Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006389

Physical Location & Seq

Genomic Coordinates Reverse (-)

2112195 .. 2113658

Gene Structure 1464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG029000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGAAAGATTGTCGAGTGAATACTGTGTCTATGGTTTCGGCAGTGAATGATGAACTAATGAAAGCTAGATTGAGCATTCGAGAGCTTGAAGCTAAGCAGAGGTCTTTCAGGAAGAGAGTCAAACACTTTTTGAGTAAGCTTGAAGAGGAAAGAGTATTGCAGAAGCGCAGAGAGTGCCAGAGAGATCGTGCGGTTATTAAGGAGTTGATGAAAGAACTAAGCAGGGAAAGGAGGAGTCGTCAATGGATGGAAAATCTTAGCACCAATCTGGTCAGTCGGTTAGCCAATGCAAAGTTGTCTGCAGACCAGTTCATGAAAACGTACAAGGAAGAGAAACAAAACAGAAGATTCATGGAACAAGTTTGTAGCGAACTAGCTGAACACCTTGGAGAGAACAAGGCTGAATTGAAGGCATTGAAAAGAGAATCCATGAAAATTATTGATGAATTGGAAGAAGAGAGAAAGATGTTGCAGATGACTGAGGCTTGGCGTGAAGAACGAGTGCAGATGAAGCTGATTGATGCAAAACTGGCTCTTGAAGATAAATATCATCAGGTGAACAAGCTGATAACAGATGTTGAAACTTTCTTAAGGTCAAGGTTCGCTACCCTGGATATGCCGGAATTAAGAAAGGCTGAGTTGATCCTACAGGAAGTTAAGTCATTGAATATTCAAGATATCGAGGAATTTACATATGTTGCTCTGAAATCAGATGATATATTCTCTACTTTTGAAGAGTTCCGACCATATGAAGGTAAAGGGAGAGAGATTAAACCTTGCATTTGTCACAGTGCTTCTAGCCATGATCCGAAATTCCATCCATCTAGTCCTGACAATAATCGGTTCAACAAAAACCCTTTGCCAAGTTACTCAAATTGTCTCAACGGTTATAGTAGTGGTGTGCAAGAAAGTGCTAGAGGTTGGGCAAACGGGAGTCATAGTGAGGATCAGGGTTCTTGTCATTCATCGGGAGGGCATAATTCCTCCATTATCAGGGTTAGCCAGTGCCGACATGTGTCTAGGAGCGGAAGTGCATGTAATGATAATGCAGGTCAATCCTCTCCAGATACTGAAATCATTGAAGTTTGCCCAGTATCGGAGCAGCAATCAGAGCAGAAGCTGTCTTCTATGTCCAAGCTTTGGAGATCATTCCCAACTAATGGTGAAGTTTTTAAGATAATTTTGGACGAAGACAAGAGCAGGCTTTCAAATGGGGTTACATCACGTTTGCAAAGAAATGATGCTGATAGTAGACTGACTGAACATGAGACCAGACACCGGGATTCAAATGAACATTTGTTCCCACTGGACATAGCGAATCCACACATCACTCGAGGGATGAAAGGACGCATCGAATGGCCCCGAGCTATCCAAAAGAATGGTTCAAATGCCAAGCTTTTGGAAGCAAAAATAGAAAGCCAGAGATCTCAACTACGCCATGTTTTTAAACAGAGCTTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

487

Amino Acids

56.46

Weight (kDa)

8.93

Isoelectric Point (pI)

63.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006389)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02210
malus_domestica	MD05G1345300.v1.1
prunus_persica	Prupe.4G021500_v2.0.a1
pyrus_communis	pycom05g31420
rosa_chinensis	RchiOBHm_Chr5g0003281
rosa_laevigata	RLG00000018061 RLG00000031103 RLG00000031104 RLG00000031121
rosa_multiflora	Rmu_co8274905.1_g000001 Rmu_sc0002494.1_g000002 Rmu_sc0002494.1_g000004 Rmu_sc0010917.1_g000009 Rmu_sc0010917.1_g000010
rosa_roxburghii	Rroxscaffold_1G00072680
rosa_rugosa	Rorug04G0401900 Rorug04G0402400
rosa_samantha	Rh5AG028400 Rh5AG028500 Rh5BG028600 Rh5CG030800 Rh5CG030900 Rh5DG027600 Rh5DG029000 Rh5DG029100
rosa_wichuraiana	Rw5G002650 Rw5G002700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1040
AccB7I	CCANNNNNTGG	2 cut(s)	1140, 1160
AccBSI	CCGCTC	1 cut(s)	1026
AccI	GTMKAC	1 cut(s)	1252
AciI	CCGC	2 cut(s)	191, 1026
AclWI	GGATC	3 cut(s)	637, 800, 954
AcsI	RAATTY	2 cut(s)	686, 812
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	6 cut(s)	752, 993, 1096, 1140, 1160, 1278
AflII	CTTAAG	1 cut(s)	589
AflIII	ACRYGT	1 cut(s)	1012
AjnI	CCWGG	1 cut(s)	609
AloI	GAACNNNNNNTCC	2 cut(s)	1284, 1316
Alw26I	GTCTC	2 cut(s)	884, 1262
AlwI	GGATC	3 cut(s)	637, 800, 954
AlwNI	CAGNNNCTG	2 cut(s)	1070, 1120
Ama87I	CYCGRG	2 cut(s)	1332, 1362
AoxI	GGCC	1 cut(s)	1358
ApeKI	GCWGC	1 cut(s)	1102
ApoI	RAATTY	2 cut(s)	686, 812
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	1359
AsuC2I	CCSGG	1 cut(s)	1280
AsuHPI	GGTGA	2 cut(s)	568, 1175
AvaI	CYCGRG	2 cut(s)	1332, 1362
BbsI	GAAGAC	2 cut(s)	1116, 1197
BbvI	GCAGC	1 cut(s)	1114
BccI	CCATC	3 cut(s)	241, 825, 829
BciT130I	CCWGG	1 cut(s)	611
BcnI	CCSGG	1 cut(s)	1280
BcoDI	GTCTC	2 cut(s)	884, 1262
BfaI	CTAG	6 cut(s)	66, 374, 798, 825, 915, 1020
BfmI	CTRYAG	2 cut(s)	300, 647
BfrI	CTTAAG	1 cut(s)	589
BfuAI	ACCTGC	1 cut(s)	1040
BglII	AGATCT	1 cut(s)	1424
BisI	GCNGC	1 cut(s)	1103
BlpI	GCTNAGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	1104
Bme1390I	CCNGG	2 cut(s)	611, 1280
BmeT110I	CYCGRG	2 cut(s)	1332, 1362
BmgT120I	GGNCC	1 cut(s)	1359
BmiI	GGNNCC	1 cut(s)	1361
BmrFI	CCNGG	2 cut(s)	611, 1280
BmrI	ACTGGG	1 cut(s)	1085
BmsI	GCATC	3 cut(s)	511, 1231, 1359
BmuI	ACTGGG	1 cut(s)	1085
BoxI	GACNNNNGTC	1 cut(s)	1015
BpiI	GAAGAC	2 cut(s)	1116, 1197
BpmI	CTGGAG	1 cut(s)	1047
Bpu1102I	GCTNAGC	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	1280
BsaBI	GATNNNNATC	1 cut(s)	546
BsaI	GGTCTC	1 cut(s)	1262
BsaJI	CCNNGG	2 cut(s)	385, 609
BsaXI	ACNNNNNCTCC	6 cut(s)	223, 253, 925, 955, 1015, 1045
Bsc4I	CCNNNNNNNGG	6 cut(s)	752, 993, 1096, 1140, 1160, 1278
Bse1I	ACTGG	5 cut(s)	307, 534, 1003, 1091, 1311
Bse8I	GATNNNNATC	1 cut(s)	546
BseBI	CCWGG	1 cut(s)	611
BseDI	CCNNGG	2 cut(s)	385, 609
BseGI	GGATG	3 cut(s)	252, 817, 1344
BseJI	GATNNNNATC	1 cut(s)	546
BseLI	CCNNNNNNNGG	6 cut(s)	752, 993, 1096, 1140, 1160, 1278
BseMII	CTCAG	2 cut(s)	471, 627
BseNI	ACTGG	5 cut(s)	307, 534, 1003, 1091, 1311
BseRI	GAGGAG	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	1114
BsgI	GTGCAG	1 cut(s)	524
BshFI	GGCC	1 cut(s)	1360
BsiHKCI	CYCGRG	2 cut(s)	1332, 1362
BsiSI	CCGG	2 cut(s)	620, 1279
BslI	CCNNNNNNNGG	6 cut(s)	752, 993, 1096, 1140, 1160, 1278
BsmAI	GTCTC	2 cut(s)	884, 1262
BsmI	GAATGC	1 cut(s)	75
BsnI	GGCC	1 cut(s)	1360
Bso31I	GGTCTC	1 cut(s)	1262
BsoBI	CYCGRG	2 cut(s)	1332, 1362
Bsp143I	GATC	6 cut(s)	184, 642, 805, 946, 1145, 1424
Bsp1720I	GCTNAGC	1 cut(s)	93
BspACI	CCGC	2 cut(s)	191, 1026
BspANI	GGCC	1 cut(s)	1360
BspCNI	CTCAG	2 cut(s)	472, 628
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	1 cut(s)	1361
BspMAI	CTGCAG	1 cut(s)	304
BspMI	ACCTGC	1 cut(s)	1040
BspPI	GGATC	3 cut(s)	637, 800, 954
BspTI	CTTAAG	1 cut(s)	589
BspTNI	GGTCTC	1 cut(s)	1262
BsrBI	CCGCTC	1 cut(s)	1026
BsrI	ACTGG	5 cut(s)	307, 534, 1003, 1091, 1311
BssECI	CCNNGG	2 cut(s)	385, 609
BssMI	GATC	6 cut(s)	184, 642, 805, 946, 1145, 1424
BssT1I	CCWWGG	1 cut(s)	385
Bst2UI	CCWGG	1 cut(s)	611
Bst4CI	ACNGT	3 cut(s)	25, 791, 887
Bst6I	CTCTTC	5 cut(s)	107, 138, 324, 450, 729
BstAFI	CTTAAG	1 cut(s)	589
BstAPI	GCANNNNNTGC	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	1202
BstDEI	CTNAG	5 cut(s)	93, 218, 257, 480, 636
BstF5I	GGATG	3 cut(s)	252, 817, 1344
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	6 cut(s)	187, 645, 808, 949, 1148, 1427
BstMAI	GTCTC	2 cut(s)	884, 1262
BstMBI	GATC	6 cut(s)	184, 642, 805, 946, 1145, 1424
BstMWI	GCNNNNNNNGC	4 cut(s)	174, 511, 530, 1111
BstNI	CCWGG	1 cut(s)	611
BstNSI	RCATGY	2 cut(s)	1016, 1038
BstPAI	GACNNNNGTC	1 cut(s)	1015
BstSCI	CCNGG	2 cut(s)	609, 1278
BstSFI	CTRYAG	2 cut(s)	300, 647
BstV1I	GCAGC	1 cut(s)	1114
BstV2I	GAAGAC	2 cut(s)	1116, 1197
BstX2I	RGATCY	1 cut(s)	1424
BstXI	CCANNNNNNTGG	2 cut(s)	1379, 1399
BstYI	RGATCY	1 cut(s)	1424
BsuRI	GGCC	1 cut(s)	1360
BtsCI	GGATG	3 cut(s)	252, 817, 1344
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	4 cut(s)	48, 796, 1010, 1304
BveI	ACCTGC	1 cut(s)	1040
Cac8I	GCNNGC	1 cut(s)	1202
CaiI	CAGNNNCTG	2 cut(s)	1070, 1120
CciI	TCATGA	1 cut(s)	312
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	1359
CseI	GACGC	1 cut(s)	1356
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	8 cut(s)	313, 352, 430, 803, 1013, 1035, 1265, 1439
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	5 cut(s)	93, 218, 257, 480, 636
DpnI	GATC	6 cut(s)	186, 644, 807, 948, 1147, 1426
DpnII	GATC	6 cut(s)	184, 642, 805, 946, 1145, 1424
DraI	TTTAAA	1 cut(s)	1447
Eam1104I	CTCTTC	5 cut(s)	107, 138, 324, 450, 729
EarI	CTCTTC	5 cut(s)	107, 138, 324, 450, 729
Eco130I	CCWWGG	1 cut(s)	385
Eco31I	GGTCTC	1 cut(s)	1262
Eco32I	GATATC	1 cut(s)	679
Eco88I	CYCGRG	2 cut(s)	1332, 1362
EcoRII	CCWGG	1 cut(s)	609
EcoRV	GATATC	1 cut(s)	679
EcoT14I	CCWWGG	1 cut(s)	385
ErhI	CCWWGG	1 cut(s)	385
FaeI	CATG	8 cut(s)	316, 355, 433, 806, 1016, 1038, 1268, 1442
FatI	CATG	8 cut(s)	312, 351, 429, 802, 1012, 1034, 1264, 1438
FauNDI	CATATG	2 cut(s)	694, 748
FblI	GTMKAC	1 cut(s)	1252
Fnu4HI	GCNGC	1 cut(s)	1103
FokI	GGATG	3 cut(s)	259, 804, 1351
Fsp4HI	GCNGC	1 cut(s)	1103
FspBI	CTAG	6 cut(s)	66, 374, 798, 825, 915, 1020
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	1 cut(s)	1103
GsuI	CTGGAG	1 cut(s)	1047
HaeIII	GGCC	1 cut(s)	1360
HapII	CCGG	2 cut(s)	620, 1279
HgaI	GACGC	1 cut(s)	1356
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	8 cut(s)	316, 355, 433, 806, 1016, 1038, 1268, 1442
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HindIII	AAGCTT	3 cut(s)	137, 1136, 1394
HinfI	GANTC	7 cut(s)	117, 235, 348, 425, 934, 1283, 1318
HpaII	CCGG	2 cut(s)	620, 1279
HphI	GGTGA	2 cut(s)	568, 1175
Hpy166II	GTNNAC	2 cut(s)	559, 1253
Hpy188I	TCNGA	6 cut(s)	705, 712, 743, 810, 1099, 1111
Hpy188III	TCNNGA	8 cut(s)	80, 109, 313, 536, 674, 830, 969, 1064
Hpy8I	GTNNAC	2 cut(s)	559, 1253
HpyAV	CCTTC	2 cut(s)	403, 746
HpyCH4III	ACNGT	3 cut(s)	25, 791, 887
HpyCH4IV	ACGT	2 cut(s)	320, 1225
HpyF10VI	GCNNNNNNNGC	4 cut(s)	174, 511, 530, 1111
HpyF3I	CTNAG	5 cut(s)	93, 218, 257, 480, 636
HpySE526I	ACGT	2 cut(s)	320, 1225
Hsp92II	CATG	8 cut(s)	316, 355, 433, 806, 1016, 1038, 1268, 1442
HspAI	GCGC	1 cut(s)	166
Kzo9I	GATC	6 cut(s)	184, 642, 805, 946, 1145, 1424
LmnI	GCTCC	2 cut(s)	1023, 1099
Lsp1109I	GCAGC	1 cut(s)	1114
LweI	GCATC	3 cut(s)	511, 1231, 1359
MaeI	CTAG	6 cut(s)	66, 374, 798, 825, 915, 1020
MaeII	ACGT	2 cut(s)	320, 1225
MaeIII	GTNAC	3 cut(s)	785, 866, 1216
MalI	GATC	6 cut(s)	186, 644, 807, 948, 1147, 1426
MbiI	CCGCTC	1 cut(s)	1026
MboI	GATC	6 cut(s)	184, 642, 805, 946, 1145, 1424
MflI	RGATCY	1 cut(s)	1424
MluCI	AATT	9 cut(s)	404, 435, 446, 623, 686, 812, 874, 979, 1179
MlyI	GAGTC	3 cut(s)	126, 244, 943
MmeI	TCCRAC	1 cut(s)	766
MseI	TTAA	7 cut(s)	198, 590, 626, 657, 771, 1173, 1446
MspCI	CTTAAG	1 cut(s)	589
MspI	CCGG	2 cut(s)	620, 1279
MspR9I	CCNGG	2 cut(s)	611, 1280
Mva1269I	GAATGC	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	611
MwoI	GCNNNNNNNGC	4 cut(s)	174, 511, 530, 1111
NciI	CCSGG	1 cut(s)	1280
NdeI	CATATG	2 cut(s)	694, 748
NdeII	GATC	6 cut(s)	184, 642, 805, 946, 1145, 1424
NlaIII	CATG	8 cut(s)	316, 355, 433, 806, 1016, 1038, 1268, 1442
NlaIV	GGNNCC	1 cut(s)	1361
NmuCI	GTSAC	1 cut(s)	785
NspI	RCATGY	2 cut(s)	1016, 1038
PaeR7I	CTCGAG	1 cut(s)	1332
PagI	TCATGA	1 cut(s)	312
PciI	ACATGT	1 cut(s)	1012
PctI	GAATGC	1 cut(s)	75
PfeI	GAWTC	4 cut(s)	348, 425, 1283, 1318
PflMI	CCANNNNNTGG	2 cut(s)	1140, 1160
PkrI	GCNGC	1 cut(s)	1104
PleI	GAGTC	3 cut(s)	125, 243, 942
PpsI	GAGTC	3 cut(s)	125, 243, 942
PscI	ACATGT	1 cut(s)	1012
PshAI	GACNNNNGTC	1 cut(s)	1015
Psp6I	CCWGG	1 cut(s)	609
PspGI	CCWGG	1 cut(s)	609
PspN4I	GGNNCC	1 cut(s)	1361
PspPI	GGNCC	1 cut(s)	1359
PspXI	VCTCGAGB	1 cut(s)	1332
PstI	CTGCAG	1 cut(s)	304
PstNI	CAGNNNCTG	2 cut(s)	1070, 1120
PsuI	RGATCY	1 cut(s)	1424
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SaqAI	TTAA	7 cut(s)	198, 590, 626, 657, 771, 1173, 1446
SatI	GCNGC	1 cut(s)	1103
Sau3AI	GATC	6 cut(s)	184, 642, 805, 946, 1145, 1424
Sau96I	GGNCC	1 cut(s)	1359
SchI	GAGTC	3 cut(s)	126, 244, 943
ScrFI	CCNGG	2 cut(s)	611, 1280
SfaNI	GCATC	3 cut(s)	511, 1231, 1359
SfcI	CTRYAG	2 cut(s)	300, 647
Sfr274I	CTCGAG	1 cut(s)	1332
SlaI	CTCGAG	1 cut(s)	1332
SmlI	CTYRAG	2 cut(s)	589, 1332
SmoI	CTYRAG	2 cut(s)	589, 1332
Sse9I	AATT	9 cut(s)	404, 435, 446, 623, 686, 812, 874, 979, 1179
SsiI	CCGC	2 cut(s)	191, 1026
SspI	AATATT	1 cut(s)	670
SspMI	CTAG	6 cut(s)	66, 374, 798, 825, 915, 1020
StyD4I	CCNGG	2 cut(s)	609, 1278
StyI	CCWWGG	1 cut(s)	385
TaaI	ACNGT	3 cut(s)	25, 791, 887
TaiI	ACGT	2 cut(s)	323, 1228
TaqI	TCGA	5 cut(s)	13, 79, 681, 1333, 1353
TasI	AATT	9 cut(s)	404, 435, 446, 623, 686, 812, 874, 979, 1179
TfiI	GAWTC	4 cut(s)	348, 425, 1283, 1318
Tru1I	TTAA	7 cut(s)	198, 590, 626, 657, 771, 1173, 1446
Tru9I	TTAA	7 cut(s)	198, 590, 626, 657, 771, 1173, 1446
TscAI	CASTG	4 cut(s)	48, 796, 1010, 1311
TseFI	GTSAC	1 cut(s)	785
TseI	GCWGC	1 cut(s)	1102
Tsp45I	GTSAC	1 cut(s)	785
TspRI	CASTG	4 cut(s)	48, 796, 1010, 1311
Van91I	CCANNNNNTGG	2 cut(s)	1140, 1160
Vha464I	CTTAAG	1 cut(s)	589
XapI	RAATTY	2 cut(s)	686, 812
XceI	RCATGY	2 cut(s)	1016, 1038
XhoI	CTCGAG	1 cut(s)	1332
XmiI	GTMKAC	1 cut(s)	1252
XspI	CTAG	6 cut(s)	66, 374, 798, 825, 915, 1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.