Rorug04G0402400

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006389
Physical Location & Seq
Forward (+)
56692479 .. 56694228
1750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0402400.1

Sequence Viewer

Length: 594 bp
ATGGCCTCCTCCTCCTCCACCTCAATTCTCTCACCCACCACCACCACCTCCACCTCCATAGTCCGCCACCACTCCTCCAAGCTCCCCTTCCCTTACTCCACCAAACCCATTTCCACTACTTTCTCTAACAACAGACCACTCACCAGACTCCACGTGTCCACCCCGACCAACAAGCCCGCCAACAACACCGCCAACAAGAAACCCACCTCGGAGACCGTCTTCTTCGACGGCGGGGCCCACTACGGCGACCTCGCGGCCAACCTCGTCCTGGGCTTCACTCTCCTCTGGCTGCCCCTAACGTTAGCCGCCGTGTTCCGGGCGTTTTTCCTGAGGTACAGGTTCACCAACCTGCGGGTGACGGTGATATCGGGACTGACGGGCCAGGACAGGAGTGACTTCTCGTACAAGGTCATCAAGGACGTTCAGGTGGTGCCACGTTTCATCGGCGAGTGGGGTGATATTATCATCACCCTCAGAGATGGCACCAAGGTCGATCTTAGGAGTGTGCCTAAGTTCAGAGAGATTGCCAAGTATTGCTTATCCATGGCTGATAAGCCTGCCGTGGTTAAGGAAACAGGAACCAAGGGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

21.76

Weight (kDa)

10.09

Isoelectric Point (pI)

32.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bPH_2 PF03703 109 - 179 4.7e-13 Bacterial PH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 357
AccB1I GGYRCC 2 cut(s) 430, 482
AccII CGCG 1 cut(s) 254
AciI CCGC 7 cut(s) 64, 177, 189, 231, 254, 306, 352
AclI AACGTT 1 cut(s) 299
AcoI YGGCCR 1 cut(s) 255
AcvI CACGTG 1 cut(s) 154
AfaI GTAC 2 cut(s) 335, 404
AfiI CCNNNNNNNGG 3 cut(s) 268, 315, 351
AflIII ACRYGT 1 cut(s) 153
AjnI CCWGG 2 cut(s) 267, 381
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
Alw26I GTCTC 1 cut(s) 206
AoxI GGCC 4 cut(s) 3, 234, 255, 379
ApaI GGGCCC 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 289
AspS9I GGNCC 3 cut(s) 234, 235, 379
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 7 cut(s) 24, 133, 334, 367, 373, 460, 467
AxyI CCTNAGG 1 cut(s) 329
BaeGI GKGCMC 1 cut(s) 238
BanI GGYRCC 2 cut(s) 430, 482
BanII GRGCYC 1 cut(s) 238
BbrPI CACGTG 1 cut(s) 154
BbsI GAAGAC 1 cut(s) 211
BbvI GCAGC 1 cut(s) 276
BccI CCATC 1 cut(s) 473
BceAI ACGGC 4 cut(s) 244, 259, 293, 545
BcgI CGANNNNNNTGC 2 cut(s) 472, 506
BciT130I CCWGG 2 cut(s) 269, 383
BcnI CCSGG 1 cut(s) 317
BcoDI GTCTC 1 cut(s) 206
BfuAI ACCTGC 1 cut(s) 357
BisI GCNGC 3 cut(s) 255, 290, 306
BlsI GCNGC 3 cut(s) 256, 291, 307
Bme1390I CCNGG 3 cut(s) 269, 317, 383
BmgT120I GGNCC 3 cut(s) 234, 235, 379
BmiI GGNNCC 5 cut(s) 235, 236, 432, 484, 580
BmrFI CCNGG 3 cut(s) 269, 317, 383
BpiI GAAGAC 1 cut(s) 211
BpuMI CCSGG 1 cut(s) 317
BsaAI YACGTR 1 cut(s) 154
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 6 cut(s) 207, 268, 486, 543, 561, 582
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 3 cut(s) 268, 315, 351
Bse21I CCTNAGG 1 cut(s) 329
BseBI CCWGG 2 cut(s) 269, 383
BseDI CCNNGG 6 cut(s) 207, 268, 486, 543, 561, 582
BseLI CCNNNNNNNGG 3 cut(s) 268, 315, 351
BseMII CTCAG 2 cut(s) 320, 487
BseRI GAGGAG 3 cut(s) 4, 64, 272
BseSI GKGCMC 1 cut(s) 238
BseXI GCAGC 1 cut(s) 276
Bsh1236I CGCG 1 cut(s) 254
BshFI GGCC 4 cut(s) 5, 236, 257, 381
BshNI GGYRCC 2 cut(s) 430, 482
BsiSI CCGG 1 cut(s) 316
BslFI GGGAC 1 cut(s) 384
BslI CCNNNNNNNGG 3 cut(s) 268, 315, 351
BsmAI GTCTC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 384
BsnI GGCC 4 cut(s) 5, 236, 257, 381
Bso31I GGTCTC 1 cut(s) 206
Bsp120I GGGCCC 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 238
Bsp143I GATC 1 cut(s) 493
Bsp19I CCATGG 1 cut(s) 543
BspACI CCGC 7 cut(s) 64, 177, 189, 231, 254, 306, 352
BspANI GGCC 4 cut(s) 5, 236, 257, 381
BspCNI CTCAG 2 cut(s) 321, 486
BspFNI CGCG 1 cut(s) 254
BspLI GGNNCC 5 cut(s) 235, 236, 432, 484, 580
BspMI ACCTGC 1 cut(s) 357
BspT107I GGYRCC 2 cut(s) 430, 482
BspTNI GGTCTC 1 cut(s) 206
BssECI CCNNGG 6 cut(s) 207, 268, 486, 543, 561, 582
BssMI GATC 1 cut(s) 493
BssT1I CCWWGG 3 cut(s) 486, 543, 582
Bst2UI CCWGG 2 cut(s) 269, 383
Bst4CI ACNGT 2 cut(s) 217, 361
BstBAI YACGTR 1 cut(s) 154
BstC8I GCNNGC 2 cut(s) 177, 558
BstDEI CTNAG 4 cut(s) 329, 473, 497, 510
BstDSI CCRYGG 2 cut(s) 543, 561
BstFNI CGCG 1 cut(s) 254
BstKTI GATC 1 cut(s) 496
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 1 cut(s) 493
BstNI CCWGG 2 cut(s) 269, 383
BstSCI CCNGG 3 cut(s) 267, 315, 381
BstSLI GKGCMC 1 cut(s) 238
BstUI CGCG 1 cut(s) 254
BstV1I GCAGC 1 cut(s) 276
BstV2I GAAGAC 1 cut(s) 211
Bsu36I CCTNAGG 1 cut(s) 329
BsuRI GGCC 4 cut(s) 5, 236, 257, 381
BtgI CCRYGG 2 cut(s) 543, 561
BveI ACCTGC 1 cut(s) 357
Cac8I GCNNGC 2 cut(s) 177, 558
Cfr13I GGNCC 3 cut(s) 234, 235, 379
Csp6I GTAC 2 cut(s) 334, 403
CviAII CATG 1 cut(s) 544
CviQI GTAC 2 cut(s) 334, 403
DdeI CTNAG 4 cut(s) 329, 473, 497, 510
DpnI GATC 1 cut(s) 495
DpnII GATC 1 cut(s) 493
EaeI YGGCCR 1 cut(s) 255
EciI GGCGGA 1 cut(s) 53
Eco130I CCWWGG 3 cut(s) 486, 543, 582
Eco24I GRGCYC 1 cut(s) 238
Eco31I GGTCTC 1 cut(s) 206
Eco32I GATATC 1 cut(s) 366
Eco72I CACGTG 1 cut(s) 154
Eco81I CCTNAGG 1 cut(s) 329
EcoO109I RGGNCCY 1 cut(s) 234
EcoRII CCWGG 2 cut(s) 267, 381
EcoRV GATATC 1 cut(s) 366
EcoT14I CCWWGG 3 cut(s) 486, 543, 582
EcoT38I GRGCYC 1 cut(s) 238
ErhI CCWWGG 3 cut(s) 486, 543, 582
FaeI CATG 1 cut(s) 547
FaiI YATR 2 cut(s) 59, 545
FalI AAGNNNNNCTT 4 cut(s) 71, 103, 521, 553
FaqI GGGAC 1 cut(s) 384
FatI CATG 1 cut(s) 543
FauI CCCGC 3 cut(s) 184, 224, 345
Fnu4HI GCNGC 3 cut(s) 255, 290, 306
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 3 cut(s) 255, 290, 306
GluI GCNGC 3 cut(s) 255, 290, 306
HaeIII GGCC 4 cut(s) 5, 236, 257, 381
HapII CCGG 1 cut(s) 316
Hin1II CATG 1 cut(s) 547
HinfI GANTC 1 cut(s) 147
HpaII CCGG 1 cut(s) 316
HphI GGTGA 7 cut(s) 24, 133, 334, 367, 373, 460, 467
Hpy166II GTNNAC 2 cut(s) 159, 342
Hpy188I TCNGA 3 cut(s) 211, 476, 518
Hpy188III TCNNGA 2 cut(s) 328, 369
Hpy8I GTNNAC 2 cut(s) 159, 342
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 2 cut(s) 217, 361
HpyCH4IV ACGT 4 cut(s) 153, 299, 420, 436
HpyF3I CTNAG 4 cut(s) 329, 473, 497, 510
HpySE526I ACGT 4 cut(s) 153, 299, 420, 436
Hsp92II CATG 1 cut(s) 547
Kzo9I GATC 1 cut(s) 493
LmnI GCTCC 1 cut(s) 87
Lsp1109I GCAGC 1 cut(s) 276
MaeII ACGT 4 cut(s) 153, 299, 420, 436
MaeIII GTNAC 2 cut(s) 355, 392
MalI GATC 1 cut(s) 495
MboI GATC 1 cut(s) 493
MboII GAAGA 2 cut(s) 211, 214
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 1 cut(s) 24
MlyI GAGTC 1 cut(s) 141
MseI TTAA 1 cut(s) 567
MspI CCGG 1 cut(s) 316
MspR9I CCNGG 3 cut(s) 269, 317, 383
MvaI CCWGG 2 cut(s) 269, 383
MvnI CGCG 1 cut(s) 254
NciI CCSGG 1 cut(s) 317
NcoI CCATGG 1 cut(s) 543
NdeII GATC 1 cut(s) 493
NlaIII CATG 1 cut(s) 547
NlaIV GGNNCC 5 cut(s) 235, 236, 432, 484, 580
NmuCI GTSAC 2 cut(s) 355, 392
PkrI GCNGC 3 cut(s) 256, 291, 307
PleI GAGTC 1 cut(s) 141
PmaCI CACGTG 1 cut(s) 154
PmlI CACGTG 1 cut(s) 154
PpsI GAGTC 1 cut(s) 141
Ppu21I YACGTR 1 cut(s) 154
Psp1406I AACGTT 1 cut(s) 299
Psp6I CCWGG 2 cut(s) 267, 381
PspCI CACGTG 1 cut(s) 154
PspGI CCWGG 2 cut(s) 267, 381
PspN4I GGNNCC 5 cut(s) 235, 236, 432, 484, 580
PspOMI GGGCCC 1 cut(s) 234
PspPI GGNCC 3 cut(s) 234, 235, 379
RsaI GTAC 2 cut(s) 335, 404
RsaNI GTAC 2 cut(s) 334, 403
SaqAI TTAA 1 cut(s) 567
SatI GCNGC 3 cut(s) 255, 290, 306
Sau3AI GATC 1 cut(s) 493
Sau96I GGNCC 3 cut(s) 234, 235, 379
SchI GAGTC 1 cut(s) 141
ScrFI CCNGG 3 cut(s) 269, 317, 383
SduI GDGCHC 1 cut(s) 238
Sse9I AATT 1 cut(s) 24
SsiI CCGC 7 cut(s) 64, 177, 189, 231, 254, 306, 352
StyD4I CCNGG 3 cut(s) 267, 315, 381
StyI CCWWGG 3 cut(s) 486, 543, 582
TaaI ACNGT 2 cut(s) 217, 361
TaiI ACGT 4 cut(s) 156, 302, 423, 439
TaqI TCGA 2 cut(s) 225, 492
TasI AATT 1 cut(s) 24
TauI GCSGC 2 cut(s) 257, 308
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TseFI GTSAC 2 cut(s) 355, 392
TseI GCWGC 1 cut(s) 289
Tsp45I GTSAC 2 cut(s) 355, 392
TspDTI ATGAA 1 cut(s) 430
XcmI CCANNNNNNNNNTGG 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.