Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006389

Physical Location & Seq

Genomic Coordinates Reverse (-)

2113838 .. 2114343

Gene Structure 506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG029100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGAACCCCTCAAACGGTGCCGATTCTCGTCGCCGGAAAACGACGTCGTACCGGCGCCACACTCACCGACCTCCGTCCAGTCCACTTCAGCACTGGAAGCTCCACGACGACAAATCCACCGGAGCCTCCAAGGCCTCTGCTCGGAAGCTCGCCGCCGGGCTCTGGCAGCTGCGCTTCAGCGAAGTTTCATGGGGTACAGAGCTCAATTCTGGTTCTGATGATCATCTTCGAGCTCACCTTGAGGTTGTTACAAATAGCAAGAACATGGATGTTCAGTGGTTCATGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

96

Amino Acids

11.0

Weight (kDa)

10.34

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006389)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02210
malus_domestica	MD05G1345300.v1.1
prunus_persica	Prupe.4G021500_v2.0.a1
pyrus_communis	pycom05g31420
rosa_chinensis	RchiOBHm_Chr5g0003281
rosa_laevigata	RLG00000018061 RLG00000031103 RLG00000031104 RLG00000031121
rosa_multiflora	Rmu_co8274905.1_g000001 Rmu_sc0002494.1_g000002 Rmu_sc0002494.1_g000004 Rmu_sc0010917.1_g000009 Rmu_sc0010917.1_g000010
rosa_roxburghii	Rroxscaffold_1G00072680
rosa_rugosa	Rorug04G0401900 Rorug04G0402400
rosa_samantha	Rh5AG028400 Rh5AG028500 Rh5BG028600 Rh5CG030800 Rh5CG030900 Rh5DG027600 Rh5DG029000 Rh5DG029100
rosa_wichuraiana	Rw5G002650 Rw5G002700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	47
AccB1I	GGYRCC	2 cut(s)	17, 54
AciI	CCGC	1 cut(s)	153
AcuI	CTGAAG	2 cut(s)	71, 160
AcyI	GRCGYC	2 cut(s)	44, 55
AfaI	GTAC	2 cut(s)	50, 196
AfiI	CCNNNNNNNGG	3 cut(s)	14, 141, 162
AluBI	AGCT	5 cut(s)	100, 148, 169, 202, 233
AluI	AGCT	5 cut(s)	100, 148, 169, 202, 233
Alw21I	GWGCWC	2 cut(s)	204, 235
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	2 cut(s)	166, 169
AspLEI	GCGC	2 cut(s)	57, 174
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	2 cut(s)	56, 227
BanI	GGYRCC	2 cut(s)	17, 54
BanII	GRGCYC	3 cut(s)	162, 204, 235
Bbv12I	GWGCWC	2 cut(s)	204, 235
BbvI	GCAGC	2 cut(s)	156, 178
BclI	TGATCA	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	157
BfoI	RGCGCY	1 cut(s)	58
BglI	GCCNNNNNGGC	1 cut(s)	131
BisI	GCNGC	3 cut(s)	153, 167, 170
BlsI	GCNGC	3 cut(s)	154, 168, 171
Bme1390I	CCNGG	1 cut(s)	157
BmiI	GGNNCC	3 cut(s)	19, 56, 124
BmrFI	CCNGG	1 cut(s)	157
BoxI	GACNNNNGTC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	157
BsaBI	GATNNNNATC	1 cut(s)	222
BsaHI	GRCGYC	2 cut(s)	44, 55
BsaJI	CCNNGG	1 cut(s)	129
BsaWI	WCCGGW	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 141, 162
Bse118I	RCCGGY	1 cut(s)	51
Bse1I	ACTGG	2 cut(s)	78, 98
Bse8I	GATNNNNATC	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	274
BseJI	GATNNNNATC	1 cut(s)	222
BseLI	CCNNNNNNNGG	3 cut(s)	14, 141, 162
BseNI	ACTGG	2 cut(s)	78, 98
BseXI	GCAGC	2 cut(s)	156, 178
BshFI	GGCC	1 cut(s)	134
BshNI	GGYRCC	2 cut(s)	17, 54
BsiHKAI	GWGCWC	2 cut(s)	204, 235
BsiSI	CCGG	4 cut(s)	34, 52, 120, 156
BslI	CCNNNNNNNGG	3 cut(s)	14, 141, 162
BsnI	GGCC	1 cut(s)	134
Bsp1286I	GDGCHC	3 cut(s)	162, 204, 235
Bsp143I	GATC	1 cut(s)	220
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	1 cut(s)	134
BspLI	GGNNCC	3 cut(s)	19, 56, 124
BspT107I	GGYRCC	2 cut(s)	17, 54
BsrFI	RCCGGY	1 cut(s)	51
BsrI	ACTGG	2 cut(s)	78, 98
BssAI	RCCGGY	1 cut(s)	51
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	1 cut(s)	220
BssNI	GRCGYC	2 cut(s)	44, 55
BssT1I	CCWWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	17
BstACI	GRCGYC	2 cut(s)	44, 55
BstC8I	GCNNGC	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	274
BstH2I	RGCGCY	1 cut(s)	58
BstHHI	GCGC	2 cut(s)	57, 174
BstKTI	GATC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	3 cut(s)	97, 131, 166
BstPAI	GACNNNNGTC	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	155
BstV1I	GCAGC	2 cut(s)	156, 178
BsuRI	GGCC	1 cut(s)	134
BtsCI	GGATG	1 cut(s)	274
BtsIMutI	CAGTG	2 cut(s)	91, 281
Cac8I	GCNNGC	1 cut(s)	150
CfoI	GCGC	2 cut(s)	57, 174
Cfr10I	RCCGGY	1 cut(s)	51
Csp6I	GTAC	2 cut(s)	49, 195
CviAII	CATG	3 cut(s)	189, 265, 283
CviJI	RGCY	8 cut(s)	100, 125, 134, 148, 160, 169, 202, 233
CviKI_1	RGCY	8 cut(s)	100, 125, 134, 148, 160, 169, 202, 233
CviQI	GTAC	2 cut(s)	49, 195
DinI	GGCGCC	1 cut(s)	56
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
Ecl136II	GAGCTC	2 cut(s)	202, 233
Eco130I	CCWWGG	1 cut(s)	129
Eco147I	AGGCCT	1 cut(s)	134
Eco24I	GRGCYC	3 cut(s)	162, 204, 235
Eco53kI	GAGCTC	2 cut(s)	202, 233
Eco57I	CTGAAG	2 cut(s)	71, 160
EcoICRI	GAGCTC	2 cut(s)	202, 233
EcoT14I	CCWWGG	1 cut(s)	129
EcoT38I	GRGCYC	3 cut(s)	162, 204, 235
EgeI	GGCGCC	1 cut(s)	56
EheI	GGCGCC	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	3 cut(s)	192, 268, 286
FaiI	YATR	3 cut(s)	190, 266, 284
FatI	CATG	3 cut(s)	188, 264, 282
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	3 cut(s)	153, 167, 170
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	3 cut(s)	162, 204, 235
Fsp4HI	GCNGC	3 cut(s)	153, 167, 170
GlaI	GCGC	2 cut(s)	56, 173
GluI	GCNGC	3 cut(s)	153, 167, 170
HaeII	RGCGCY	1 cut(s)	58
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	4 cut(s)	34, 52, 120, 156
HhaI	GCGC	2 cut(s)	57, 174
Hin1I	GRCGYC	2 cut(s)	44, 55
Hin1II	CATG	3 cut(s)	192, 268, 286
Hin6I	GCGC	2 cut(s)	55, 172
HinP1I	GCGC	2 cut(s)	55, 172
HinfI	GANTC	1 cut(s)	23
HpaII	CCGG	4 cut(s)	34, 52, 120, 156
HphI	GGTGA	2 cut(s)	56, 227
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	2 cut(s)	144, 217
Hpy8I	GTNNAC	1 cut(s)	83
Hpy99I	CGWCG	4 cut(s)	33, 46, 49, 110
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	3 cut(s)	97, 131, 166
HpySE526I	ACGT	1 cut(s)	44
Hsp92I	GRCGYC	2 cut(s)	44, 55
Hsp92II	CATG	3 cut(s)	192, 268, 286
HspAI	GCGC	2 cut(s)	55, 172
KasI	GGCGCC	1 cut(s)	54
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	220
LmnI	GCTCC	2 cut(s)	105, 122
LpnPI	CCDG	8 cut(s)	47, 65, 79, 91, 133, 148, 169, 195
Lsp1109I	GCAGC	2 cut(s)	156, 178
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	1 cut(s)	218
MhlI	GDGCHC	3 cut(s)	162, 204, 235
MluCI	AATT	1 cut(s)	205
Mly113I	GGCGCC	1 cut(s)	55
MnlI	CCTC	5 cut(s)	19, 81, 136, 145, 235
MspA1I	CMGCKG	1 cut(s)	169
MspI	CCGG	4 cut(s)	34, 52, 120, 156
MspR9I	CCNGG	1 cut(s)	157
MwoI	GCNNNNNNNGC	3 cut(s)	97, 131, 166
NarI	GGCGCC	1 cut(s)	55
NciI	CCSGG	1 cut(s)	157
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	3 cut(s)	192, 268, 286
NlaIV	GGNNCC	3 cut(s)	19, 56, 124
PceI	AGGCCT	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	3 cut(s)	154, 168, 171
PluTI	GGCGCC	1 cut(s)	58
PshAI	GACNNNNGTC	1 cut(s)	73
Psp124BI	GAGCTC	2 cut(s)	204, 235
PspN4I	GGNNCC	3 cut(s)	19, 56, 124
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	2 cut(s)	50, 196
RsaNI	GTAC	2 cut(s)	49, 195
SacI	GAGCTC	2 cut(s)	204, 235
SatI	GCNGC	3 cut(s)	153, 167, 170
Sau3AI	GATC	1 cut(s)	220
ScrFI	CCNGG	1 cut(s)	157
SduI	GDGCHC	3 cut(s)	162, 204, 235
SetI	ASST	9 cut(s)	47, 73, 102, 150, 171, 204, 235, 240, 246
SfoI	GGCGCC	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	1 cut(s)	205
SseBI	AGGCCT	1 cut(s)	134
SsiI	CCGC	1 cut(s)	153
SspDI	GGCGCC	1 cut(s)	54
SstI	GAGCTC	2 cut(s)	204, 235
StuI	AGGCCT	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	155
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	17
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	1 cut(s)	229
TasI	AATT	1 cut(s)	205
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	23
TscAI	CASTG	2 cut(s)	98, 281
TseI	GCWGC	2 cut(s)	166, 169
TspDTI	ATGAA	3 cut(s)	17, 177, 271
TspGWI	ACGGA	1 cut(s)	63
TspRI	CASTG	2 cut(s)	98, 281
XcmI	CCANNNNNNNNNTGG	1 cut(s)	90
ZraI	GACGTC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.