Rmu_sc0002494.1_g000004

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002494.1
OG0006389
Physical Location & Seq
Forward (+)
23629 .. 25029
1401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002494.1_g000004.1.cds

Sequence Viewer

Length: 1053 bp
atgaacccctcaaacggtgcggattctcgtcgccggaaaacgacgtcgtaccggcgccacactcaccggcctccgtccagtccacttcagcactggaaactccacgacgacaaatccacgggagcctccgaggcctctgctcggaagctcgccgccgggctctggcagctgcgcttcagcgaagtttcatggggtgcagagctcaactctggttctgatgatcatcttcgagctcaccttgagcttgaatcgtcgttgaatattcaagatatcaaggaatttacatatattgctctgaaatcagatgatatattctttacttttgaagagttccgaccatatgaaggtaaagggagagagattaaaccttgcatttgtcacagtgcttctagccatgattcgaaattccatccggtgagtcctgacaataatcggttcaacaaaacccctttgccaagttactcaaattgtctcaacggttatagtagttgtgtgcaagaaagtgctacaggttgggcaaatgggagtcatggtgaggatcagggttcttgtcattcattgggagggcatagttcctccattctcagggttggccgatgccaacatgtgtctaggagcggaagtgcatgtaatgataatgcaggtcaatcctctccagatactgaaatcattgaagtttgcccagtatcggagcagcaatcagagcagaagctgtcttctatgtccaagctttggagatcatgcccaactaatggtgaagtttttaagataattttggatgaagacaagagcaggctctcaaatggggttacatcatgtttgcaaagaaatgctgatagtagactgactgaacatgagaccggacactgggattcaaatgaacatttgttcccaccggacatagcgaatccacacatcactcgagggatgaaaggacgcattgaatggccccgagccatccaaaagaaaggttcaaatgccaagcttttggaagcaaaaatagaaagccagagatctcaactgcgccatgtttttaaacagaggtttaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

350

Amino Acids

39.28

Weight (kDa)

8.49

Isoelectric Point (pI)

62.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 47
Acc36I ACCTGC 1 cut(s) 632
AccB1I GGYRCC 1 cut(s) 54
AccB7I CCANNNNNTGG 2 cut(s) 732, 752
AccBSI CCGCTC 1 cut(s) 618
AccI GTMKAC 1 cut(s) 841
AciI CCGC 3 cut(s) 20, 153, 618
AclWI GGATC 1 cut(s) 546
AcoI YGGCCR 1 cut(s) 592
AcsI RAATTY 2 cut(s) 278, 404
AcuI CTGAAG 2 cut(s) 71, 160
AcyI GRCGYC 2 cut(s) 44, 55
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 9 cut(s) 14, 141, 162, 344, 585, 688, 732, 752, 867
AflIII ACRYGT 1 cut(s) 604
AgsI TTSAA 9 cut(s) 248, 259, 266, 326, 439, 674, 876, 944, 975
AloI GAACNNNNNNTCC 2 cut(s) 873, 905
AluBI AGCT 8 cut(s) 148, 169, 202, 233, 244, 712, 730, 985
AluI AGCT 8 cut(s) 148, 169, 202, 233, 244, 712, 730, 985
Alw21I GWGCWC 2 cut(s) 204, 235
Alw26I GTCTC 2 cut(s) 476, 851
AlwI GGATC 1 cut(s) 546
AlwNI CAGNNNCTG 2 cut(s) 662, 712
Ama87I CYCGRG 2 cut(s) 921, 951
AoxI GGCC 4 cut(s) 68, 132, 592, 947
ApeKI GCWGC 3 cut(s) 166, 169, 694
ApoI RAATTY 2 cut(s) 278, 404
AspLEI GCGC 3 cut(s) 57, 174, 1026
AspS9I GGNCC 1 cut(s) 948
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 5 cut(s) 56, 227, 427, 545, 767
AsuII TTCGAA 1 cut(s) 401
AvaI CYCGRG 2 cut(s) 921, 951
BanI GGYRCC 1 cut(s) 54
BanII GRGCYC 3 cut(s) 162, 204, 235
BbsI GAAGAC 2 cut(s) 708, 789
Bbv12I GWGCWC 2 cut(s) 204, 235
BbvI GCAGC 3 cut(s) 156, 178, 706
BccI CCATC 2 cut(s) 417, 965
BcgI CGANNNNNNTGC 2 cut(s) 119, 153
BclI TGATCA 1 cut(s) 220
BcnI CCSGG 1 cut(s) 157
BcoDI GTCTC 2 cut(s) 476, 851
BfaI CTAG 2 cut(s) 390, 612
BfmI CTRYAG 1 cut(s) 507
BfoI RGCGCY 1 cut(s) 58
BfuAI ACCTGC 1 cut(s) 632
BglI GCCNNNNNGGC 1 cut(s) 131
BglII AGATCT 1 cut(s) 1013
BisI GCNGC 4 cut(s) 153, 167, 170, 695
BlsI GCNGC 4 cut(s) 154, 168, 171, 696
Bme1390I CCNGG 1 cut(s) 157
BmeT110I CYCGRG 2 cut(s) 921, 951
BmgT120I GGNCC 1 cut(s) 948
BmiI GGNNCC 3 cut(s) 56, 124, 950
BmrFI CCNGG 1 cut(s) 157
BmrI ACTGGG 2 cut(s) 677, 877
BmsI GCATC 1 cut(s) 587
BmuI ACTGGG 2 cut(s) 677, 877
BpiI GAAGAC 2 cut(s) 708, 789
BplI GAGNNNNNCTC 2 cut(s) 191, 223
BpmI CTGGAG 1 cut(s) 639
Bpu14I TTCGAA 1 cut(s) 401
BpuEI CTTGAG 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 157
BsaBI GATNNNNATC 1 cut(s) 222
BsaHI GRCGYC 2 cut(s) 44, 55
BsaI GGTCTC 1 cut(s) 851
BsaJI CCNNGG 2 cut(s) 117, 129
BsaWI WCCGGW 3 cut(s) 412, 860, 895
BsaXI ACNNNNNCTCC 4 cut(s) 517, 547, 607, 637
Bsc4I CCNNNNNNNGG 9 cut(s) 14, 141, 162, 344, 585, 688, 732, 752, 867
Bse118I RCCGGY 2 cut(s) 51, 66
Bse1I ACTGG 4 cut(s) 78, 98, 683, 872
Bse8I GATNNNNATC 1 cut(s) 222
BseDI CCNNGG 2 cut(s) 117, 129
BseGI GGATG 4 cut(s) 409, 784, 933, 957
BseJI GATNNNNATC 1 cut(s) 222
BseLI CCNNNNNNNGG 9 cut(s) 14, 141, 162, 344, 585, 688, 732, 752, 867
BseMII CTCAG 1 cut(s) 598
BseNI ACTGG 4 cut(s) 78, 98, 683, 872
BseXI GCAGC 3 cut(s) 156, 178, 706
BsgI GTGCAG 1 cut(s) 216
BshFI GGCC 4 cut(s) 70, 134, 594, 949
BshNI GGYRCC 1 cut(s) 54
BsiHKAI GWGCWC 2 cut(s) 204, 235
BsiHKCI CYCGRG 2 cut(s) 921, 951
BsiSI CCGG 7 cut(s) 34, 52, 67, 156, 413, 861, 896
BslI CCNNNNNNNGG 9 cut(s) 14, 141, 162, 344, 585, 688, 732, 752, 867
BsmAI GTCTC 2 cut(s) 476, 851
BsnI GGCC 4 cut(s) 70, 134, 594, 949
Bso31I GGTCTC 1 cut(s) 851
BsoBI CYCGRG 2 cut(s) 921, 951
Bsp119I TTCGAA 1 cut(s) 401
Bsp1286I GDGCHC 3 cut(s) 162, 204, 235
Bsp143I GATC 4 cut(s) 220, 538, 737, 1013
BspACI CCGC 3 cut(s) 20, 153, 618
BspANI GGCC 4 cut(s) 70, 134, 594, 949
BspCNI CTCAG 1 cut(s) 597
BspLI GGNNCC 3 cut(s) 56, 124, 950
BspMI ACCTGC 1 cut(s) 632
BspPI GGATC 1 cut(s) 546
BspT104I TTCGAA 1 cut(s) 401
BspT107I GGYRCC 1 cut(s) 54
BspTNI GGTCTC 1 cut(s) 851
BsrBI CCGCTC 1 cut(s) 618
BsrFI RCCGGY 2 cut(s) 51, 66
BsrI ACTGG 4 cut(s) 78, 98, 683, 872
BssAI RCCGGY 2 cut(s) 51, 66
BssECI CCNNGG 2 cut(s) 117, 129
BssMI GATC 4 cut(s) 220, 538, 737, 1013
BssNI GRCGYC 2 cut(s) 44, 55
Bst4CI ACNGT 3 cut(s) 17, 383, 479
Bst6I CTCTTC 1 cut(s) 321
BstACI GRCGYC 2 cut(s) 44, 55
BstBI TTCGAA 1 cut(s) 401
BstC8I GCNNGC 2 cut(s) 150, 794
BstDEI CTNAG 1 cut(s) 584
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 4 cut(s) 409, 784, 933, 957
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 3 cut(s) 57, 174, 1026
BstKTI GATC 4 cut(s) 223, 541, 740, 1016
BstMAI GTCTC 2 cut(s) 476, 851
BstMBI GATC 4 cut(s) 220, 538, 737, 1013
BstMWI GCNNNNNNNGC 3 cut(s) 131, 166, 703
BstNSI RCATGY 2 cut(s) 608, 630
BstSCI CCNGG 1 cut(s) 155
BstSFI CTRYAG 1 cut(s) 507
BstV1I GCAGC 3 cut(s) 156, 178, 706
BstV2I GAAGAC 2 cut(s) 708, 789
BstX2I RGATCY 1 cut(s) 1013
BstXI CCANNNNNNTGG 1 cut(s) 988
BstYI RGATCY 1 cut(s) 1013
BsuRI GGCC 4 cut(s) 70, 134, 594, 949
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 4 cut(s) 409, 784, 933, 957
BtsIMutI CAGTG 3 cut(s) 91, 388, 865
BveI ACCTGC 1 cut(s) 632
Cac8I GCNNGC 2 cut(s) 150, 794
CaiI CAGNNNCTG 2 cut(s) 662, 712
CfoI GCGC 3 cut(s) 57, 174, 1026
Cfr10I RCCGGY 2 cut(s) 51, 66
Cfr13I GGNCC 1 cut(s) 948
CseI GACGC 1 cut(s) 945
Csp6I GTAC 1 cut(s) 49
CviAII CATG 9 cut(s) 189, 395, 530, 605, 627, 741, 816, 854, 1028
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 1 cut(s) 584
DinI GGCGCC 1 cut(s) 56
DpnI GATC 4 cut(s) 222, 540, 739, 1015
DpnII GATC 4 cut(s) 220, 538, 737, 1013
DraI TTTAAA 1 cut(s) 1036
EaeI YGGCCR 1 cut(s) 592
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Ecl136II GAGCTC 2 cut(s) 202, 233
Eco147I AGGCCT 1 cut(s) 134
Eco24I GRGCYC 3 cut(s) 162, 204, 235
Eco31I GGTCTC 1 cut(s) 851
Eco32I GATATC 1 cut(s) 271
Eco53kI GAGCTC 2 cut(s) 202, 233
Eco57I CTGAAG 2 cut(s) 71, 160
Eco88I CYCGRG 2 cut(s) 921, 951
EcoICRI GAGCTC 2 cut(s) 202, 233
EcoRV GATATC 1 cut(s) 271
EcoT38I GRGCYC 3 cut(s) 162, 204, 235
EgeI GGCGCC 1 cut(s) 56
EheI GGCGCC 1 cut(s) 56
FaeI CATG 9 cut(s) 192, 398, 533, 608, 630, 744, 819, 857, 1031
FatI CATG 9 cut(s) 188, 394, 529, 604, 626, 740, 815, 853, 1027
FauNDI CATATG 1 cut(s) 340
FbaI TGATCA 1 cut(s) 220
FblI GTMKAC 1 cut(s) 841
Fnu4HI GCNGC 4 cut(s) 153, 167, 170, 695
FokI GGATG 4 cut(s) 396, 791, 940, 944
FriOI GRGCYC 3 cut(s) 162, 204, 235
Fsp4HI GCNGC 4 cut(s) 153, 167, 170, 695
FspBI CTAG 2 cut(s) 390, 612
GlaI GCGC 3 cut(s) 56, 173, 1025
GluI GCNGC 4 cut(s) 153, 167, 170, 695
GsuI CTGGAG 1 cut(s) 639
HaeII RGCGCY 1 cut(s) 58
HaeIII GGCC 4 cut(s) 70, 134, 594, 949
HapII CCGG 7 cut(s) 34, 52, 67, 156, 413, 861, 896
HgaI GACGC 1 cut(s) 945
HhaI GCGC 3 cut(s) 57, 174, 1026
Hin1I GRCGYC 2 cut(s) 44, 55
Hin1II CATG 9 cut(s) 192, 398, 533, 608, 630, 744, 819, 857, 1031
Hin6I GCGC 3 cut(s) 55, 172, 1024
HinP1I GCGC 3 cut(s) 55, 172, 1024
HindIII AAGCTT 2 cut(s) 728, 983
HinfI GANTC 7 cut(s) 23, 248, 398, 418, 526, 872, 907
HpaII CCGG 7 cut(s) 34, 52, 67, 156, 413, 861, 896
HphI GGTGA 5 cut(s) 56, 227, 427, 545, 767
Hpy166II GTNNAC 2 cut(s) 83, 842
Hpy188I TCNGA 8 cut(s) 130, 144, 217, 297, 304, 335, 691, 703
Hpy188III TCNNGA 3 cut(s) 266, 422, 656
Hpy8I GTNNAC 2 cut(s) 83, 842
Hpy99I CGWCG 5 cut(s) 33, 46, 49, 110, 256
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 3 cut(s) 17, 383, 479
HpyCH4IV ACGT 1 cut(s) 44
HpyCH4V TGCA 6 cut(s) 197, 372, 496, 626, 641, 823
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 166, 703
HpyF3I CTNAG 1 cut(s) 584
HpySE526I ACGT 1 cut(s) 44
Hsp92I GRCGYC 2 cut(s) 44, 55
Hsp92II CATG 9 cut(s) 192, 398, 533, 608, 630, 744, 819, 857, 1031
HspAI GCGC 3 cut(s) 55, 172, 1024
KasI GGCGCC 1 cut(s) 54
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 4 cut(s) 220, 538, 737, 1013
LmnI GCTCC 3 cut(s) 122, 615, 691
Lsp1109I GCAGC 3 cut(s) 156, 178, 706
LweI GCATC 1 cut(s) 587
MaeI CTAG 2 cut(s) 390, 612
MaeII ACGT 1 cut(s) 44
MaeIII GTNAC 3 cut(s) 377, 458, 808
MalI GATC 4 cut(s) 222, 540, 739, 1015
MbiI CCGCTC 1 cut(s) 618
MboI GATC 4 cut(s) 220, 538, 737, 1013
MboII GAAGA 4 cut(s) 218, 338, 708, 794
MflI RGATCY 1 cut(s) 1013
MhlI GDGCHC 3 cut(s) 162, 204, 235
MluCI AATT 4 cut(s) 278, 404, 466, 771
Mly113I GGCGCC 1 cut(s) 55
MlyI GAGTC 2 cut(s) 427, 535
MmeI TCCRAC 1 cut(s) 358
MseI TTAA 3 cut(s) 363, 765, 1035
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 7 cut(s) 34, 52, 67, 156, 413, 861, 896
MspR9I CCNGG 1 cut(s) 157
MwoI GCNNNNNNNGC 3 cut(s) 131, 166, 703
NarI GGCGCC 1 cut(s) 55
NciI CCSGG 1 cut(s) 157
NdeI CATATG 1 cut(s) 340
NdeII GATC 4 cut(s) 220, 538, 737, 1013
NlaIII CATG 9 cut(s) 192, 398, 533, 608, 630, 744, 819, 857, 1031
NlaIV GGNNCC 3 cut(s) 56, 124, 950
NmuCI GTSAC 1 cut(s) 377
NspI RCATGY 2 cut(s) 608, 630
NspV TTCGAA 1 cut(s) 401
PaeR7I CTCGAG 1 cut(s) 921
PceI AGGCCT 1 cut(s) 134
PciI ACATGT 1 cut(s) 604
PfeI GAWTC 5 cut(s) 23, 248, 398, 872, 907
PflMI CCANNNNNTGG 2 cut(s) 732, 752
PkrI GCNGC 4 cut(s) 154, 168, 171, 696
PleI GAGTC 2 cut(s) 426, 534
PluTI GGCGCC 1 cut(s) 58
PpsI GAGTC 2 cut(s) 426, 534
PscI ACATGT 1 cut(s) 604
Psp124BI GAGCTC 2 cut(s) 204, 235
PspN4I GGNNCC 3 cut(s) 56, 124, 950
PspPI GGNCC 1 cut(s) 948
PspXI VCTCGAGB 1 cut(s) 921
PstNI CAGNNNCTG 2 cut(s) 662, 712
PsuI RGATCY 1 cut(s) 1013
PvuII CAGCTG 1 cut(s) 169
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SacI GAGCTC 2 cut(s) 204, 235
SaqAI TTAA 3 cut(s) 363, 765, 1035
SatI GCNGC 4 cut(s) 153, 167, 170, 695
Sau3AI GATC 4 cut(s) 220, 538, 737, 1013
Sau96I GGNCC 1 cut(s) 948
SchI GAGTC 2 cut(s) 427, 535
ScrFI CCNGG 1 cut(s) 157
SduI GDGCHC 3 cut(s) 162, 204, 235
SfaNI GCATC 1 cut(s) 587
SfcI CTRYAG 1 cut(s) 507
SfoI GGCGCC 1 cut(s) 56
Sfr274I CTCGAG 1 cut(s) 921
SfuI TTCGAA 1 cut(s) 401
SlaI CTCGAG 1 cut(s) 921
SmlI CTYRAG 2 cut(s) 239, 921
SmoI CTYRAG 2 cut(s) 239, 921
Sse9I AATT 4 cut(s) 278, 404, 466, 771
SseBI AGGCCT 1 cut(s) 134
SsiI CCGC 3 cut(s) 20, 153, 618
SspDI GGCGCC 1 cut(s) 54
SspI AATATT 1 cut(s) 262
SspMI CTAG 2 cut(s) 390, 612
SstI GAGCTC 2 cut(s) 204, 235
StuI AGGCCT 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 155
TaaI ACNGT 3 cut(s) 17, 383, 479
TaiI ACGT 1 cut(s) 47
TaqI TCGA 3 cut(s) 229, 401, 922
TasI AATT 4 cut(s) 278, 404, 466, 771
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 5 cut(s) 23, 248, 398, 872, 907
Tru1I TTAA 3 cut(s) 363, 765, 1035
Tru9I TTAA 3 cut(s) 363, 765, 1035
TscAI CASTG 3 cut(s) 98, 388, 872
TseFI GTSAC 1 cut(s) 377
TseI GCWGC 3 cut(s) 166, 169, 694
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 7 cut(s) 17, 177, 357, 546, 795, 894, 944
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 3 cut(s) 98, 388, 872
Van91I CCANNNNNTGG 2 cut(s) 732, 752
XapI RAATTY 2 cut(s) 278, 404
XceI RCATGY 2 cut(s) 608, 630
XcmI CCANNNNNNNNNTGG 1 cut(s) 90
XhoI CTCGAG 1 cut(s) 921
XmiI GTMKAC 1 cut(s) 841
XspI CTAG 2 cut(s) 390, 612
ZraI GACGTC 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.