGCGCY	1 cut(s)	58
HaeIII	GGCC	2 cut(s)	70, 134
HapII	CCGG	5 cut(s)	34, 52, 67, 120, 156
HhaI	GCGC	3 cut(s)	57, 174, 627
Hin1I	GRCGYC	2 cut(s)	44, 55
Hin1II	CATG	7 cut(s)	192, 254, 272, 321, 775, 814, 892
Hin6I	GCGC	3 cut(s)	55, 172, 625
HinP1I	GCGC	3 cut(s)	55, 172, 625
HincII	GTYRAC	1 cut(s)	701
HindII	GTYRAC	1 cut(s)	701
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	6 cut(s)	23, 365, 434, 576, 694, 884
HpaII	CCGG	5 cut(s)	34, 52, 67, 120, 156
HphI	GGTGA	2 cut(s)	56, 227
Hpy166II	GTNNAC	2 cut(s)	83, 701
Hpy188I	TCNGA	5 cut(s)	130, 144, 217, 331, 581
Hpy188III	TCNNGA	4 cut(s)	390, 539, 568, 772
Hpy8I	GTNNAC	2 cut(s)	83, 701
Hpy99I	CGWCG	4 cut(s)	33, 46, 49, 110
HpyAV	CCTTC	2 cut(s)	798, 862
HpyCH4III	ACNGT	2 cut(s)	17, 484
HpyCH4IV	ACGT	2 cut(s)	44, 779
HpyCH4V	TGCA	5 cut(s)	197, 619, 749, 761, 931
HpyF10VI	GCNNNNNNNGC	4 cut(s)	97, 131, 166, 633
HpyF3I	CTNAG	4 cut(s)	552, 677, 716, 939
HpySE526I	ACGT	2 cut(s)	44, 779
Hsp92I	GRCGYC	2 cut(s)	44, 55
Hsp92II	CATG	7 cut(s)	192, 254, 272, 321, 775, 814, 892
HspAI	GCGC	3 cut(s)	55, 172, 625
KasI	GGCGCC	1 cut(s)	54
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	2 cut(s)	220, 643
LmnI	GCTCC	2 cut(s)	105, 122
Lsp1109I	GCAGC	4 cut(s)	156, 178, 410, 915
LweI	GCATC	2 cut(s)	406, 915
MaeI	CTAG	2 cut(s)	525, 833
MaeII	ACGT	2 cut(s)	44, 779
MalI	GATC	2 cut(s)	222, 645
MboI	GATC	2 cut(s)	220, 643
MboII	GAAGA	6 cut(s)	218, 583, 614, 800, 923, 926
MhlI	GDGCHC	3 cut(s)	162, 204, 235
MluCI	AATT	5 cut(s)	285, 444, 584, 863, 894
Mly113I	GGCGCC	1 cut(s)	55
MlyI	GAGTC	2 cut(s)	585, 703
MseI	TTAA	2 cut(s)	284, 657
MspA1I	CMGCKG	1 cut(s)	169
MspI	CCGG	5 cut(s)	34, 52, 67, 120, 156
MspR9I	CCNGG	1 cut(s)	157
Mva1269I	GAATGC	1 cut(s)	534
MwoI	GCNNNNNNNGC	4 cut(s)	97, 131, 166, 633
NarI	GGCGCC	1 cut(s)	55
NciI	CCSGG	1 cut(s)	157
NdeII	GATC	2 cut(s)	220, 643
NlaIII	CATG	7 cut(s)	192, 254, 272, 321, 775, 814, 892
NlaIV	GGNNCC	2 cut(s)	56, 124
PagI	TCATGA	1 cut(s)	771
PceI	AGGCCT	1 cut(s)	134
PctI	GAATGC	1 cut(s)	534
PfeI	GAWTC	4 cut(s)	23, 365, 434, 884
PkrI	GCNGC	5 cut(s)	154, 168, 171, 425, 930
PleI	GAGTC	2 cut(s)	584, 702
PluTI	GGCGCC	1 cut(s)	58
PpsI	GAGTC	2 cut(s)	584, 702
PshBI	ATTAAT	1 cut(s)	284
Psp124BI	GAGCTC	2 cut(s)	204, 235
PspN4I	GGNNCC	2 cut(s)	56, 124
PstI	CTGCAG	2 cut(s)	763, 933
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SacI	GAGCTC	2 cut(s)	204, 235
SaqAI	TTAA	2 cut(s)	284, 657
SatI	GCNGC	5 cut(s)	153, 167, 170, 424, 929
Sau3AI	GATC	2 cut(s)	220, 643
SchI	GAGTC	2 cut(s)	585, 703
ScrFI	CCNGG	1 cut(s)	157
SduI	GDGCHC	3 cut(s)	162, 204, 235
SfaNI	GCATC	2 cut(s)	406, 915
SfcI	CTRYAG	2 cut(s)	759, 929
SfoI	GGCGCC	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	5 cut(s)	285, 444, 584, 863, 894
SseBI	AGGCCT	1 cut(s)	134
SsiI	CCGC	3 cut(s)	153, 556, 650
SspDI	GGCGCC	1 cut(s)	54
SspMI	CTAG	2 cut(s)	525, 833
SstI	GAGCTC	2 cut(s)	204, 235
StuI	AGGCCT	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	155
TaaI	ACNGT	2 cut(s)	17, 484
TaiI	ACGT	2 cut(s)	47, 782
TaqI	TCGA	3 cut(s)	229, 472, 538
TasI	AATT	5 cut(s)	285, 444, 584, 863, 894
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	4 cut(s)	23, 365, 434, 884
Tru1I	TTAA	2 cut(s)	284, 657
Tru9I	TTAA	2 cut(s)	284, 657
TscAI	CASTG	3 cut(s)	98, 267, 507
TseI	GCWGC	4 cut(s)	166, 169, 423, 928
TspGWI	ACGGA	2 cut(s)	63, 718
TspRI	CASTG	3 cut(s)	98, 267, 507
VspI	ATTAAT	1 cut(s)	284
XapI	RAATTY	1 cut(s)	444
XcmI	CCANNNNNNNNNTGG	2 cut(s)	90, 391
XspI	CTAG	2 cut(s)	525, 833
ZraI	GACGTC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.