Rmu_sc0010917.1_g000010

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010917.1
OG0006389
Physical Location & Seq
Forward (+)
55815 .. 56192
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010917.1_g000010.1.cds

Sequence Viewer

Length: 378 bp
atgaacccctcaaacggtgccgattctcgtcgccggaaaacgacgtcgtaccggcgccacactcaccggcctccttccagtccacttcagcactggaagatccacgacgacaaatccaccggagcctccaaggcctctgctcggaagctcgccgccgggctctggcagctgcgcttcagcgaagtttcatggggtgcagagctcaactctggcccgctgaatccttctgtacttcttcatgcatacgaagaagcccatagtataatttttctgtctatgttttccacaaaaaggacaacccattcgtccacaatggaagttgaaataagtcccgcacctgcaagtaatccaaaatcgaatatatataattcagaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.93

Weight (kDa)

9.99

Isoelectric Point (pI)

59.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 346
AatII GACGTC 1 cut(s) 47
Acc36I ACCTGC 1 cut(s) 346
AccB1I GGYRCC 2 cut(s) 17, 54
AciI CCGC 3 cut(s) 153, 215, 333
AclWI GGATC 1 cut(s) 94
AcuI CTGAAG 2 cut(s) 71, 160
AcyI GRCGYC 2 cut(s) 44, 55
AfaI GTAC 2 cut(s) 50, 231
AfiI CCNNNNNNNGG 4 cut(s) 14, 141, 162, 291
AgsI TTSAA 1 cut(s) 323
AluBI AGCT 3 cut(s) 148, 169, 202
AluI AGCT 3 cut(s) 148, 169, 202
Alw21I GWGCWC 1 cut(s) 204
AlwI GGATC 1 cut(s) 94
AoxI GGCC 3 cut(s) 68, 132, 211
ApeKI GCWGC 2 cut(s) 166, 169
ArsI GACNNNNNNTTYG 2 cut(s) 286, 318
AspLEI GCGC 2 cut(s) 57, 174
AspS9I GGNCC 1 cut(s) 212
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 56
BanI GGYRCC 2 cut(s) 17, 54
BanII GRGCYC 2 cut(s) 162, 204
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 2 cut(s) 156, 178
BcnI CCSGG 1 cut(s) 157
BfoI RGCGCY 1 cut(s) 58
BfuAI ACCTGC 1 cut(s) 346
BglI GCCNNNNNGGC 1 cut(s) 131
BisI GCNGC 3 cut(s) 153, 167, 170
BlsI GCNGC 3 cut(s) 154, 168, 171
Bme1390I CCNGG 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 212
BmiI GGNNCC 3 cut(s) 19, 56, 124
BmrFI CCNGG 1 cut(s) 157
BplI GAGNNNNNCTC 2 cut(s) 191, 223
BpuMI CCSGG 1 cut(s) 157
BsaHI GRCGYC 2 cut(s) 44, 55
BsaJI CCNNGG 1 cut(s) 129
BsaWI WCCGGW 1 cut(s) 119
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 141, 162, 291
Bse118I RCCGGY 2 cut(s) 51, 66
Bse1I ACTGG 2 cut(s) 78, 98
BseDI CCNNGG 1 cut(s) 129
BseLI CCNNNNNNNGG 4 cut(s) 14, 141, 162, 291
BseNI ACTGG 2 cut(s) 78, 98
BseXI GCAGC 2 cut(s) 156, 178
BsgI GTGCAG 1 cut(s) 216
BshFI GGCC 3 cut(s) 70, 134, 213
BshNI GGYRCC 2 cut(s) 17, 54
BsiHKAI GWGCWC 1 cut(s) 204
BsiSI CCGG 5 cut(s) 34, 52, 67, 120, 156
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 4 cut(s) 14, 141, 162, 291
BsmFI GGGAC 1 cut(s) 315
BsnI GGCC 3 cut(s) 70, 134, 213
Bsp1286I GDGCHC 2 cut(s) 162, 204
Bsp143I GATC 1 cut(s) 99
BspACI CCGC 3 cut(s) 153, 215, 333
BspANI GGCC 3 cut(s) 70, 134, 213
BspLI GGNNCC 3 cut(s) 19, 56, 124
BspMI ACCTGC 1 cut(s) 346
BspPI GGATC 1 cut(s) 94
BspT107I GGYRCC 2 cut(s) 17, 54
BsrFI RCCGGY 2 cut(s) 51, 66
BsrI ACTGG 2 cut(s) 78, 98
BssAI RCCGGY 2 cut(s) 51, 66
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 1 cut(s) 99
BssNI GRCGYC 2 cut(s) 44, 55
BssT1I CCWWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 17
BstACI GRCGYC 2 cut(s) 44, 55
BstC8I GCNNGC 2 cut(s) 150, 215
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 2 cut(s) 57, 174
BstKTI GATC 1 cut(s) 102
BstMBI GATC 1 cut(s) 99
BstMWI GCNNNNNNNGC 2 cut(s) 131, 166
BstSCI CCNGG 1 cut(s) 155
BstV1I GCAGC 2 cut(s) 156, 178
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BsuRI GGCC 3 cut(s) 70, 134, 213
BtsIMutI CAGTG 1 cut(s) 91
BveI ACCTGC 1 cut(s) 346
Cac8I GCNNGC 2 cut(s) 150, 215
CfoI GCGC 2 cut(s) 57, 174
Cfr10I RCCGGY 2 cut(s) 51, 66
Cfr13I GGNCC 1 cut(s) 212
Csp6I GTAC 2 cut(s) 49, 230
CviAII CATG 2 cut(s) 189, 239
CviJI RGCY 9 cut(s) 70, 125, 134, 148, 160, 169, 202, 213, 254
CviKI_1 RGCY 9 cut(s) 70, 125, 134, 148, 160, 169, 202, 213, 254
CviQI GTAC 2 cut(s) 49, 230
DinI GGCGCC 1 cut(s) 56
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
Ecl136II GAGCTC 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 129
Eco147I AGGCCT 1 cut(s) 134
Eco24I GRGCYC 2 cut(s) 162, 204
Eco53kI GAGCTC 1 cut(s) 202
Eco57I CTGAAG 2 cut(s) 71, 160
EcoICRI GAGCTC 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 129
EcoT22I ATGCAT 1 cut(s) 244
EcoT38I GRGCYC 2 cut(s) 162, 204
EgeI GGCGCC 1 cut(s) 56
EheI GGCGCC 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 2 cut(s) 192, 242
FaiI YATR 9 cut(s) 190, 240, 244, 258, 263, 278, 362, 364, 366
FaqI GGGAC 1 cut(s) 315
FatI CATG 2 cut(s) 188, 238
FauI CCCGC 2 cut(s) 222, 340
Fnu4HI GCNGC 3 cut(s) 153, 167, 170
FriOI GRGCYC 2 cut(s) 162, 204
Fsp4HI GCNGC 3 cut(s) 153, 167, 170
GlaI GCGC 2 cut(s) 56, 173
GluI GCNGC 3 cut(s) 153, 167, 170
HaeII RGCGCY 1 cut(s) 58
HaeIII GGCC 3 cut(s) 70, 134, 213
HapII CCGG 5 cut(s) 34, 52, 67, 120, 156
HhaI GCGC 2 cut(s) 57, 174
Hin1I GRCGYC 2 cut(s) 44, 55
Hin1II CATG 2 cut(s) 192, 242
Hin6I GCGC 2 cut(s) 55, 172
HinP1I GCGC 2 cut(s) 55, 172
HinfI GANTC 2 cut(s) 23, 220
HpaII CCGG 5 cut(s) 34, 52, 67, 120, 156
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 2 cut(s) 83, 309
Hpy188I TCNGA 2 cut(s) 144, 373
Hpy8I GTNNAC 2 cut(s) 83, 309
Hpy99I CGWCG 4 cut(s) 33, 46, 49, 110
HpyAV CCTTC 2 cut(s) 84, 234
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4IV ACGT 1 cut(s) 44
HpyCH4V TGCA 3 cut(s) 197, 242, 341
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 166
HpySE526I ACGT 1 cut(s) 44
Hsp92I GRCGYC 2 cut(s) 44, 55
Hsp92II CATG 2 cut(s) 192, 242
HspAI GCGC 2 cut(s) 55, 172
KasI GGCGCC 1 cut(s) 54
Kzo9I GATC 1 cut(s) 99
LmnI GCTCC 1 cut(s) 122
Lsp1109I GCAGC 2 cut(s) 156, 178
MaeII ACGT 1 cut(s) 44
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 3 cut(s) 109, 227, 260
MflI RGATCY 1 cut(s) 99
MhlI GDGCHC 2 cut(s) 162, 204
MluCI AATT 2 cut(s) 264, 367
Mly113I GGCGCC 1 cut(s) 55
MnlI CCTC 4 cut(s) 19, 81, 136, 145
Mph1103I ATGCAT 1 cut(s) 244
MspA1I CMGCKG 2 cut(s) 169, 217
MspI CCGG 5 cut(s) 34, 52, 67, 120, 156
MspR9I CCNGG 1 cut(s) 157
MwoI GCNNNNNNNGC 2 cut(s) 131, 166
NarI GGCGCC 1 cut(s) 55
NciI CCSGG 1 cut(s) 157
NdeII GATC 1 cut(s) 99
NlaIII CATG 2 cut(s) 192, 242
NlaIV GGNNCC 3 cut(s) 19, 56, 124
NsiI ATGCAT 1 cut(s) 244
PaqCI CACCTGC 1 cut(s) 346
PceI AGGCCT 1 cut(s) 134
PfeI GAWTC 2 cut(s) 23, 220
PkrI GCNGC 3 cut(s) 154, 168, 171
PluTI GGCGCC 1 cut(s) 58
Psp124BI GAGCTC 1 cut(s) 204
PspN4I GGNNCC 3 cut(s) 19, 56, 124
PspPI GGNCC 1 cut(s) 212
PsuI RGATCY 1 cut(s) 99
PvuII CAGCTG 1 cut(s) 169
RsaI GTAC 2 cut(s) 50, 231
RsaNI GTAC 2 cut(s) 49, 230
SacI GAGCTC 1 cut(s) 204
SatI GCNGC 3 cut(s) 153, 167, 170
Sau3AI GATC 1 cut(s) 99
Sau96I GGNCC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 157
SduI GDGCHC 2 cut(s) 162, 204
SetI ASST 5 cut(s) 47, 150, 171, 204, 340
SfoI GGCGCC 1 cut(s) 56
Sse9I AATT 2 cut(s) 264, 367
SseBI AGGCCT 1 cut(s) 134
SsiI CCGC 3 cut(s) 153, 215, 333
SspDI GGCGCC 1 cut(s) 54
SstI GAGCTC 1 cut(s) 204
StuI AGGCCT 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 155
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 17
TaiI ACGT 1 cut(s) 47
TaqI TCGA 1 cut(s) 356
TasI AATT 2 cut(s) 264, 367
TatI WGTACW 1 cut(s) 229
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 2 cut(s) 23, 220
TscAI CASTG 1 cut(s) 98
TseI GCWGC 2 cut(s) 166, 169
TspDTI ATGAA 3 cut(s) 17, 177, 227
TspRI CASTG 1 cut(s) 98
XcmI CCANNNNNNNNNTGG 1 cut(s) 90
ZraI GACGTC 1 cut(s) 45
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.