Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006389

Physical Location & Seq

Genomic Coordinates Reverse (-)

1985654 .. 1987120

Gene Structure 1467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG028500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGAACCCCTCAAACGGTGCGGATTCTCGTCGCCGGAAAACGACGTCGTACCGGCGCCACGCTCACCGGCCTCCGTCCAGTCCACTTCAGCACTGGAAGATCCACGACGACAAATCCACCGGAGCCTCCAAGGCCTCTGCTCGGAAGCTCGCCGCCGGGCTCTGGCAGCTGCGCTTCAGCGAAGTTTCATGGGGTGCAGAGCTCAACTCTGGTTCTGATGATCATCTTCGAGCTCACCTTGAGCTTGAATCGTCTTTGGGGTGTTCCAAATTGGGATTGGAGAGGGCAACAAAGTGGGATGCTTGCTGCTGGAATGAATCGGCTGAAATTTGTGGGGTTTATATGAAAGATTGTCGAGTGAATACTGTGTCTATGGTTTCGGCAGTGAATGATGAACTAATGAAAGCTAGATTGAGCATTCGAGAGCTTGAAGCTAAGCGGAGGTCTTTCAGGAAGAGAGTCAGACACTTTTTGAGGAAACTTGAAGAGGAAAGAGTGTTGCAGAAGCGCAGAGAACGCCAGAGAGATAGTGCGGTTATTAAGGAGTTGATGAAAGAACTAAGCAGGGAAAGGAGGAGTCGTCAACGGATGGAAAATCTTAGCACCAATCTGGTCAGTCGGTTAGCCAATGCAAAGTTGTCTGCAGACCAGTTCATGAAAACGTATGAGGAAGAGAAACAAAACAGAAGATTCATGGAACAAGTTTGTAGCGAACTAGCTGAACACATTGGAGAGAACAAGGCAGAATTGAAGGCATTGAAAAGAGAATCCATGAAAATTATTGATGAACTGGAAGAAGAGAGAAAGATGTTGCAGATGACTGAGGCTTGGCGTGAAGAACGAGTGCAGATGAAGCTGATTGATGCTAAACTGGCTCTTGAAGATAAATATCATCAGGTGAACAAGCTGATAACAGATGTTGAAACTTTCTTAAGGTCAAGATTCACTACCCTGGATATGCCGGAATTAAGAAAGGCTGAGTTGATCCTACAGGAAGTTAAGTCGTTGAATATTCAAGATATCGAGGAATTTACATATATTGCTCTGAAATCAGATGATATATTCTCTACTTTTGAAGAGTTCCGACCATATGAAGGTAAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

368

Amino Acids

43.23

Weight (kDa)

9.14

Isoelectric Point (pI)

62.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006389)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02210
malus_domestica	MD05G1345300.v1.1
prunus_persica	Prupe.4G021500_v2.0.a1
pyrus_communis	pycom05g31420
rosa_chinensis	RchiOBHm_Chr5g0003281
rosa_laevigata	RLG00000018061 RLG00000031103 RLG00000031104 RLG00000031121
rosa_multiflora	Rmu_co8274905.1_g000001 Rmu_sc0002494.1_g000002 Rmu_sc0002494.1_g000004 Rmu_sc0010917.1_g000009 Rmu_sc0010917.1_g000010
rosa_roxburghii	Rroxscaffold_1G00072680
rosa_rugosa	Rorug04G0401900 Rorug04G0402400
rosa_samantha	Rh5AG028400 Rh5AG028500 Rh5BG028600 Rh5CG030800 Rh5CG030900 Rh5DG027600 Rh5DG029000 Rh5DG029100
rosa_wichuraiana	Rw5G002650 Rw5G002700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	54
AciI	CCGC	4 cut(s)	20, 153, 439, 533
AclWI	GGATC	2 cut(s)	94, 979
AcsI	RAATTY	2 cut(s)	327, 1028
AcuI	CTGAAG	2 cut(s)	71, 160
AcyI	GRCGYC	2 cut(s)	44, 55
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	4 cut(s)	14, 141, 162, 1094
AflII	CTTAAG	1 cut(s)	931
AjnI	CCWGG	1 cut(s)	951
Alw21I	GWGCWC	2 cut(s)	204, 235
AlwI	GGATC	2 cut(s)	94, 979
AoxI	GGCC	2 cut(s)	68, 132
ApeKI	GCWGC	3 cut(s)	166, 169, 306
ApoI	RAATTY	2 cut(s)	327, 1028
AspLEI	GCGC	3 cut(s)	57, 174, 510
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	3 cut(s)	56, 227, 910
BanI	GGYRCC	1 cut(s)	54
BanII	GRGCYC	3 cut(s)	162, 204, 235
Bbv12I	GWGCWC	2 cut(s)	204, 235
BbvI	GCAGC	3 cut(s)	156, 178, 293
BccI	CCATC	1 cut(s)	583
BciT130I	CCWGG	1 cut(s)	953
BclI	TGATCA	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	157
BfaI	CTAG	2 cut(s)	408, 716
BfmI	CTRYAG	2 cut(s)	642, 989
BfoI	RGCGCY	1 cut(s)	58
BfrI	CTTAAG	1 cut(s)	931
BglI	GCCNNNNNGGC	1 cut(s)	131
BisI	GCNGC	4 cut(s)	153, 167, 170, 307
BlpI	GCTNAGC	1 cut(s)	435
BlsI	GCNGC	4 cut(s)	154, 168, 171, 308
Bme1390I	CCNGG	2 cut(s)	157, 953
BmiI	GGNNCC	2 cut(s)	56, 124
BmrFI	CCNGG	2 cut(s)	157, 953
BmsI	GCATC	2 cut(s)	289, 853
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
Bpu1102I	GCTNAGC	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	157
BsaBI	GATNNNNATC	2 cut(s)	222, 888
BsaHI	GRCGYC	2 cut(s)	44, 55
BsaJI	CCNNGG	2 cut(s)	129, 951
BsaWI	WCCGGW	1 cut(s)	119
BsaXI	ACNNNNNCTCC	2 cut(s)	565, 595
Bsc4I	CCNNNNNNNGG	4 cut(s)	14, 141, 162, 1094
Bse118I	RCCGGY	2 cut(s)	51, 66
Bse1I	ACTGG	5 cut(s)	78, 98, 649, 795, 876
Bse8I	GATNNNNATC	2 cut(s)	222, 888
BseBI	CCWGG	1 cut(s)	953
BseDI	CCNNGG	2 cut(s)	129, 951
BseGI	GGATG	2 cut(s)	304, 594
BseJI	GATNNNNATC	2 cut(s)	222, 888
BseLI	CCNNNNNNNGG	4 cut(s)	14, 141, 162, 1094
BseMII	CTCAG	2 cut(s)	813, 969
BseNI	ACTGG	5 cut(s)	78, 98, 649, 795, 876
BseRI	GAGGAG	1 cut(s)	589
BseXI	GCAGC	3 cut(s)	156, 178, 293
BsgI	GTGCAG	2 cut(s)	216, 866
BshFI	GGCC	2 cut(s)	70, 134
BshNI	GGYRCC	1 cut(s)	54
BsiHKAI	GWGCWC	2 cut(s)	204, 235
BsiSI	CCGG	6 cut(s)	34, 52, 67, 120, 156, 962
BslI	CCNNNNNNNGG	4 cut(s)	14, 141, 162, 1094
BsmI	GAATGC	1 cut(s)	417
BsnI	GGCC	2 cut(s)	70, 134
Bsp1286I	GDGCHC	3 cut(s)	162, 204, 235
Bsp143I	GATC	3 cut(s)	99, 220, 984
Bsp1720I	GCTNAGC	1 cut(s)	435
BspACI	CCGC	4 cut(s)	20, 153, 439, 533
BspANI	GGCC	2 cut(s)	70, 134
BspCNI	CTCAG	2 cut(s)	814, 970
BspHI	TCATGA	1 cut(s)	654
BspLI	GGNNCC	2 cut(s)	56, 124
BspMAI	CTGCAG	1 cut(s)	646
BspPI	GGATC	2 cut(s)	94, 979
BspT107I	GGYRCC	1 cut(s)	54
BspTI	CTTAAG	1 cut(s)	931
BsrFI	RCCGGY	2 cut(s)	51, 66
BsrI	ACTGG	5 cut(s)	78, 98, 649, 795, 876
BssAI	RCCGGY	2 cut(s)	51, 66
BssECI	CCNNGG	2 cut(s)	129, 951
BssMI	GATC	3 cut(s)	99, 220, 984
BssNI	GRCGYC	2 cut(s)	44, 55
BssT1I	CCWWGG	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	953
Bst4CI	ACNGT	2 cut(s)	17, 367
Bst6I	CTCTTC	5 cut(s)	449, 480, 666, 792, 1071
BstACI	GRCGYC	2 cut(s)	44, 55
BstAFI	CTTAAG	1 cut(s)	931
BstC8I	GCNNGC	2 cut(s)	150, 304
BstDEI	CTNAG	5 cut(s)	435, 560, 599, 822, 978
BstF5I	GGATG	2 cut(s)	304, 594
BstH2I	RGCGCY	1 cut(s)	58
BstHHI	GCGC	3 cut(s)	57, 174, 510
BstKTI	GATC	3 cut(s)	102, 223, 987
BstMBI	GATC	3 cut(s)	99, 220, 984
BstMWI	GCNNNNNNNGC	5 cut(s)	131, 166, 516, 853, 872
BstNI	CCWGG	1 cut(s)	953
BstSCI	CCNGG	2 cut(s)	155, 951
BstSFI	CTRYAG	2 cut(s)	642, 989
BstV1I	GCAGC	3 cut(s)	156, 178, 293
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BsuRI	GGCC	2 cut(s)	70, 134
BtsCI	GGATG	2 cut(s)	304, 594
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	2 cut(s)	91, 390
Cac8I	GCNNGC	2 cut(s)	150, 304
CciI	TCATGA	1 cut(s)	654
CfoI	GCGC	3 cut(s)	57, 174, 510
Cfr10I	RCCGGY	2 cut(s)	51, 66
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	4 cut(s)	189, 655, 694, 772
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	5 cut(s)	435, 560, 599, 822, 978
DinI	GGCGCC	1 cut(s)	56
DpnI	GATC	3 cut(s)	101, 222, 986
DpnII	GATC	3 cut(s)	99, 220, 984
Eam1104I	CTCTTC	5 cut(s)	449, 480, 666, 792, 1071
EarI	CTCTTC	5 cut(s)	449, 480, 666, 792, 1071
Ecl136II	GAGCTC	2 cut(s)	202, 233
Eco130I	CCWWGG	1 cut(s)	129
Eco147I	AGGCCT	1 cut(s)	134
Eco24I	GRGCYC	3 cut(s)	162, 204, 235
Eco32I	GATATC	1 cut(s)	1021
Eco53kI	GAGCTC	2 cut(s)	202, 233
Eco57I	CTGAAG	2 cut(s)	71, 160
EcoICRI	GAGCTC	2 cut(s)	202, 233
EcoRII	CCWGG	1 cut(s)	951
EcoRV	GATATC	1 cut(s)	1021
EcoT14I	CCWWGG	1 cut(s)	129
EcoT38I	GRGCYC	3 cut(s)	162, 204, 235
EgeI	GGCGCC	1 cut(s)	56
EheI	GGCGCC	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	4 cut(s)	192, 658, 697, 775
FatI	CATG	4 cut(s)	188, 654, 693, 771
FauNDI	CATATG	1 cut(s)	1090
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	4 cut(s)	153, 167, 170, 307
FokI	GGATG	2 cut(s)	311, 601
FriOI	GRGCYC	3 cut(s)	162, 204, 235
Fsp4HI	GCNGC	4 cut(s)	153, 167, 170, 307
FspBI	CTAG	2 cut(s)	408, 716
GlaI	GCGC	3 cut(s)	56, 173, 509
GluI	GCNGC	4 cut(s)	153, 167, 170, 307
HaeII	RGCGCY	1 cut(s)	58
HaeIII	GGCC	2 cut(s)	70, 134
HapII	CCGG	6 cut(s)	34, 52, 67, 120, 156, 962
HhaI	GCGC	3 cut(s)	57, 174, 510
Hin1I	GRCGYC	2 cut(s)	44, 55
Hin1II	CATG	4 cut(s)	192, 658, 697, 775
Hin6I	GCGC	3 cut(s)	55, 172, 508
HinP1I	GCGC	3 cut(s)	55, 172, 508
HincII	GTYRAC	1 cut(s)	584
HindII	GTYRAC	1 cut(s)	584
HinfI	GANTC	8 cut(s)	23, 248, 317, 459, 577, 690, 767, 942
HpaII	CCGG	6 cut(s)	34, 52, 67, 120, 156, 962
HphI	GGTGA	3 cut(s)	56, 227, 910
Hpy166II	GTNNAC	3 cut(s)	83, 584, 901
Hpy188I	TCNGA	6 cut(s)	144, 217, 464, 1047, 1054, 1085
Hpy188III	TCNNGA	6 cut(s)	422, 451, 655, 878, 939, 1016
Hpy8I	GTNNAC	3 cut(s)	83, 584, 901
Hpy99I	CGWCG	4 cut(s)	33, 46, 49, 110
HpyAV	CCTTC	2 cut(s)	745, 1088
HpyCH4III	ACNGT	2 cut(s)	17, 367
HpyCH4IV	ACGT	2 cut(s)	44, 662
HpyCH4V	TGCA	6 cut(s)	197, 502, 632, 644, 814, 847
HpyF10VI	GCNNNNNNNGC	5 cut(s)	131, 166, 516, 853, 872
HpyF3I	CTNAG	5 cut(s)	435, 560, 599, 822, 978
HpySE526I	ACGT	2 cut(s)	44, 662
Hsp92I	GRCGYC	2 cut(s)	44, 55
Hsp92II	CATG	4 cut(s)	192, 658, 697, 775
HspAI	GCGC	3 cut(s)	55, 172, 508
KasI	GGCGCC	1 cut(s)	54
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	99, 220, 984
LmnI	GCTCC	1 cut(s)	122
Lsp1109I	GCAGC	3 cut(s)	156, 178, 293
LweI	GCATC	2 cut(s)	289, 853
MaeI	CTAG	2 cut(s)	408, 716
MaeII	ACGT	2 cut(s)	44, 662
MalI	GATC	3 cut(s)	101, 222, 986
MboI	GATC	3 cut(s)	99, 220, 984
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	3 cut(s)	162, 204, 235
MluCI	AATT	6 cut(s)	269, 327, 746, 777, 965, 1028
Mly113I	GGCGCC	1 cut(s)	55
MlyI	GAGTC	2 cut(s)	468, 586
MseI	TTAA	4 cut(s)	540, 932, 968, 999
MspA1I	CMGCKG	1 cut(s)	169
MspCI	CTTAAG	1 cut(s)	931
MspI	CCGG	6 cut(s)	34, 52, 67, 120, 156, 962
MspR9I	CCNGG	2 cut(s)	157, 953
Mva1269I	GAATGC	1 cut(s)	417
MvaI	CCWGG	1 cut(s)	953
MwoI	GCNNNNNNNGC	5 cut(s)	131, 166, 516, 853, 872
NarI	GGCGCC	1 cut(s)	55
NciI	CCSGG	1 cut(s)	157
NdeI	CATATG	1 cut(s)	1090
NdeII	GATC	3 cut(s)	99, 220, 984
NlaIII	CATG	4 cut(s)	192, 658, 697, 775
NlaIV	GGNNCC	2 cut(s)	56, 124
PagI	TCATGA	1 cut(s)	654
PceI	AGGCCT	1 cut(s)	134
PctI	GAATGC	1 cut(s)	417
PfeI	GAWTC	6 cut(s)	23, 248, 317, 690, 767, 942
PkrI	GCNGC	4 cut(s)	154, 168, 171, 308
PleI	GAGTC	2 cut(s)	467, 585
PluTI	GGCGCC	1 cut(s)	58
PpsI	GAGTC	2 cut(s)	467, 585
Psp124BI	GAGCTC	2 cut(s)	204, 235
Psp6I	CCWGG	1 cut(s)	951
PspGI	CCWGG	1 cut(s)	951
PspN4I	GGNNCC	2 cut(s)	56, 124
PstI	CTGCAG	1 cut(s)	646
PsuI	RGATCY	1 cut(s)	99
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SacI	GAGCTC	2 cut(s)	204, 235
SaqAI	TTAA	4 cut(s)	540, 932, 968, 999
SatI	GCNGC	4 cut(s)	153, 167, 170, 307
Sau3AI	GATC	3 cut(s)	99, 220, 984
SchI	GAGTC	2 cut(s)	468, 586
ScrFI	CCNGG	2 cut(s)	157, 953
SduI	GDGCHC	3 cut(s)	162, 204, 235
SfaNI	GCATC	2 cut(s)	289, 853
SfcI	CTRYAG	2 cut(s)	642, 989
SfoI	GGCGCC	1 cut(s)	56
SmlI	CTYRAG	2 cut(s)	239, 931
SmoI	CTYRAG	2 cut(s)	239, 931
Sse9I	AATT	6 cut(s)	269, 327, 746, 777, 965, 1028
SseBI	AGGCCT	1 cut(s)	134
SsiI	CCGC	4 cut(s)	20, 153, 439, 533
SspDI	GGCGCC	1 cut(s)	54
SspI	AATATT	1 cut(s)	1012
SspMI	CTAG	2 cut(s)	408, 716
SstI	GAGCTC	2 cut(s)	204, 235
StuI	AGGCCT	1 cut(s)	134
StyD4I	CCNGG	2 cut(s)	155, 951
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	17, 367
TaiI	ACGT	2 cut(s)	47, 665
TaqI	TCGA	4 cut(s)	229, 355, 421, 1023
TasI	AATT	6 cut(s)	269, 327, 746, 777, 965, 1028
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	6 cut(s)	23, 248, 317, 690, 767, 942
Tru1I	TTAA	4 cut(s)	540, 932, 968, 999
Tru9I	TTAA	4 cut(s)	540, 932, 968, 999
TscAI	CASTG	2 cut(s)	98, 390
TseI	GCWGC	3 cut(s)	166, 169, 306
TspGWI	ACGGA	2 cut(s)	63, 601
TspRI	CASTG	2 cut(s)	98, 390
Vha464I	CTTAAG	1 cut(s)	931
XapI	RAATTY	2 cut(s)	327, 1028
XcmI	CCANNNNNNNNNTGG	2 cut(s)	90, 274
XspI	CTAG	2 cut(s)	408, 716
ZraI	GACGTC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.