Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003180

Physical Location & Seq

Genomic Coordinates Forward (+)

38334392 .. 38334736

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0270800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGCAGGCGTTTCAGGATGCCCTCTCGGATTGTAACCTGAAGGATATGGGTTCTACTGGAGGATTGTACACGTGGTCTGATTCGAACACGAAGGAGAGGCTCGACAGGGGCACCTGTACCCCAACCTGGTTATCGGAATTTGGTTTTTCACGTGTGGTTAATCTCCATCCTAGTAGGTCGGACCACGTACCCCTTCTCTTGGAGGTTCGTAAGGAACAAATGTGCCATGATAAAGTCCGACGTCAATTCCGGTTTGAAGAGATGTGGTGTGCTCATGGAGGCTTCTCGGCCAAGGTGGAGGAGGCTTGGAGTACTCCTTATGGTGGGGAACCCATGCTCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009893 GO:0010604 GO:0010638 GO:0019222 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0060255 GO:0065007 GO:0080090 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD PHD_2 PWWP SAND SET zf-HC5HC2H_2

Protein Analysis

114

Amino Acids

13.1

Weight (kDa)

5.92

Isoelectric Point (pI)

36.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61740 AT3G61740
fragaria_vesca	FvH4_1g22790 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370
malus_domestica	MD01G1080200.v1.1
prunus_persica	Prupe.2G187600_v2.0.a1
pyrus_communis	pycom01g10850
rosa_chinensis	RchiOBHm_Chr1g0359381 RchiOBHm_Chr2g0117111
rosa_laevigata	RLG00000018331 RLG00000027874
rosa_multiflora	Rmu_sc0005833.1_g000005 Rmu_ssc0000358.1_g000003
rosa_roxburghii	Rroxscaffold_2G00126700 Rroxscaffold_4G00297040
rosa_rugosa	Rorug01G0270700 Rorug01G0270800 Rorug02G0210600.1
rosa_samantha	Rh1AG284200 Rh1BG250300 Rh1CG268200 Rh1DG279200 Rh2AG266300 Rh2BG278700 Rh2DG273500 Rh2DG292600
rosa_wichuraiana	Rw1G025230 Rw2G021020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	244
AccB1I	GGYRCC	1 cut(s)	110
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	59
AcvI	CACGTG	2 cut(s)	72, 152
AcyI	GRCGYC	1 cut(s)	241
AfaI	GTAC	4 cut(s)	68, 118, 189, 313
AfiI	CCNNNNNNNGG	3 cut(s)	126, 199, 323
AflIII	ACRYGT	2 cut(s)	69, 151
AgsI	TTSAA	1 cut(s)	257
AjnI	CCWGG	1 cut(s)	125
AloI	GAACNNNNNNTCC	1 cut(s)	321
Alw21I	GWGCWC	1 cut(s)	274
AoxI	GGCC	1 cut(s)	288
ApoI	RAATTY	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	181
AsuII	TTCGAA	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	110
BbrPI	CACGTG	2 cut(s)	72, 152
Bbv12I	GWGCWC	1 cut(s)	274
BccI	CCATC	1 cut(s)	174
BciT130I	CCWGG	1 cut(s)	127
BfaI	CTAG	1 cut(s)	171
BmcAI	AGTACT	1 cut(s)	313
Bme1390I	CCNGG	1 cut(s)	127
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	2 cut(s)	112, 330
BmrFI	CCNGG	1 cut(s)	127
BmsI	GCATC	1 cut(s)	7
BpmI	CTGGAG	1 cut(s)	78
Bpu14I	TTCGAA	1 cut(s)	83
BsaAI	YACGTR	3 cut(s)	72, 152, 187
BsaHI	GRCGYC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	291
BsaWI	WCCGGW	1 cut(s)	249
BsaXI	ACNNNNNCTCC	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 199, 323
Bse1I	ACTGG	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	2 cut(s)	22, 166
BseLI	CCNNNNNNNGG	3 cut(s)	126, 199, 323
BseNI	ACTGG	1 cut(s)	61
BseRI	GAGGAG	1 cut(s)	314
BseSI	GKGCMC	1 cut(s)	113
BshFI	GGCC	1 cut(s)	290
BshNI	GGYRCC	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	274
BsiSI	CCGG	1 cut(s)	250
BslI	CCNNNNNNNGG	3 cut(s)	126, 199, 323
BsnI	GGCC	1 cut(s)	290
Bsp119I	TTCGAA	1 cut(s)	83
Bsp1286I	GDGCHC	2 cut(s)	113, 274
Bsp1407I	TGTACA	1 cut(s)	66
BspANI	GGCC	1 cut(s)	290
BspLI	GGNNCC	2 cut(s)	112, 330
BspT104I	TTCGAA	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	110
BsrGI	TGTACA	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	291
BssNI	GRCGYC	1 cut(s)	241
BssT1I	CCWWGG	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	252
BstACI	GRCGYC	1 cut(s)	241
BstAUI	TGTACA	1 cut(s)	66
BstBAI	YACGTR	3 cut(s)	72, 152, 187
BstBI	TTCGAA	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	22, 166
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	125
BstSLI	GKGCMC	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	290
BtsCI	GGATG	2 cut(s)	22, 166
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	181
CsiI	ACCWGGT	1 cut(s)	125
Csp6I	GTAC	4 cut(s)	67, 117, 188, 312
CviAII	CATG	3 cut(s)	227, 275, 334
CviJI	RGCY	4 cut(s)	100, 282, 290, 305
CviKI_1	RGCY	4 cut(s)	100, 282, 290, 305
CviQI	GTAC	4 cut(s)	67, 117, 188, 312
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	59
Eco72I	CACGTG	2 cut(s)	72, 152
EcoRII	CCWGG	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	3 cut(s)	230, 278, 337
FaiI	YATR	5 cut(s)	47, 228, 276, 321, 335
FatI	CATG	3 cut(s)	226, 274, 333
FokI	GGATG	2 cut(s)	29, 153
FspBI	CTAG	1 cut(s)	171
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	1 cut(s)	250
Hin1I	GRCGYC	1 cut(s)	241
Hin1II	CATG	3 cut(s)	230, 278, 337
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	1 cut(s)	250
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	5 cut(s)	28, 79, 136, 181, 239
Hpy188III	TCNNGA	1 cut(s)	14
Hpy8I	GTNNAC	1 cut(s)	69
Hpy99I	CGWCG	1 cut(s)	243
HpyAV	CCTTC	3 cut(s)	34, 85, 203
HpyCH4IV	ACGT	4 cut(s)	71, 151, 186, 241
HpyCH4V	TGCA	1 cut(s)	4
HpySE526I	ACGT	4 cut(s)	71, 151, 186, 241
Hsp92I	GRCGYC	1 cut(s)	241
Hsp92II	CATG	3 cut(s)	230, 278, 337
LmnI	GCTCC	1 cut(s)	342
LpnPI	CCDG	7 cut(s)	42, 50, 91, 112, 127, 139, 263
LweI	GCATC	1 cut(s)	7
MabI	ACCWGGT	1 cut(s)	125
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	4 cut(s)	71, 151, 186, 241
MaeIII	GTNAC	1 cut(s)	32
MboII	GAAGA	1 cut(s)	269
MhlI	GDGCHC	2 cut(s)	113, 274
MluCI	AATT	2 cut(s)	137, 245
MmeI	TCCRAC	2 cut(s)	159, 262
MnlI	CCTC	7 cut(s)	32, 53, 90, 196, 272, 292, 295
MseI	TTAA	2 cut(s)	159, 343
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	1 cut(s)	127
MvaI	CCWGG	1 cut(s)	127
NlaIII	CATG	3 cut(s)	230, 278, 337
NlaIV	GGNNCC	2 cut(s)	112, 330
NmeAIII	GCCGAG	1 cut(s)	266
NspV	TTCGAA	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	80
PmaCI	CACGTG	2 cut(s)	72, 152
PmlI	CACGTG	2 cut(s)	72, 152
Ppu21I	YACGTR	3 cut(s)	72, 152, 187
Psp6I	CCWGG	1 cut(s)	125
PspCI	CACGTG	2 cut(s)	72, 152
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	2 cut(s)	112, 330
PspPI	GGNCC	1 cut(s)	181
RsaI	GTAC	4 cut(s)	68, 118, 189, 313
RsaNI	GTAC	4 cut(s)	67, 117, 188, 312
SaqAI	TTAA	2 cut(s)	159, 343
Sau96I	GGNCC	1 cut(s)	181
ScaI	AGTACT	1 cut(s)	313
ScrFI	CCNGG	1 cut(s)	127
SduI	GDGCHC	2 cut(s)	113, 274
SexAI	ACCWGGT	1 cut(s)	125
SfaNI	GCATC	1 cut(s)	7
SfuI	TTCGAA	1 cut(s)	83
SinI	GGWCC	1 cut(s)	181
Sse9I	AATT	2 cut(s)	137, 245
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	125
StyI	CCWWGG	1 cut(s)	291
TaiI	ACGT	4 cut(s)	74, 154, 189, 244
TaqI	TCGA	2 cut(s)	83, 102
TasI	AATT	2 cut(s)	137, 245
TatI	WGTACW	2 cut(s)	66, 311
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	2 cut(s)	159, 343
Tru9I	TTAA	2 cut(s)	159, 343
VpaK11BI	GGWCC	1 cut(s)	181
XapI	RAATTY	1 cut(s)	137
XspI	CTAG	1 cut(s)	171
ZraI	GACGTC	1 cut(s)	242
ZrmI	AGTACT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.