Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006389

Physical Location & Seq

Genomic Coordinates Reverse (-)

1973139 .. 1981316

Gene Structure 8178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG027600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGAAAGATTGTCGAGTGAATACTGTGTCTATGGTTTCGGCAGTGAATGATGAACTAATGAAAGCTAGATTGAGCATTCGAGAGCTTGAAGCTAAGCGGAGGTCTTTCAGGAAGAGAGTCAAACACTTTTTGAGTAAGCTTGAAGAGGAAAGAGTATTGCAGAAGCGCAGAGAGTGCCAGAGAGATCGTGCGGTTATTAAGGAGTTGATGAAAGAACTAAGCAGGGAAAGGAGGAGTCGTCAACGGATGGAAAATCTTAGCACCAATCTGATCAGTCGGTTAGCCAATGCAAAGTTGTCTGCAGACAAGTTCATGAAAACTTATGAGGAAGAGAAACAAAACAGAAGATTCATGGAACAAGTTTGTAGCGAACTAGCTGAAAACATTGGAGAGAACAAGGCTGAATTGAACGCATTTAAAAGAGAATCCATGAAAATTATTGATGAATTGGAAGAAGAGAGAAAGATGTTGCAGATGACTGAGGCTTGGCGTGAAGAACGAGTGCAGATGAAGCTGATTGATGCTAAACTGGCTCTTGAAGATAAATATCTTCAGGTGAACAAGCTGATAACAGATGTTGAAACTTTCTTAAGGTCAAGGTTCGCTACCCTGGATATGCCGGAATTAAGAAAGGCTGAGTTGATCCTACAGGAAGTTAAGTCGTTGAATATTCAAGATATCGAGGAATTTACATATATTGCTCTGAAATCAGATGATATATTCTCTACTTTTGAAGAGTTCCGACCATATGAAGGTAAAGGGAGAGAGATTAAACCTTGCATTTGTCACAGTGCTTCTAGCCATGATTCGAAATTCCATCCGGTGAGTCCTGACAATAATCGGTTCAACAAAACCCCTTTGCCAAGTTACTCGAATTGTCTCAACGGTTATAGTAGTGGTGTGCAAGAAAGTGCTAGAGGTTGGGCAAATGGGAGTCATGGTGAGGATCAGGGTTCTTGTCATTCATTGGGAGGGCATAGTTCCTCCATTCTCAGGGTTGGCCGATGCCGACATGTGTCTAGGAGCAGAAGTGCATGTAATGATAATGCAGGTCAATCCTCTCCAGATACTGAAATCATTGAAGTTTGCCCAGTATTGGAGCAGCAATCAGAGCAGAAGCTGTCTTCCATGTCCAAGCTTTGGAGATCATGCCCAACTAATGGTGAAGTTTTTAAGATAATTTTGGATGAAGACAAGAGCAGGCTCTCAAATGGGGTTACATCATGTTTGCAAAAAAATGCTGATAGTAGACTGACTGAACAGGAGACCAGACACGGGGATTCAAATGAACATTTGTTCCCACCGGACATAGCGAATCCACACATCACTCGAGGGATGAAAGGACGCATTGAATGGCCCCGAGCCATCCAAAAGAATGGTTCAAATGTCAAGCTTTTGGAAGCAAAAATAGAAAGCCAGAGATCTCAACTGCGCCATGTTTTTAAACAGAGGTTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

486

Amino Acids

56.27

Weight (kDa)

9.0

Isoelectric Point (pI)

67.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006389)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02210
malus_domestica	MD05G1345300.v1.1
prunus_persica	Prupe.4G021500_v2.0.a1
pyrus_communis	pycom05g31420
rosa_chinensis	RchiOBHm_Chr5g0003281
rosa_laevigata	RLG00000018061 RLG00000031103 RLG00000031104 RLG00000031121
rosa_multiflora	Rmu_co8274905.1_g000001 Rmu_sc0002494.1_g000002 Rmu_sc0002494.1_g000004 Rmu_sc0010917.1_g000009 Rmu_sc0010917.1_g000010
rosa_roxburghii	Rroxscaffold_1G00072680
rosa_rugosa	Rorug04G0401900 Rorug04G0402400
rosa_samantha	Rh5AG028400 Rh5AG028500 Rh5BG028600 Rh5CG030800 Rh5CG030900 Rh5DG027600 Rh5DG029000 Rh5DG029100
rosa_wichuraiana	Rw5G002650 Rw5G002700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1040
AccB7I	CCANNNNNTGG	2 cut(s)	1140, 1160
AccI	GTMKAC	1 cut(s)	1249
AciI	CCGC	2 cut(s)	97, 191
AclWI	GGATC	2 cut(s)	637, 954
AcoI	YGGCCR	1 cut(s)	1000
AcsI	RAATTY	2 cut(s)	686, 812
AcuI	CTGAAG	1 cut(s)	536
AfiI	CCNNNNNNNGG	6 cut(s)	752, 993, 1096, 1140, 1160, 1275
AflII	CTTAAG	1 cut(s)	589
AflIII	ACRYGT	1 cut(s)	1012
AjnI	CCWGG	1 cut(s)	609
AloI	GAACNNNNNNTCC	2 cut(s)	1281, 1313
Alw26I	GTCTC	2 cut(s)	884, 1259
AlwI	GGATC	2 cut(s)	637, 954
AlwNI	CAGNNNCTG	2 cut(s)	1070, 1120
Ama87I	CYCGRG	2 cut(s)	1329, 1359
AoxI	GGCC	2 cut(s)	1000, 1355
ApeKI	GCWGC	1 cut(s)	1102
ApoI	RAATTY	2 cut(s)	686, 812
AspLEI	GCGC	2 cut(s)	168, 1434
AspS9I	GGNCC	1 cut(s)	1356
AsuHPI	GGTGA	4 cut(s)	568, 835, 953, 1175
AsuII	TTCGAA	1 cut(s)	809
AvaI	CYCGRG	2 cut(s)	1329, 1359
BbsI	GAAGAC	2 cut(s)	1116, 1197
BbvI	GCAGC	1 cut(s)	1114
BccI	CCATC	3 cut(s)	241, 825, 1373
BciT130I	CCWGG	1 cut(s)	611
BclI	TGATCA	1 cut(s)	270
BcoDI	GTCTC	2 cut(s)	884, 1259
BfaI	CTAG	5 cut(s)	66, 374, 798, 915, 1020
BfmI	CTRYAG	2 cut(s)	300, 647
BfrI	CTTAAG	1 cut(s)	589
BfuAI	ACCTGC	1 cut(s)	1040
BglII	AGATCT	1 cut(s)	1421
BisI	GCNGC	1 cut(s)	1103
BlpI	GCTNAGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	1104
Bme1390I	CCNGG	1 cut(s)	611
BmeT110I	CYCGRG	2 cut(s)	1329, 1359
BmgT120I	GGNCC	1 cut(s)	1356
BmiI	GGNNCC	1 cut(s)	1358
BmrFI	CCNGG	1 cut(s)	611
BmrI	ACTGGG	1 cut(s)	1085
BmsI	GCATC	2 cut(s)	511, 995
BmuI	ACTGGG	1 cut(s)	1085
BoxI	GACNNNNGTC	1 cut(s)	1015
BpiI	GAAGAC	2 cut(s)	1116, 1197
BpmI	CTGGAG	1 cut(s)	1047
Bpu1102I	GCTNAGC	1 cut(s)	93
Bpu14I	TTCGAA	1 cut(s)	809
BsaBI	GATNNNNATC	1 cut(s)	546
BsaI	GGTCTC	1 cut(s)	1259
BsaJI	CCNNGG	1 cut(s)	609
BsaWI	WCCGGW	2 cut(s)	820, 1303
BsaXI	ACNNNNNCTCC	6 cut(s)	223, 253, 925, 955, 1015, 1045
Bsc4I	CCNNNNNNNGG	6 cut(s)	752, 993, 1096, 1140, 1160, 1275
Bse1I	ACTGG	2 cut(s)	534, 1091
Bse8I	GATNNNNATC	1 cut(s)	546
BseBI	CCWGG	1 cut(s)	611
BseDI	CCNNGG	1 cut(s)	609
BseGI	GGATG	5 cut(s)	252, 817, 1192, 1341, 1365
BseJI	GATNNNNATC	1 cut(s)	546
BseLI	CCNNNNNNNGG	6 cut(s)	752, 993, 1096, 1140, 1160, 1275
BseMII	CTCAG	3 cut(s)	471, 627, 1006
BseNI	ACTGG	2 cut(s)	534, 1091
BseRI	GAGGAG	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	1114
BsgI	GTGCAG	1 cut(s)	524
BshFI	GGCC	2 cut(s)	1002, 1357
BsiHKCI	CYCGRG	2 cut(s)	1329, 1359
BsiSI	CCGG	3 cut(s)	620, 821, 1304
BslI	CCNNNNNNNGG	6 cut(s)	752, 993, 1096, 1140, 1160, 1275
BsmAI	GTCTC	2 cut(s)	884, 1259
BsmI	GAATGC	1 cut(s)	75
BsnI	GGCC	2 cut(s)	1002, 1357
Bso31I	GGTCTC	1 cut(s)	1259
BsoBI	CYCGRG	2 cut(s)	1329, 1359
Bsp119I	TTCGAA	1 cut(s)	809
Bsp143I	GATC	6 cut(s)	184, 270, 642, 946, 1145, 1421
Bsp1720I	GCTNAGC	1 cut(s)	93
BspACI	CCGC	2 cut(s)	97, 191
BspANI	GGCC	2 cut(s)	1002, 1357
BspCNI	CTCAG	3 cut(s)	472, 628, 1005
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	1 cut(s)	1358
BspMAI	CTGCAG	1 cut(s)	304
BspMI	ACCTGC	1 cut(s)	1040
BspPI	GGATC	2 cut(s)	637, 954
BspT104I	TTCGAA	1 cut(s)	809
BspTI	CTTAAG	1 cut(s)	589
BspTNI	GGTCTC	1 cut(s)	1259
BsrI	ACTGG	2 cut(s)	534, 1091
BssECI	CCNNGG	1 cut(s)	609
BssMI	GATC	6 cut(s)	184, 270, 642, 946, 1145, 1421
Bst2UI	CCWGG	1 cut(s)	611
Bst4CI	ACNGT	3 cut(s)	25, 791, 887
Bst6I	CTCTTC	5 cut(s)	107, 138, 324, 450, 729
BstAFI	CTTAAG	1 cut(s)	589
BstAPI	GCANNNNNTGC	1 cut(s)	174
BstBI	TTCGAA	1 cut(s)	809
BstC8I	GCNNGC	1 cut(s)	1202
BstDEI	CTNAG	6 cut(s)	93, 218, 257, 480, 636, 992
BstF5I	GGATG	5 cut(s)	252, 817, 1192, 1341, 1365
BstHHI	GCGC	2 cut(s)	168, 1434
BstKTI	GATC	6 cut(s)	187, 273, 645, 949, 1148, 1424
BstMAI	GTCTC	2 cut(s)	884, 1259
BstMBI	GATC	6 cut(s)	184, 270, 642, 946, 1145, 1421
BstMWI	GCNNNNNNNGC	4 cut(s)	174, 511, 530, 1111
BstNI	CCWGG	1 cut(s)	611
BstNSI	RCATGY	2 cut(s)	1016, 1038
BstPAI	GACNNNNGTC	1 cut(s)	1015
BstSCI	CCNGG	1 cut(s)	609
BstSFI	CTRYAG	2 cut(s)	300, 647
BstV1I	GCAGC	1 cut(s)	1114
BstV2I	GAAGAC	2 cut(s)	1116, 1197
BstX2I	RGATCY	1 cut(s)	1421
BstXI	CCANNNNNNTGG	1 cut(s)	1376
BstYI	RGATCY	1 cut(s)	1421
BsuRI	GGCC	2 cut(s)	1002, 1357
BtsCI	GGATG	5 cut(s)	252, 817, 1192, 1341, 1365
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	2 cut(s)	48, 796
BveI	ACCTGC	1 cut(s)	1040
Cac8I	GCNNGC	1 cut(s)	1202
CaiI	CAGNNNCTG	2 cut(s)	1070, 1120
CciI	TCATGA	1 cut(s)	312
CfoI	GCGC	2 cut(s)	168, 1434
Cfr13I	GGNCC	1 cut(s)	1356
CseI	GACGC	1 cut(s)	1353
DdeI	CTNAG	6 cut(s)	93, 218, 257, 480, 636, 992
DpnI	GATC	6 cut(s)	186, 272, 644, 948, 1147, 1423
DpnII	GATC	6 cut(s)	184, 270, 642, 946, 1145, 1421
DraI	TTTAAA	2 cut(s)	418, 1444
EaeI	YGGCCR	1 cut(s)	1000
Eam1104I	CTCTTC	5 cut(s)	107, 138, 324, 450, 729
EarI	CTCTTC	5 cut(s)	107, 138, 324, 450, 729
Eco31I	GGTCTC	1 cut(s)	1259
Eco32I	GATATC	1 cut(s)	679
Eco57I	CTGAAG	1 cut(s)	536
Eco88I	CYCGRG	2 cut(s)	1329, 1359
EcoRII	CCWGG	1 cut(s)	609
EcoRV	GATATC	1 cut(s)	679
FauNDI	CATATG	1 cut(s)	748
FbaI	TGATCA	1 cut(s)	270
FblI	GTMKAC	1 cut(s)	1249
Fnu4HI	GCNGC	1 cut(s)	1103
FokI	GGATG	5 cut(s)	259, 804, 1199, 1348, 1352
Fsp4HI	GCNGC	1 cut(s)	1103
FspBI	CTAG	5 cut(s)	66, 374, 798, 915, 1020
GlaI	GCGC	2 cut(s)	167, 1433
GluI	GCNGC	1 cut(s)	1103
GsuI	CTGGAG	1 cut(s)	1047
HaeIII	GGCC	2 cut(s)	1002, 1357
HapII	CCGG	3 cut(s)	620, 821, 1304
HgaI	GACGC	1 cut(s)	1353
HhaI	GCGC	2 cut(s)	168, 1434
Hin6I	GCGC	2 cut(s)	166, 1432
HinP1I	GCGC	2 cut(s)	166, 1432
HincII	GTYRAC	1 cut(s)	242
HindII	GTYRAC	1 cut(s)	242
HindIII	AAGCTT	3 cut(s)	137, 1136, 1391
HinfI	GANTC	9 cut(s)	117, 235, 348, 425, 806, 826, 934, 1280, 1315
HpaII	CCGG	3 cut(s)	620, 821, 1304
HphI	GGTGA	4 cut(s)	568, 835, 953, 1175
Hpy166II	GTNNAC	3 cut(s)	242, 559, 1250
Hpy188I	TCNGA	5 cut(s)	270, 705, 712, 743, 1111
Hpy188III	TCNNGA	7 cut(s)	80, 109, 313, 536, 674, 830, 1064
Hpy8I	GTNNAC	3 cut(s)	242, 559, 1250
HpyAV	CCTTC	1 cut(s)	746
HpyCH4III	ACNGT	3 cut(s)	25, 791, 887
HpyF10VI	GCNNNNNNNGC	4 cut(s)	174, 511, 530, 1111
HpyF3I	CTNAG	6 cut(s)	93, 218, 257, 480, 636, 992
HspAI	GCGC	2 cut(s)	166, 1432
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	6 cut(s)	184, 270, 642, 946, 1145, 1421
LmnI	GCTCC	2 cut(s)	1023, 1099
Lsp1109I	GCAGC	1 cut(s)	1114
LweI	GCATC	2 cut(s)	511, 995
MaeI	CTAG	5 cut(s)	66, 374, 798, 915, 1020
MaeIII	GTNAC	3 cut(s)	785, 866, 1216
MalI	GATC	6 cut(s)	186, 272, 644, 948, 1147, 1423
MboI	GATC	6 cut(s)	184, 270, 642, 946, 1145, 1421
MflI	RGATCY	1 cut(s)	1421
MluCI	AATT	8 cut(s)	404, 435, 446, 623, 686, 812, 874, 1179
MlyI	GAGTC	4 cut(s)	126, 244, 835, 943
MmeI	TCCRAC	1 cut(s)	766
MseI	TTAA	8 cut(s)	198, 417, 590, 626, 657, 771, 1173, 1443
MspCI	CTTAAG	1 cut(s)	589
MspI	CCGG	3 cut(s)	620, 821, 1304
MspR9I	CCNGG	1 cut(s)	611
Mva1269I	GAATGC	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	611
MwoI	GCNNNNNNNGC	4 cut(s)	174, 511, 530, 1111
NdeI	CATATG	1 cut(s)	748
NdeII	GATC	6 cut(s)	184, 270, 642, 946, 1145, 1421
NlaIV	GGNNCC	1 cut(s)	1358
NmuCI	GTSAC	1 cut(s)	785
NspI	RCATGY	2 cut(s)	1016, 1038
NspV	TTCGAA	1 cut(s)	809
PaeR7I	CTCGAG	1 cut(s)	1329
PagI	TCATGA	1 cut(s)	312
PciI	ACATGT	1 cut(s)	1012
PctI	GAATGC	1 cut(s)	75
PfeI	GAWTC	5 cut(s)	348, 425, 806, 1280, 1315
PflMI	CCANNNNNTGG	2 cut(s)	1140, 1160
PkrI	GCNGC	1 cut(s)	1104
PleI	GAGTC	4 cut(s)	125, 243, 834, 942
PpsI	GAGTC	4 cut(s)	125, 243, 834, 942
PscI	ACATGT	1 cut(s)	1012
PshAI	GACNNNNGTC	1 cut(s)	1015
Psp6I	CCWGG	1 cut(s)	609
PspGI	CCWGG	1 cut(s)	609
PspN4I	GGNNCC	1 cut(s)	1358
PspPI	GGNCC	1 cut(s)	1356
PspXI	VCTCGAGB	1 cut(s)	1329
PstI	CTGCAG	1 cut(s)	304
PstNI	CAGNNNCTG	2 cut(s)	1070, 1120
PsuI	RGATCY	1 cut(s)	1421
SaqAI	TTAA	8 cut(s)	198, 417, 590, 626, 657, 771, 1173, 1443
SatI	GCNGC	1 cut(s)	1103
Sau3AI	GATC	6 cut(s)	184, 270, 642, 946, 1145, 1421
Sau96I	GGNCC	1 cut(s)	1356
SchI	GAGTC	4 cut(s)	126, 244, 835, 943
ScrFI	CCNGG	1 cut(s)	611
SfaNI	GCATC	2 cut(s)	511, 995
SfcI	CTRYAG	2 cut(s)	300, 647
Sfr274I	CTCGAG	1 cut(s)	1329
SfuI	TTCGAA	1 cut(s)	809
SlaI	CTCGAG	1 cut(s)	1329
SmlI	CTYRAG	2 cut(s)	589, 1329
SmoI	CTYRAG	2 cut(s)	589, 1329
Sse9I	AATT	8 cut(s)	404, 435, 446, 623, 686, 812, 874, 1179
SsiI	CCGC	2 cut(s)	97, 191
SspI	AATATT	1 cut(s)	670
SspMI	CTAG	5 cut(s)	66, 374, 798, 915, 1020
StyD4I	CCNGG	1 cut(s)	609
TaaI	ACNGT	3 cut(s)	25, 791, 887
TaqI	TCGA	6 cut(s)	13, 79, 681, 809, 872, 1330
TasI	AATT	8 cut(s)	404, 435, 446, 623, 686, 812, 874, 1179
TfiI	GAWTC	5 cut(s)	348, 425, 806, 1280, 1315
Tru1I	TTAA	8 cut(s)	198, 417, 590, 626, 657, 771, 1173, 1443
Tru9I	TTAA	8 cut(s)	198, 417, 590, 626, 657, 771, 1173, 1443
TscAI	CASTG	2 cut(s)	48, 796
TseFI	GTSAC	1 cut(s)	785
TseI	GCWGC	1 cut(s)	1102
Tsp45I	GTSAC	1 cut(s)	785
TspGWI	ACGGA	1 cut(s)	259
TspRI	CASTG	2 cut(s)	48, 796
Van91I	CCANNNNNTGG	2 cut(s)	1140, 1160
Vha464I	CTTAAG	1 cut(s)	589
XapI	RAATTY	2 cut(s)	686, 812
XceI	RCATGY	2 cut(s)	1016, 1038
XhoI	CTCGAG	1 cut(s)	1329
XmiI	GTMKAC	1 cut(s)	1249
XspI	CTAG	5 cut(s)	66, 374, 798, 915, 1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.