Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006389

Physical Location & Seq

Genomic Coordinates Reverse (-)

2096118 .. 2096930

Gene Structure 813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031103

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGCCAGAGTTAAGAAAGGCTGAGTTGATCCTACAGGAAGTTAAGTCGTTGAATATTCAAGATATCGAGAAATTTACATATGTTGCTCTGAGATCAGATGATATATTCTCTACTTTTGAAGAGTTCCAACCATATGAAGGTAAAGGGAGAGAGATTAAACCTTGCATTTGTCACTGTGCTTCTAGCCATGATTTGAAATTCCATCCAGCGAGTCCTGACAATAATCAGTTCAACAAAAACCCTTTGCCAAGTTACTCGAATTGTCTCAACGGTTATAGTAGTGGTGTGCAAGAAAGTGCTAGAGGTTGGGCAAACAGGAGTCATAGTGAGGATCAGGGTTCTTGTCATTCATCGGGAGGGCATAATTCCTCCATTATCAGGGTTAGCCAGTGCCGACATGTGTCTAGGAGCGGAAGTGCATGTAATGATAATGCAGGTCAATCCTCTCCAGATACTGAAATCATTGAAGTTTGCCCAGTATCGGAGCAGCAATCAGAGCAGAAGCTGTCTTCTATGTCCAAGCTTTGGAGATCATGCCCAACTAATGGTGAAGTTTTTAAGATAATTTTGGACGAAGACAAGAGCAGGCTTTCAAATGGGGTTACATCATGTTTGCAAAGAAATGATGCTGATAGTAGACTGACTGAACATGAGACCAGACACCAGGATTCCAATGAACATTTGTTCCCACTGGACATAGCGAATCCACACATCACTCAAGGGATGAAAGGACGCATTGAATGGCCCCGACCTATCCAAAAGAATGGTTCAAATGCCAAGCTTTTGGAAGCAAAAATAGAAAGCCAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

271

Amino Acids

30.27

Weight (kDa)

6.13

Isoelectric Point (pI)

72.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006389)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02210
malus_domestica	MD05G1345300.v1.1
prunus_persica	Prupe.4G021500_v2.0.a1
pyrus_communis	pycom05g31420
rosa_chinensis	RchiOBHm_Chr5g0003281
rosa_laevigata	RLG00000018061 RLG00000031103 RLG00000031104 RLG00000031121
rosa_multiflora	Rmu_co8274905.1_g000001 Rmu_sc0002494.1_g000002 Rmu_sc0002494.1_g000004 Rmu_sc0010917.1_g000009 Rmu_sc0010917.1_g000010
rosa_roxburghii	Rroxscaffold_1G00072680
rosa_rugosa	Rorug04G0401900 Rorug04G0402400
rosa_samantha	Rh5AG028400 Rh5AG028500 Rh5BG028600 Rh5CG030800 Rh5CG030900 Rh5DG027600 Rh5DG029000 Rh5DG029100
rosa_wichuraiana	Rw5G002650 Rw5G002700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	425
AccB7I	CCANNNNNTGG	2 cut(s)	525, 545
AccBSI	CCGCTC	1 cut(s)	411
AccI	GTMKAC	1 cut(s)	637
AciI	CCGC	1 cut(s)	411
AclWI	GGATC	2 cut(s)	22, 339
AcsI	RAATTY	2 cut(s)	71, 197
AfiI	CCNNNNNNNGG	5 cut(s)	137, 378, 481, 525, 545
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	9 cut(s)	52, 59, 119, 196, 232, 467, 594, 740, 771
AjnI	CCWGG	1 cut(s)	663
AloI	GAACNNNNNNTCC	2 cut(s)	669, 701
AluBI	AGCT	3 cut(s)	505, 523, 781
AluI	AGCT	3 cut(s)	505, 523, 781
Alw26I	GTCTC	2 cut(s)	269, 647
AlwI	GGATC	2 cut(s)	22, 339
AlwNI	CAGNNNCTG	2 cut(s)	455, 505
AoxI	GGCC	1 cut(s)	743
ApeKI	GCWGC	1 cut(s)	487
ApoI	RAATTY	2 cut(s)	71, 197
AspS9I	GGNCC	1 cut(s)	744
AsuHPI	GGTGA	1 cut(s)	560
BbsI	GAAGAC	2 cut(s)	501, 582
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	1 cut(s)	210
BciT130I	CCWGG	1 cut(s)	665
BcoDI	GTCTC	2 cut(s)	269, 647
BfaI	CTAG	3 cut(s)	183, 300, 405
BfmI	CTRYAG	1 cut(s)	32
BfuAI	ACCTGC	1 cut(s)	425
BisI	GCNGC	1 cut(s)	488
BlsI	GCNGC	1 cut(s)	489
Bme1390I	CCNGG	1 cut(s)	665
BmgT120I	GGNCC	1 cut(s)	744
BmiI	GGNNCC	1 cut(s)	746
BmrFI	CCNGG	1 cut(s)	665
BmrI	ACTGGG	1 cut(s)	470
BmsI	GCATC	1 cut(s)	616
BmuI	ACTGGG	1 cut(s)	470
BoxI	GACNNNNGTC	1 cut(s)	400
BpiI	GAAGAC	2 cut(s)	501, 582
BpmI	CTGGAG	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	702
BsaI	GGTCTC	1 cut(s)	647
BsaXI	ACNNNNNCTCC	4 cut(s)	310, 340, 400, 430
Bsc4I	CCNNNNNNNGG	5 cut(s)	137, 378, 481, 525, 545
Bse1I	ACTGG	3 cut(s)	388, 476, 696
BseBI	CCWGG	1 cut(s)	665
BseGI	GGATG	2 cut(s)	202, 729
BseLI	CCNNNNNNNGG	5 cut(s)	137, 378, 481, 525, 545
BseMII	CTCAG	2 cut(s)	12, 80
BseNI	ACTGG	3 cut(s)	388, 476, 696
BseXI	GCAGC	1 cut(s)	499
BshFI	GGCC	1 cut(s)	745
BslI	CCNNNNNNNGG	5 cut(s)	137, 378, 481, 525, 545
BsmAI	GTCTC	2 cut(s)	269, 647
BsnI	GGCC	1 cut(s)	745
Bso31I	GGTCTC	1 cut(s)	647
Bsp143I	GATC	4 cut(s)	27, 92, 331, 530
BspACI	CCGC	1 cut(s)	411
BspANI	GGCC	1 cut(s)	745
BspCNI	CTCAG	2 cut(s)	13, 81
BspLI	GGNNCC	1 cut(s)	746
BspMI	ACCTGC	1 cut(s)	425
BspPI	GGATC	2 cut(s)	22, 339
BspTNI	GGTCTC	1 cut(s)	647
BsrBI	CCGCTC	1 cut(s)	411
BsrI	ACTGG	3 cut(s)	388, 476, 696
BssMI	GATC	4 cut(s)	27, 92, 331, 530
Bst2UI	CCWGG	1 cut(s)	665
Bst4CI	ACNGT	2 cut(s)	176, 272
Bst6I	CTCTTC	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	587
BstDEI	CTNAG	2 cut(s)	21, 89
BstF5I	GGATG	2 cut(s)	202, 729
BstKTI	GATC	4 cut(s)	30, 95, 334, 533
BstMAI	GTCTC	2 cut(s)	269, 647
BstMBI	GATC	4 cut(s)	27, 92, 331, 530
BstMWI	GCNNNNNNNGC	1 cut(s)	496
BstNI	CCWGG	1 cut(s)	665
BstNSI	RCATGY	2 cut(s)	401, 423
BstPAI	GACNNNNGTC	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	663
BstSFI	CTRYAG	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	499
BstV2I	GAAGAC	2 cut(s)	501, 582
BstXI	CCANNNNNNTGG	2 cut(s)	764, 784
BsuRI	GGCC	1 cut(s)	745
BtsCI	GGATG	2 cut(s)	202, 729
BtsIMutI	CAGTG	3 cut(s)	172, 395, 689
BveI	ACCTGC	1 cut(s)	425
Cac8I	GCNNGC	1 cut(s)	587
CaiI	CAGNNNCTG	2 cut(s)	455, 505
Cfr13I	GGNCC	1 cut(s)	744
CseI	GACGC	1 cut(s)	741
CviAII	CATG	6 cut(s)	188, 398, 420, 534, 609, 650
CviJI	RGCY	9 cut(s)	20, 186, 387, 505, 523, 589, 745, 781, 804
CviKI_1	RGCY	9 cut(s)	20, 186, 387, 505, 523, 589, 745, 781, 804
DdeI	CTNAG	2 cut(s)	21, 89
DpnI	GATC	4 cut(s)	29, 94, 333, 532
DpnII	GATC	4 cut(s)	27, 92, 331, 530
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	647
Eco32I	GATATC	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	663
EcoRV	GATATC	1 cut(s)	64
FaeI	CATG	6 cut(s)	191, 401, 423, 537, 612, 653
FatI	CATG	6 cut(s)	187, 397, 419, 533, 608, 649
FauNDI	CATATG	2 cut(s)	79, 133
FblI	GTMKAC	1 cut(s)	637
Fnu4HI	GCNGC	1 cut(s)	488
FokI	GGATG	2 cut(s)	189, 736
Fsp4HI	GCNGC	1 cut(s)	488
FspBI	CTAG	3 cut(s)	183, 300, 405
GluI	GCNGC	1 cut(s)	488
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	1 cut(s)	745
HgaI	GACGC	1 cut(s)	741
Hin1II	CATG	6 cut(s)	191, 401, 423, 537, 612, 653
HindIII	AAGCTT	2 cut(s)	521, 779
HinfI	GANTC	4 cut(s)	211, 319, 668, 703
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	1 cut(s)	638
Hpy188I	TCNGA	4 cut(s)	90, 97, 484, 496
Hpy188III	TCNNGA	5 cut(s)	59, 67, 215, 354, 449
Hpy8I	GTNNAC	1 cut(s)	638
HpyAV	CCTTC	1 cut(s)	131
HpyCH4III	ACNGT	2 cut(s)	176, 272
HpyCH4V	TGCA	5 cut(s)	165, 289, 419, 434, 616
HpyF10VI	GCNNNNNNNGC	1 cut(s)	496
HpyF3I	CTNAG	2 cut(s)	21, 89
Hsp92II	CATG	6 cut(s)	191, 401, 423, 537, 612, 653
Kzo9I	GATC	4 cut(s)	27, 92, 331, 530
LmnI	GCTCC	2 cut(s)	408, 484
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	1 cut(s)	616
MaeI	CTAG	3 cut(s)	183, 300, 405
MaeIII	GTNAC	3 cut(s)	170, 251, 601
MalI	GATC	4 cut(s)	29, 94, 333, 532
MbiI	CCGCTC	1 cut(s)	411
MboI	GATC	4 cut(s)	27, 92, 331, 530
MboII	GAAGA	3 cut(s)	131, 501, 587
MluCI	AATT	5 cut(s)	71, 197, 259, 364, 564
MlyI	GAGTC	2 cut(s)	220, 328
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	5 cut(s)	296, 322, 350, 379, 454
MseI	TTAA	4 cut(s)	11, 42, 156, 558
MspR9I	CCNGG	1 cut(s)	665
MvaI	CCWGG	1 cut(s)	665
MwoI	GCNNNNNNNGC	1 cut(s)	496
NdeI	CATATG	2 cut(s)	79, 133
NdeII	GATC	4 cut(s)	27, 92, 331, 530
NlaIII	CATG	6 cut(s)	191, 401, 423, 537, 612, 653
NlaIV	GGNNCC	1 cut(s)	746
NmuCI	GTSAC	1 cut(s)	170
NspI	RCATGY	2 cut(s)	401, 423
PciI	ACATGT	1 cut(s)	397
PfeI	GAWTC	2 cut(s)	668, 703
PflMI	CCANNNNNTGG	2 cut(s)	525, 545
PkrI	GCNGC	1 cut(s)	489
PleI	GAGTC	2 cut(s)	219, 327
PpsI	GAGTC	2 cut(s)	219, 327
PscI	ACATGT	1 cut(s)	397
PshAI	GACNNNNGTC	1 cut(s)	400
Psp6I	CCWGG	1 cut(s)	663
PspGI	CCWGG	1 cut(s)	663
PspN4I	GGNNCC	1 cut(s)	746
PspPI	GGNCC	1 cut(s)	744
PstNI	CAGNNNCTG	2 cut(s)	455, 505
SaqAI	TTAA	4 cut(s)	11, 42, 156, 558
SatI	GCNGC	1 cut(s)	488
Sau3AI	GATC	4 cut(s)	27, 92, 331, 530
Sau96I	GGNCC	1 cut(s)	744
SchI	GAGTC	2 cut(s)	220, 328
ScrFI	CCNGG	1 cut(s)	665
SetI	ASST	8 cut(s)	142, 163, 307, 439, 507, 525, 754, 783
SfaNI	GCATC	1 cut(s)	616
SfcI	CTRYAG	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	717
SmoI	CTYRAG	1 cut(s)	717
Sse9I	AATT	5 cut(s)	71, 197, 259, 364, 564
SsiI	CCGC	1 cut(s)	411
SspI	AATATT	1 cut(s)	55
SspMI	CTAG	3 cut(s)	183, 300, 405
StyD4I	CCNGG	1 cut(s)	663
TaaI	ACNGT	2 cut(s)	176, 272
TaqI	TCGA	2 cut(s)	66, 257
TasI	AATT	5 cut(s)	71, 197, 259, 364, 564
TfiI	GAWTC	2 cut(s)	668, 703
Tru1I	TTAA	4 cut(s)	11, 42, 156, 558
Tru9I	TTAA	4 cut(s)	11, 42, 156, 558
TscAI	CASTG	3 cut(s)	179, 395, 696
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	1 cut(s)	487
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	4 cut(s)	150, 339, 690, 740
TspRI	CASTG	3 cut(s)	179, 395, 696
Van91I	CCANNNNNTGG	2 cut(s)	525, 545
XapI	RAATTY	2 cut(s)	71, 197
XceI	RCATGY	2 cut(s)	401, 423
XmiI	GTMKAC	1 cut(s)	637
XspI	CTAG	3 cut(s)	183, 300, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.