Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003180

Physical Location & Seq

Genomic Coordinates Reverse (-)

28397708 .. 28399780

Gene Structure 2073 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018331

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1977 bp

ATGCCGAATTTGAAACGCTGCAAGCTGAAAGAGGCCGCGAATCCGAAGAGACGGAAAACGAATGGGGGGTATTACTCAATCGAAGATTTCAGCAGCGGCTCCAGTTCTCTGGAATATGACGAGTCGTTTTCTGCTGCCGTCGAGGTCAACCGGCCAGCAATGAATCAGATCAGCTCTGGCAAGTTTCAGAGGTCAGCTCGAGGTCGCGCGCAAGTGCCTTCTTCAGTTGATTTATATGAAAAAAAGCAAGCTAAAGCTATGAAAATAGTGAAGGGCTCAGGTTCTGAAACCCAAGTTTTATGTAGACATTGTGCAACGTTGAAAAAATCAAAACAACATTGTGGCATATGTAAGAAGATAGGGCAATATTCAAATGGTGGAGATTGGGTGCATGCTGACTTTTCCAGTGAAGTTTTCAAGGACCTGGAGCACATTGATTGCAAAAATAAGGAATGTGAATCGTCAGATGTGACCGGCGTAACTGTGGTTTGTAATGGCATGGAAGGAACATATGTGCCAAACCTTCATATGGTTGCTTGTAAGTGTGGAGCGTGTGATGAGTCAAAGATGCGGAGCCTTGGTGAATGGGAAAGGCACACAGGTTGTAGAGCAAAGAAATGGAAGCATAGTGTGAAAGTGAAGGCCACAATGCTAACACTGGAACAATGGATTGCGCAGTATAATGAACTTGGTTTAGATAAGCAGCAACTACTTGATTCCTTACAAGAAAAGTGTCAAATAGCTGTGCACCAAGAATGCTATGGTGCAAAACATGTCCAGGATTTTACTTCATGGGTTTGCAGGGCATGTGAAACACCTGATAACGTTAGAGAGTGTTGTCTCTGTCCAGTGAAAGGAGGTGCTTTGAAGCCCACTGATGTTGACACCTTGTGGGTTCATGTCTCTTGTGCTTGGTTTCATCCCGAAATAGGTTTCTTGAATCATGAGAAGATGGAACCTGCTGTTGGAATCCTTAGAATCCCACCCACTACTTTTCTGAAGCGTTGTGTAATTTGTGCGCAGACTCATGGTTCCTGCACCACATGTTGCAAATGTGCCACTCATTTTCATGCAACCTGTGCATCAAGAGCAGGCTACAGCATGGAGTTGCACTGCCAGGTGGGGAAGAATGGGAAACAAGTAACAACCAAGTTGATATATTGTGCGGTGCACAGGACTCCCAATCCAGAAGCTGTTATCGTTGTTCATACTCCTTCAGGGGTTTTTGCTGCCAGAAGCTTGCTTCGAAACGAGAAAGGGTTCTTCAGGGGTTCGAGGGTGGTGTCATCAAAGAAAACTGAAGTTTCAGAACCTTCAACCTCACAGTCTTATGAGTTAGAACCAGCACTCTCTGCTGCAAGATGCCGTGCTATTAAAAGATCAAATTTTAAGGGAGGTGAGCGGCTACCAATTTTTCATCGACCAAGGGGACCAACACACCATTCATCAGACGAAGTAAATAGCTTGAGCACATTTAAAGAAGTAGAAGATTCTAAAATTTTTTCTTCGTTCAAGGATCGGCTTCACCACTTGCAGAAAACTGAAAATCACCGGGTTTGTTTTGGTAAATCTGGAATACATGGATGGGGTCTATTTGCACGTAGGAATATTCAAGAAGGAGAAATGGTTGTTGAGTATCGTGGTGAGCGGGTAAGACGTAGCATTGCAGATCTGAGGGAAGCACGGTACAGGCAACAAGGCAAAGATTGCTATCTTTTCAAGATCAGCGAGGAAGTAGTAATTGATGCTACATGTAAAGGAAATGTAGCACGGTTAATTAACCATTCGTGCATGCCTAATTGCTATTCAAGGATCGTGACTGTGGGTGAGGAGAACCGAATTGTTCTCATTGCCAAAATTAATGTTTCGGCTGGTGAAGAACTAACGTACGATTACTTGTTTGAGCAGGATGAATGTGACGAGCTCAGAGTTCCCTGTCTATGTAAAGCTCCCAACTGTAGGAAATTCTTGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009893 GO:0010604 GO:0010638 GO:0019222 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0060255 GO:0065007 GO:0080090 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD PHD_2 PWWP SAND SET zf-HC5HC2H_2

Protein Analysis

659

Amino Acids

73.9

Weight (kDa)

8.84

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD_2	PF13831	244 - 271	3.5e-08	PHD-finger
zf-HC5HC2H_2	PF13832	278 - 391	1.3e-25	PHD-zinc-finger like domain
zf-HC5HC2H	PF13771	300 - 392	1.6e-10	PHD-like zinc-binding domain
SET	PF00856	528 - 632	1.4e-26	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61740 AT3G61740
fragaria_vesca	FvH4_1g22790 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370
malus_domestica	MD01G1080200.v1.1
prunus_persica	Prupe.2G187600_v2.0.a1
pyrus_communis	pycom01g10850
rosa_chinensis	RchiOBHm_Chr1g0359381 RchiOBHm_Chr2g0117111
rosa_laevigata	RLG00000018331 RLG00000027874
rosa_multiflora	Rmu_sc0005833.1_g000005 Rmu_ssc0000358.1_g000003
rosa_roxburghii	Rroxscaffold_2G00126700 Rroxscaffold_4G00297040
rosa_rugosa	Rorug01G0270700 Rorug01G0270800 Rorug02G0210600.1
rosa_samantha	Rh1AG284200 Rh1BG250300 Rh1CG268200 Rh1DG279200 Rh2AG266300 Rh2BG278700 Rh2DG273500 Rh2DG292600
rosa_wichuraiana	Rw1G025230 Rw2G021020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	675, 1020
Acc36I	ACCTGC	1 cut(s)	967
AccBSI	CCGCTC	2 cut(s)	1402, 1648
AccI	GTMKAC	1 cut(s)	304
AccII	CGCG	3 cut(s)	38, 207, 209
AciI	CCGC	6 cut(s)	36, 96, 571, 1166, 1402, 1648
AclI	AACGTT	2 cut(s)	317, 825
AclWI	GGATC	2 cut(s)	1524, 1820
AcoI	YGGCCR	1 cut(s)	152
AcsI	RAATTY	4 cut(s)	7, 1384, 1497, 1964
AcuI	CTGAAG	5 cut(s)	207, 1019, 1200, 1249, 1320
AdeI	CACNNNGTG	1 cut(s)	891
AfaI	GTAC	2 cut(s)	1688, 1889
AfiI	CCNNNNNNNGG	5 cut(s)	529, 854, 929, 965, 1959
AflIII	ACRYGT	3 cut(s)	772, 1043, 1751
AjnI	CCWGG	3 cut(s)	423, 777, 1116
AjuI	GAANNNNNNNTTGG	4 cut(s)	948, 980, 1426, 1458
Alw21I	GWGCWC	5 cut(s)	432, 750, 1173, 1472, 1926
Alw26I	GTCTC	3 cut(s)	43, 845, 907
Alw44I	GTGCAC	2 cut(s)	746, 1169
AlwI	GGATC	2 cut(s)	1524, 1820
AlwNI	CAGNNNCTG	2 cut(s)	284, 1193
Ama87I	CYCGRG	1 cut(s)	198
AoxI	GGCC	3 cut(s)	33, 152, 642
ApaLI	GTGCAC	2 cut(s)	746, 1169
ApeKI	GCWGC	6 cut(s)	18, 93, 134, 703, 1229, 1355
ApoI	RAATTY	4 cut(s)	7, 1384, 1497, 1964
AseI	ATTAAT	1 cut(s)	1860
Asp700I	GAANNNNTTC	1 cut(s)	1259
AspLEI	GCGC	4 cut(s)	209, 211, 676, 1021
AspS9I	GGNCC	2 cut(s)	421, 1430
AsuC2I	CCSGG	1 cut(s)	1553
AsuHPI	GGTGA	7 cut(s)	593, 1409, 1517, 1541, 1655, 1838, 1886
AsuII	TTCGAA	1 cut(s)	1246
AvaI	CYCGRG	1 cut(s)	198
AvaII	GGWCC	2 cut(s)	421, 1430
BaeGI	GKGCMC	2 cut(s)	750, 1173
BanII	GRGCYC	2 cut(s)	278, 1926
Bbv12I	GWGCWC	5 cut(s)	432, 750, 1173, 1472, 1926
BbvI	GCAGC	6 cut(s)	5, 105, 121, 715, 1216, 1342
BccI	CCATC	2 cut(s)	946, 1578
BceAI	ACGGC	2 cut(s)	122, 1350
BciT130I	CCWGG	3 cut(s)	425, 779, 1118
BcnI	CCSGG	1 cut(s)	1553
BcoDI	GTCTC	3 cut(s)	43, 845, 907
BfmI	CTRYAG	2 cut(s)	1096, 1957
BfuAI	ACCTGC	1 cut(s)	967
BglII	AGATCT	1 cut(s)	1669
BisI	GCNGC	9 cut(s)	19, 36, 94, 97, 135, 704, 1230, 1356, 1403
BlsI	GCNGC	9 cut(s)	20, 37, 95, 98, 136, 705, 1231, 1357, 1404
Bme1390I	CCNGG	4 cut(s)	425, 779, 1118, 1553
Bme18I	GGWCC	2 cut(s)	421, 1430
BmeT110I	CYCGRG	1 cut(s)	198
BmgT120I	GGNCC	2 cut(s)	421, 1430
BmiI	GGNNCC	5 cut(s)	100, 575, 957, 1033, 1431
BmrFI	CCNGG	4 cut(s)	425, 779, 1118, 1553
BmsI	GCATC	4 cut(s)	558, 1091, 1352, 1735
BplI	GAGNNNNNCTC	2 cut(s)	181, 213
BpmI	CTGGAG	2 cut(s)	85, 446
Bpu10I	CCTNAGC	1 cut(s)	277
Bpu14I	TTCGAA	1 cut(s)	1246
BpuEI	CTTGAG	1 cut(s)	1486
BpuMI	CCSGG	1 cut(s)	1553
BsaAI	YACGTR	1 cut(s)	1601
BsaBI	GATNNNNATC	1 cut(s)	1710
BsaJI	CCNNGG	2 cut(s)	577, 1424
BsaXI	ACNNNNNCTCC	6 cut(s)	372, 402, 565, 595, 1611, 1641
Bsc4I	CCNNNNNNNGG	5 cut(s)	529, 854, 929, 965, 1959
Bse118I	RCCGGY	2 cut(s)	150, 473
Bse1I	ACTGG	4 cut(s)	102, 405, 663, 848
Bse3DI	GCAATG	3 cut(s)	165, 1662, 1848
Bse8I	GATNNNNATC	1 cut(s)	1710
BseBI	CCWGG	3 cut(s)	425, 779, 1118
BseDI	CCNNGG	2 cut(s)	577, 1424
BseGI	GGATG	3 cut(s)	919, 1589, 1915
BseJI	GATNNNNATC	1 cut(s)	1710
BseLI	CCNNNNNNNGG	5 cut(s)	529, 854, 929, 965, 1959
BseMI	GCAATG	3 cut(s)	165, 1662, 1848
BseMII	CTCAG	3 cut(s)	291, 1664, 1939
BseNI	ACTGG	4 cut(s)	102, 405, 663, 848
BsePI	GCGCGC	1 cut(s)	207
BseRI	GAGGAG	1 cut(s)	1844
BseSI	GKGCMC	2 cut(s)	750, 1173
BseXI	GCAGC	6 cut(s)	5, 105, 121, 715, 1216, 1342
BsgI	GTGCAG	1 cut(s)	1021
Bsh1236I	CGCG	3 cut(s)	38, 207, 209
BshFI	GGCC	3 cut(s)	35, 154, 644
BsiHKAI	GWGCWC	5 cut(s)	432, 750, 1173, 1472, 1926
BsiHKCI	CYCGRG	1 cut(s)	198
BsiSI	CCGG	3 cut(s)	151, 474, 1552
BsiWI	CGTACG	1 cut(s)	1887
BslFI	GGGAC	1 cut(s)	1443
BslI	CCNNNNNNNGG	5 cut(s)	529, 854, 929, 965, 1959
BsmAI	GTCTC	3 cut(s)	43, 845, 907
BsmBI	CGTCTC	1 cut(s)	43
BsmFI	GGGAC	1 cut(s)	1443
BsmI	GAATGC	1 cut(s)	761
BsnI	GGCC	3 cut(s)	35, 154, 644
BsoBI	CYCGRG	1 cut(s)	198
Bsp119I	TTCGAA	1 cut(s)	1246
Bsp1286I	GDGCHC	6 cut(s)	278, 432, 750, 1173, 1472, 1926
Bsp143I	GATC	6 cut(s)	168, 1379, 1516, 1669, 1722, 1812
BspACI	CCGC	6 cut(s)	36, 96, 571, 1166, 1402, 1648
BspANI	GGCC	3 cut(s)	35, 154, 644
BspCNI	CTCAG	3 cut(s)	290, 1665, 1938
BspFNI	CGCG	3 cut(s)	38, 207, 209
BspHI	TCATGA	1 cut(s)	943
BspLI	GGNNCC	5 cut(s)	100, 575, 957, 1033, 1431
BspMI	ACCTGC	1 cut(s)	967
BspPI	GGATC	2 cut(s)	1524, 1820
BspT104I	TTCGAA	1 cut(s)	1246
BsrBI	CCGCTC	2 cut(s)	1402, 1648
BsrDI	GCAATG	3 cut(s)	165, 1662, 1848
BsrFI	RCCGGY	2 cut(s)	150, 473
BsrI	ACTGG	4 cut(s)	102, 405, 663, 848
BssAI	RCCGGY	2 cut(s)	150, 473
BssECI	CCNNGG	2 cut(s)	577, 1424
BssHII	GCGCGC	1 cut(s)	207
BssMI	GATC	6 cut(s)	168, 1379, 1516, 1669, 1722, 1812
BssT1I	CCWWGG	2 cut(s)	577, 1424
Bst2UI	CCWGG	3 cut(s)	425, 779, 1118
Bst4CI	ACNGT	6 cut(s)	484, 1326, 1686, 1773, 1822, 1958
Bst6I	CTCTTC	1 cut(s)	41
BstAPI	GCANNNNNTGC	3 cut(s)	1079, 1352, 1707
BstBAI	YACGTR	1 cut(s)	1601
BstBI	TTCGAA	1 cut(s)	1246
BstC8I	GCNNGC	8 cut(s)	23, 156, 209, 249, 393, 1093, 1241, 1793
BstDEI	CTNAG	4 cut(s)	277, 974, 1673, 1925
BstF5I	GGATG	3 cut(s)	919, 1589, 1915
BstFNI	CGCG	3 cut(s)	38, 207, 209
BstHHI	GCGC	4 cut(s)	209, 211, 676, 1021
BstKTI	GATC	6 cut(s)	171, 1382, 1519, 1672, 1725, 1815
BstMAI	GTCTC	3 cut(s)	43, 845, 907
BstMBI	GATC	6 cut(s)	168, 1379, 1516, 1669, 1722, 1812
BstMWI	GCNNNNNNNGC	4 cut(s)	1079, 1088, 1352, 1707
BstNI	CCWGG	3 cut(s)	425, 779, 1118
BstNSI	RCATGY	6 cut(s)	395, 776, 810, 1047, 1755, 1795
BstSCI	CCNGG	4 cut(s)	423, 777, 1116, 1551
BstSFI	CTRYAG	2 cut(s)	1096, 1957
BstSLI	GKGCMC	2 cut(s)	750, 1173
BstUI	CGCG	3 cut(s)	38, 207, 209
BstV1I	GCAGC	6 cut(s)	5, 105, 121, 715, 1216, 1342
BstX2I	RGATCY	1 cut(s)	1669
BstXI	CCANNNNNNTGG	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	1669
BsuRI	GGCC	3 cut(s)	35, 154, 644
BtsCI	GGATG	3 cut(s)	919, 1589, 1915
BtsI	GCAGTG	1 cut(s)	1111
BtsIMutI	CAGTG	5 cut(s)	412, 656, 855, 873, 1111
BveI	ACCTGC	1 cut(s)	967
Cac8I	GCNNGC	8 cut(s)	23, 156, 209, 249, 393, 1093, 1241, 1793
CaiI	CAGNNNCTG	2 cut(s)	284, 1193
CciI	TCATGA	1 cut(s)	943
CfoI	GCGC	4 cut(s)	209, 211, 676, 1021
Cfr10I	RCCGGY	2 cut(s)	150, 473
Cfr13I	GGNCC	2 cut(s)	421, 1430
Csp6I	GTAC	2 cut(s)	1687, 1888
CspCI	CAANNNNNGTGG	2 cut(s)	862, 897
CviQI	GTAC	2 cut(s)	1687, 1888
DdeI	CTNAG	4 cut(s)	277, 974, 1673, 1925
DpnI	GATC	6 cut(s)	170, 1381, 1518, 1671, 1724, 1814
DpnII	GATC	6 cut(s)	168, 1379, 1516, 1669, 1722, 1812
DraI	TTTAAA	1 cut(s)	1477
DraIII	CACNNNGTG	1 cut(s)	891
EaeI	YGGCCR	1 cut(s)	152
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Ecl136II	GAGCTC	1 cut(s)	1924
Eco130I	CCWWGG	2 cut(s)	577, 1424
Eco24I	GRGCYC	2 cut(s)	278, 1926
Eco47I	GGWCC	2 cut(s)	421, 1430
Eco53kI	GAGCTC	1 cut(s)	1924
Eco57I	CTGAAG	5 cut(s)	207, 1019, 1200, 1249, 1320
Eco88I	CYCGRG	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	1924
EcoO109I	RGGNCCY	1 cut(s)	421
EcoRII	CCWGG	3 cut(s)	423, 777, 1116
EcoT14I	CCWWGG	2 cut(s)	577, 1424
EcoT38I	GRGCYC	2 cut(s)	278, 1926
ErhI	CCWWGG	2 cut(s)	577, 1424
Esp3I	CGTCTC	1 cut(s)	43
FaqI	GGGAC	1 cut(s)	1443
FauI	CCCGC	1 cut(s)	1641
FauNDI	CATATG	3 cut(s)	347, 511, 528
FblI	GTMKAC	1 cut(s)	304
Fnu4HI	GCNGC	9 cut(s)	19, 36, 94, 97, 135, 704, 1230, 1356, 1403
FokI	GGATG	3 cut(s)	906, 1596, 1922
FriOI	GRGCYC	2 cut(s)	278, 1926
Fsp4HI	GCNGC	9 cut(s)	19, 36, 94, 97, 135, 704, 1230, 1356, 1403
FspI	TGCGCA	2 cut(s)	675, 1020
GlaI	GCGC	4 cut(s)	208, 210, 675, 1020
GluI	GCNGC	9 cut(s)	19, 36, 94, 97, 135, 704, 1230, 1356, 1403
GsuI	CTGGAG	2 cut(s)	85, 446
HaeIII	GGCC	3 cut(s)	35, 154, 644
HapII	CCGG	3 cut(s)	151, 474, 1552
HhaI	GCGC	4 cut(s)	209, 211, 676, 1021
Hin6I	GCGC	4 cut(s)	207, 209, 674, 1019
HinP1I	GCGC	4 cut(s)	207, 209, 674, 1019
HincII	GTYRAC	2 cut(s)	148, 883
HindII	GTYRAC	2 cut(s)	148, 883
HindIII	AAGCTT	1 cut(s)	1237
HpaII	CCGG	3 cut(s)	151, 474, 1552
HphI	GGTGA	7 cut(s)	593, 1409, 1517, 1541, 1655, 1838, 1886
Hpy166II	GTNNAC	5 cut(s)	148, 305, 748, 883, 1171
Hpy8I	GTNNAC	5 cut(s)	148, 305, 748, 883, 1171
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	8 cut(s)	228, 265, 497, 533, 634, 1224, 1323, 1610
HpyCH4III	ACNGT	6 cut(s)	484, 1326, 1686, 1773, 1822, 1958
HpyCH4IV	ACGT	5 cut(s)	317, 825, 1600, 1657, 1886
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1079, 1088, 1352, 1707
HpyF3I	CTNAG	4 cut(s)	277, 974, 1673, 1925
HpySE526I	ACGT	5 cut(s)	317, 825, 1600, 1657, 1886
HspAI	GCGC	4 cut(s)	207, 209, 674, 1019
Kzo9I	GATC	6 cut(s)	168, 1379, 1516, 1669, 1722, 1812
LmnI	GCTCC	5 cut(s)	104, 427, 548, 573, 1954
Lsp1109I	GCAGC	6 cut(s)	5, 105, 121, 715, 1216, 1342
LweI	GCATC	4 cut(s)	558, 1091, 1352, 1735
MaeII	ACGT	5 cut(s)	317, 825, 1600, 1657, 1886
MaeIII	GTNAC	5 cut(s)	469, 478, 1141, 1816, 1916
MalI	GATC	6 cut(s)	170, 1381, 1518, 1671, 1724, 1814
MbiI	CCGCTC	2 cut(s)	1402, 1648
MboI	GATC	6 cut(s)	168, 1379, 1516, 1669, 1722, 1812
MflI	RGATCY	1 cut(s)	1669
MhlI	GDGCHC	6 cut(s)	278, 432, 750, 1173, 1472, 1926
MlyI	GAGTC	4 cut(s)	131, 569, 1018, 1171
MmeI	TCCRAC	1 cut(s)	946
MroXI	GAANNNNTTC	1 cut(s)	1259
MseI	TTAA	6 cut(s)	1374, 1389, 1476, 1775, 1779, 1860
MslI	CAYNNNNRTG	1 cut(s)	1068
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	3 cut(s)	151, 474, 1552
MspR9I	CCNGG	4 cut(s)	425, 779, 1118, 1553
Mva1269I	GAATGC	1 cut(s)	761
MvaI	CCWGG	3 cut(s)	425, 779, 1118
MvnI	CGCG	3 cut(s)	38, 207, 209
MwoI	GCNNNNNNNGC	4 cut(s)	1079, 1088, 1352, 1707
NciI	CCSGG	1 cut(s)	1553
NdeI	CATATG	3 cut(s)	347, 511, 528
NdeII	GATC	6 cut(s)	168, 1379, 1516, 1669, 1722, 1812
NlaIV	GGNNCC	5 cut(s)	100, 575, 957, 1033, 1431
NmuCI	GTSAC	3 cut(s)	469, 1816, 1916
NsbI	TGCGCA	2 cut(s)	675, 1020
NspI	RCATGY	6 cut(s)	395, 776, 810, 1047, 1755, 1795
NspV	TTCGAA	1 cut(s)	1246
PacI	TTAATTAA	1 cut(s)	1779
PaeI	GCATGC	2 cut(s)	395, 1795
PaeR7I	CTCGAG	1 cut(s)	198
PagI	TCATGA	1 cut(s)	943
PauI	GCGCGC	1 cut(s)	207
PciI	ACATGT	3 cut(s)	772, 1043, 1751
PctI	GAATGC	1 cut(s)	761
PdmI	GAANNNNTTC	1 cut(s)	1259
PfeI	GAWTC	8 cut(s)	40, 163, 458, 716, 940, 969, 978, 1490
Pfl23II	CGTACG	1 cut(s)	1887
PfoI	TCCNGGA	1 cut(s)	777
PkrI	GCNGC	9 cut(s)	20, 37, 95, 98, 136, 705, 1231, 1357, 1404
PleI	GAGTC	4 cut(s)	130, 568, 1018, 1171
PpsI	GAGTC	4 cut(s)	130, 568, 1018, 1171
Ppu21I	YACGTR	1 cut(s)	1601
PpuMI	RGGWCCY	1 cut(s)	421
PscI	ACATGT	3 cut(s)	772, 1043, 1751
PshBI	ATTAAT	1 cut(s)	1860
Psp124BI	GAGCTC	1 cut(s)	1926
Psp1406I	AACGTT	2 cut(s)	317, 825
Psp5II	RGGWCCY	1 cut(s)	421
Psp6I	CCWGG	3 cut(s)	423, 777, 1116
PspGI	CCWGG	3 cut(s)	423, 777, 1116
PspLI	CGTACG	1 cut(s)	1887
PspN4I	GGNNCC	5 cut(s)	100, 575, 957, 1033, 1431
PspPI	GGNCC	2 cut(s)	421, 1430
PspPPI	RGGWCCY	1 cut(s)	421
PspXI	VCTCGAGB	1 cut(s)	198
PstNI	CAGNNNCTG	2 cut(s)	284, 1193
PsuI	RGATCY	1 cut(s)	1669
PteI	GCGCGC	1 cut(s)	207
RsaI	GTAC	2 cut(s)	1688, 1889
RsaNI	GTAC	2 cut(s)	1687, 1888
RseI	CAYNNNNRTG	1 cut(s)	1068
SacI	GAGCTC	1 cut(s)	1926
SaqAI	TTAA	6 cut(s)	1374, 1389, 1476, 1775, 1779, 1860
SatI	GCNGC	9 cut(s)	19, 36, 94, 97, 135, 704, 1230, 1356, 1403
Sau3AI	GATC	6 cut(s)	168, 1379, 1516, 1669, 1722, 1812
Sau96I	GGNCC	2 cut(s)	421, 1430
SchI	GAGTC	4 cut(s)	131, 569, 1018, 1171
ScrFI	CCNGG	4 cut(s)	425, 779, 1118, 1553
SduI	GDGCHC	6 cut(s)	278, 432, 750, 1173, 1472, 1926
SfaNI	GCATC	4 cut(s)	558, 1091, 1352, 1735
SfcI	CTRYAG	2 cut(s)	1096, 1957
Sfr274I	CTCGAG	1 cut(s)	198
SfuI	TTCGAA	1 cut(s)	1246
SinI	GGWCC	2 cut(s)	421, 1430
SlaI	CTCGAG	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	1068
SmlI	CTYRAG	2 cut(s)	198, 1465
SmoI	CTYRAG	2 cut(s)	198, 1465
SphI	GCATGC	2 cut(s)	395, 1795
SsiI	CCGC	6 cut(s)	36, 96, 571, 1166, 1402, 1648
SspI	AATATT	2 cut(s)	368, 1609
SstI	GAGCTC	1 cut(s)	1926
StyD4I	CCNGG	4 cut(s)	423, 777, 1116, 1551
StyI	CCWWGG	2 cut(s)	577, 1424
TaaI	ACNGT	6 cut(s)	484, 1326, 1686, 1773, 1822, 1958
TaiI	ACGT	5 cut(s)	320, 828, 1603, 1660, 1889
TaqI	TCGA	6 cut(s)	81, 141, 199, 1246, 1274, 1420
TauI	GCSGC	3 cut(s)	38, 99, 1405
TfiI	GAWTC	8 cut(s)	40, 163, 458, 716, 940, 969, 978, 1490
Tru1I	TTAA	6 cut(s)	1374, 1389, 1476, 1775, 1779, 1860
Tru9I	TTAA	6 cut(s)	1374, 1389, 1476, 1775, 1779, 1860
TscAI	CASTG	5 cut(s)	412, 663, 855, 880, 1118
TseFI	GTSAC	3 cut(s)	469, 1816, 1916
TseI	GCWGC	6 cut(s)	18, 93, 134, 703, 1229, 1355
Tsp45I	GTSAC	3 cut(s)	469, 1816, 1916
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	5 cut(s)	412, 663, 855, 880, 1118
VneI	GTGCAC	2 cut(s)	746, 1169
VpaK11BI	GGWCC	2 cut(s)	421, 1430
VspI	ATTAAT	1 cut(s)	1860
XapI	RAATTY	4 cut(s)	7, 1384, 1497, 1964
XceI	RCATGY	6 cut(s)	395, 776, 810, 1047, 1755, 1795
XcmI	CCANNNNNNNNNTGG	1 cut(s)	758
XhoI	CTCGAG	1 cut(s)	198
XmiI	GTMKAC	1 cut(s)	304
XmnI	GAANNNNTTC	1 cut(s)	1259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.