Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003180

Physical Location & Seq

Genomic Coordinates Reverse (-)

30370077 .. 30372152

Gene Structure 2076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG273500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2076 bp

ATGCCAAATTTGAAACGCTGCAAGCTGAAAGAGGCCGCGAATCCGAAGAGGCGGAAAACGAATGGGGGGCATTACTCAGTTGAAGATTTCAGCAGCGGCTCCGGTTCTTCGGAATACAACGAGTCGTTTTCCGCTGCCGTCGAGGTCAACCGGCCAGCAATGAATGAGATCAGCTCTGAAAAGTTTCGGAGGTCAGCTCGAGGTCTCCGGCAAGTGCCGTCTTCAGTTGATTTATATGAAAAAAGGCAAGCTAAAGCTATGAAAACAGTGAAGGGCTCAGGTTCTGAAACTCAAGTTTACTTATGTAAACATTGTGCAAACTTGAAAAAATCAAAACAATGTTGTGGCATATGTAAGAAGATATCAGAGGGTGGAGATTGGGAGCATGCTGAGTGTGACAAAATTTCCAGTAATGTTTTCAAGGACCTGGAGCACATTGATTGCAAAAATAAGGAATGTGAATCGTCAGATGTGACCTGCGTAACTGTGGTTTGTAATGGCATGGAAGGAACATATGTGCCAAACCTTCATATGGTTGCTTGTAAGTGTGGACTGTGTGATGAGTCAAAGATGCGGAGCCTTGGTGAATGGGAAAGGCACACGGGTTGTAGAGCAAAGAAATGGAAGCATAGTGTGAAAGTGAAGGCCACAATGCTAAGACTGGAACAATGGATTGCAGAGTATAATGAACTTGGTTTAGATAAGCAGCAACTACTTGATTCCTTACAAGAAAAGTACGAGCCAGTTGAAGCAAAGTGGACAAGTGAAAGATGTGCAGTTTGTAGATGGGTTGAAGATTGGGAAGATAACAAAATGATCATATGCAACAGGTGTCAAATAGCTGTGCACCAAGAATGCTATGGTGCAAAACATGTCCAGGATTTTACTTCATGGGTTTGTAGGGCATGTGAAACACCTGATATCGTTAGAGAGTGTTGTCTCTGTCCAGTGAAAGGAGGTGCTTTGAAGCCCACTGATGTTGACACCTTGTGGGTTCATGTCTCTTGTGCTTGGTTTCATCCCGAAATAGGTTTCTTGAATCATGAGAAGATGGAACCTGCTGTTGGAATCCTTAGAATCCCACCCACTACTTTTCTGAAGCGTTGTGTAATTTGTGCGCAGACTCATGGTTCCTGCACCACATGTTGCAAATGCGCCACTCATTTTCATGCAACCTGTGCATCAAGAGCAGGCTACAGCATGGAGTTGCACTGCCAGGTGGGGAAGAATGGGAAACAAGTAACAACCAAGTTGATATATTGTGCGGTGCACAGGGCTCCCAATCCAGAAGCTGTTATCGTTGTTCATACTCCTTCAGGGGTTTTTGCTGCCAGAAGCTTGCTTCGAAACGAGAAAGGGTTCTTCAGGGGTTCGAGGGTGGTGTCATCAAAGAAAACTGAAGTTTCAGAACCTTCAACCTCAGAGTCTTATGAGTTAGAACCAGTACTCTCTGCTGCAAGATGCCGTGCTATTAAAAGATCAAATTTTAAGGGAGGTGAGCGGCTACCAATTTTTAATCGACCAAGGGGACCAACACACCATTCATTAGACGGAGTAAATAGCTTGAGCACATTTAAAGAAACAGAAGATTCTAAAATTTTTTCTTCCTTCAAGGATCGGCTTTACCACTTGCAGAAAACTGAAAATCACCGGGTTTGTTTTGGAAAATCTGGAATACATGGATGGGGTCTATTTGCACGTAGGAGTATTCAGGAAGGAGAAATGGTAGTTGAGTATCGTGGTGAGCGGGTAAGACGCAGCATTGCAGATCTGAGGGAAGCACGGTACAGGCTACAAGGCAAAGATTGCTATCTTTTCAAGATCAGCGAGGAAGTAGTAATTGATGCTACATGTAAAGGAAATATAGCACGGTTAATTAACCATTCGTGCATGCCTAATTGCTATTCAAGGATCGTGAGTGTGGGTGAGGAGAACCGAATAGTTCTCATTGCCAAGACTAATGTTTCGGCCGGTGAAGAACTAACGTACGATTACTTGTTTGAGCCGGATGAATGTGACGAGCTCAGAGTTCCCTGTCTATGTAAAGCTCCCAACTGTAGGAAATTCTTGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009893 GO:0010604 GO:0010638 GO:0019222 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0060255 GO:0065007 GO:0080090 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD PHD_2 PWWP SAND SET zf-HC5HC2H_2

Protein Analysis

691

Amino Acids

78.04

Weight (kDa)

8.67

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD_2	PF13831	270 - 304	2.7e-12	PHD-finger
zf-HC5HC2H_2	PF13832	311 - 424	1.4e-25	PHD-zinc-finger like domain
zf-HC5HC2H	PF13771	333 - 425	1.7e-10	PHD-like zinc-binding domain
SET	PF00856	561 - 665	6.7e-27	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61740 AT3G61740
fragaria_vesca	FvH4_1g22790 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370
malus_domestica	MD01G1080200.v1.1
prunus_persica	Prupe.2G187600_v2.0.a1
pyrus_communis	pycom01g10850
rosa_chinensis	RchiOBHm_Chr1g0359381 RchiOBHm_Chr2g0117111
rosa_laevigata	RLG00000018331 RLG00000027874
rosa_multiflora	Rmu_sc0005833.1_g000005 Rmu_ssc0000358.1_g000003
rosa_roxburghii	Rroxscaffold_2G00126700 Rroxscaffold_4G00297040
rosa_rugosa	Rorug01G0270700 Rorug01G0270800 Rorug02G0210600.1
rosa_samantha	Rh1AG284200 Rh1BG250300 Rh1CG268200 Rh1DG279200 Rh2AG266300 Rh2BG278700 Rh2DG273500 Rh2DG292600
rosa_wichuraiana	Rw1G025230 Rw2G021020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1119
Acc36I	ACCTGC	2 cut(s)	485, 1066
AccBSI	CCGCTC	2 cut(s)	1501, 1747
AccII	CGCG	1 cut(s)	38
AciI	CCGC	8 cut(s)	36, 52, 96, 132, 574, 1265, 1501, 1747
AclWI	GGATC	2 cut(s)	1623, 1919
AcoI	YGGCCR	2 cut(s)	152, 1968
AcsI	RAATTY	5 cut(s)	7, 402, 1483, 1596, 2063
AcuI	CTGAAG	5 cut(s)	207, 1118, 1299, 1348, 1419
AdeI	CACNNNGTG	1 cut(s)	990
AfaI	GTAC	4 cut(s)	737, 1446, 1787, 1988
AfiI	CCNNNNNNNGG	5 cut(s)	532, 953, 1028, 1064, 2058
AflIII	ACRYGT	3 cut(s)	871, 1142, 1850
AjnI	CCWGG	3 cut(s)	426, 876, 1215
AjuI	GAANNNNNNNTTGG	4 cut(s)	1047, 1079, 1525, 1557
Alw21I	GWGCWC	5 cut(s)	435, 849, 1272, 1571, 2025
Alw26I	GTCTC	3 cut(s)	209, 944, 1006
Alw44I	GTGCAC	2 cut(s)	845, 1268
AlwI	GGATC	2 cut(s)	1623, 1919
AlwNI	CAGNNNCTG	2 cut(s)	284, 1292
Ama87I	CYCGRG	1 cut(s)	198
AoxI	GGCC	4 cut(s)	33, 152, 645, 1968
ApaLI	GTGCAC	2 cut(s)	845, 1268
ApeKI	GCWGC	7 cut(s)	18, 93, 134, 706, 1328, 1454, 1758
ApoI	RAATTY	5 cut(s)	7, 402, 1483, 1596, 2063
ArsI	GACNNNNNNTTYG	2 cut(s)	1948, 1980
Asp700I	GAANNNNTTC	2 cut(s)	183, 1358
AspLEI	GCGC	2 cut(s)	1120, 1157
AspS9I	GGNCC	2 cut(s)	424, 1529
AsuC2I	CCSGG	1 cut(s)	1652
AsuHPI	GGTGA	6 cut(s)	596, 1508, 1640, 1754, 1937, 1985
AsuII	TTCGAA	1 cut(s)	1345
AvaI	CYCGRG	1 cut(s)	198
AvaII	GGWCC	2 cut(s)	424, 1529
BaeGI	GKGCMC	2 cut(s)	849, 1272
BanII	GRGCYC	3 cut(s)	278, 1279, 2025
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	5 cut(s)	435, 849, 1272, 1571, 2025
BbvI	GCAGC	7 cut(s)	5, 105, 121, 718, 1315, 1441, 1770
BccI	CCATC	3 cut(s)	780, 1045, 1677
BceAI	ACGGC	3 cut(s)	122, 202, 1449
BciT130I	CCWGG	3 cut(s)	428, 878, 1217
BclI	TGATCA	1 cut(s)	816
BcnI	CCSGG	1 cut(s)	1652
BcoDI	GTCTC	3 cut(s)	209, 944, 1006
BfmI	CTRYAG	2 cut(s)	1195, 2056
BfuAI	ACCTGC	2 cut(s)	485, 1066
BglII	AGATCT	1 cut(s)	1768
BmcAI	AGTACT	1 cut(s)	1446
Bme1390I	CCNGG	4 cut(s)	428, 878, 1217, 1652
Bme18I	GGWCC	2 cut(s)	424, 1529
BmeT110I	CYCGRG	1 cut(s)	198
BmgT120I	GGNCC	2 cut(s)	424, 1529
BmiI	GGNNCC	6 cut(s)	100, 578, 1056, 1132, 1278, 1530
BmrFI	CCNGG	4 cut(s)	428, 878, 1217, 1652
BmsI	GCATC	4 cut(s)	561, 1190, 1451, 1834
BpiI	GAAGAC	1 cut(s)	213
BplI	GAGNNNNNCTC	4 cut(s)	158, 190, 181, 213
BpmI	CTGGAG	1 cut(s)	449
Bpu10I	CCTNAGC	1 cut(s)	277
Bpu14I	TTCGAA	1 cut(s)	1345
BpuEI	CTTGAG	2 cut(s)	276, 1585
BpuMI	CCSGG	1 cut(s)	1652
BsaAI	YACGTR	1 cut(s)	1700
BsaBI	GATNNNNATC	1 cut(s)	1809
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	580, 1523
BsaWI	WCCGGW	1 cut(s)	101
BsaXI	ACNNNNNCTCC	4 cut(s)	568, 598, 1710, 1740
Bsc4I	CCNNNNNNNGG	5 cut(s)	532, 953, 1028, 1064, 2058
Bse118I	RCCGGY	2 cut(s)	150, 1970
Bse1I	ACTGG	5 cut(s)	408, 666, 743, 947, 1442
Bse3DI	GCAATG	3 cut(s)	165, 1761, 1947
Bse8I	GATNNNNATC	1 cut(s)	1809
BseBI	CCWGG	3 cut(s)	428, 878, 1217
BseDI	CCNNGG	2 cut(s)	580, 1523
BseGI	GGATG	3 cut(s)	1018, 1688, 2014
BseJI	GATNNNNATC	1 cut(s)	1809
BseLI	CCNNNNNNNGG	5 cut(s)	532, 953, 1028, 1064, 2058
BseMI	GCAATG	3 cut(s)	165, 1761, 1947
BseMII	CTCAG	6 cut(s)	90, 291, 381, 1434, 1763, 2038
BseNI	ACTGG	5 cut(s)	408, 666, 743, 947, 1442
BseRI	GAGGAG	1 cut(s)	1943
BseSI	GKGCMC	2 cut(s)	849, 1272
BseX3I	CGGCCG	1 cut(s)	1968
BseXI	GCAGC	7 cut(s)	5, 105, 121, 718, 1315, 1441, 1770
BsgI	GTGCAG	2 cut(s)	795, 1120
Bsh1236I	CGCG	1 cut(s)	38
Bsh1285I	CGRYCG	1 cut(s)	1971
BshFI	GGCC	4 cut(s)	35, 154, 647, 1970
BsiEI	CGRYCG	1 cut(s)	1971
BsiHKAI	GWGCWC	5 cut(s)	435, 849, 1272, 1571, 2025
BsiHKCI	CYCGRG	1 cut(s)	198
BsiSI	CCGG	6 cut(s)	102, 151, 208, 1651, 1971, 2006
BsiWI	CGTACG	1 cut(s)	1986
BslFI	GGGAC	1 cut(s)	1542
BslI	CCNNNNNNNGG	5 cut(s)	532, 953, 1028, 1064, 2058
BsmAI	GTCTC	3 cut(s)	209, 944, 1006
BsmFI	GGGAC	1 cut(s)	1542
BsmI	GAATGC	1 cut(s)	860
BsnI	GGCC	4 cut(s)	35, 154, 647, 1970
Bso31I	GGTCTC	1 cut(s)	209
BsoBI	CYCGRG	1 cut(s)	198
Bsp119I	TTCGAA	1 cut(s)	1345
Bsp1286I	GDGCHC	7 cut(s)	278, 435, 849, 1272, 1279, 1571, 2025
Bsp143I	GATC	7 cut(s)	168, 816, 1478, 1615, 1768, 1821, 1911
BspACI	CCGC	8 cut(s)	36, 52, 96, 132, 574, 1265, 1501, 1747
BspANI	GGCC	4 cut(s)	35, 154, 647, 1970
BspCNI	CTCAG	6 cut(s)	89, 290, 382, 1433, 1764, 2037
BspFNI	CGCG	1 cut(s)	38
BspHI	TCATGA	1 cut(s)	1042
BspLI	GGNNCC	6 cut(s)	100, 578, 1056, 1132, 1278, 1530
BspMI	ACCTGC	2 cut(s)	485, 1066
BspPI	GGATC	2 cut(s)	1623, 1919
BspT104I	TTCGAA	1 cut(s)	1345
BspTNI	GGTCTC	1 cut(s)	209
BsrBI	CCGCTC	2 cut(s)	1501, 1747
BsrDI	GCAATG	3 cut(s)	165, 1761, 1947
BsrFI	RCCGGY	2 cut(s)	150, 1970
BsrI	ACTGG	5 cut(s)	408, 666, 743, 947, 1442
BssAI	RCCGGY	2 cut(s)	150, 1970
BssECI	CCNNGG	2 cut(s)	580, 1523
BssMI	GATC	7 cut(s)	168, 816, 1478, 1615, 1768, 1821, 1911
BssT1I	CCWWGG	2 cut(s)	580, 1523
Bst2UI	CCWGG	3 cut(s)	428, 878, 1217
Bst4CI	ACNGT	6 cut(s)	268, 487, 555, 1785, 1872, 2057
Bst6I	CTCTTC	1 cut(s)	41
BstAPI	GCANNNNNTGC	2 cut(s)	1178, 1806
BstBAI	YACGTR	1 cut(s)	1700
BstBI	TTCGAA	1 cut(s)	1345
BstC8I	GCNNGC	7 cut(s)	23, 156, 249, 387, 1192, 1340, 1892
BstDEI	CTNAG	8 cut(s)	76, 277, 390, 656, 1073, 1420, 1772, 2024
BstF5I	GGATG	3 cut(s)	1018, 1688, 2014
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	2 cut(s)	1120, 1157
BstKTI	GATC	7 cut(s)	171, 819, 1481, 1618, 1771, 1824, 1914
BstMAI	GTCTC	3 cut(s)	209, 944, 1006
BstMBI	GATC	7 cut(s)	168, 816, 1478, 1615, 1768, 1821, 1911
BstMCI	CGRYCG	1 cut(s)	1971
BstMWI	GCNNNNNNNGC	3 cut(s)	1178, 1187, 1806
BstNI	CCWGG	3 cut(s)	428, 878, 1217
BstNSI	RCATGY	6 cut(s)	389, 875, 909, 1146, 1854, 1894
BstSCI	CCNGG	4 cut(s)	426, 876, 1215, 1650
BstSFI	CTRYAG	2 cut(s)	1195, 2056
BstSLI	GKGCMC	2 cut(s)	849, 1272
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	7 cut(s)	5, 105, 121, 718, 1315, 1441, 1770
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	1768
BstYI	RGATCY	1 cut(s)	1768
BstZI	CGGCCG	1 cut(s)	1968
BsuRI	GGCC	4 cut(s)	35, 154, 647, 1970
BtsCI	GGATG	3 cut(s)	1018, 1688, 2014
BtsI	GCAGTG	1 cut(s)	1210
BtsIMutI	CAGTG	4 cut(s)	273, 954, 972, 1210
BveI	ACCTGC	2 cut(s)	485, 1066
Cac8I	GCNNGC	7 cut(s)	23, 156, 249, 387, 1192, 1340, 1892
CaiI	CAGNNNCTG	2 cut(s)	284, 1292
CciI	TCATGA	1 cut(s)	1042
CfoI	GCGC	2 cut(s)	1120, 1157
Cfr10I	RCCGGY	2 cut(s)	150, 1970
Cfr13I	GGNCC	2 cut(s)	424, 1529
CseI	GACGC	1 cut(s)	1764
Csp6I	GTAC	4 cut(s)	736, 1445, 1786, 1987
CspCI	CAANNNNNGTGG	2 cut(s)	961, 996
CviQI	GTAC	4 cut(s)	736, 1445, 1786, 1987
DdeI	CTNAG	8 cut(s)	76, 277, 390, 656, 1073, 1420, 1772, 2024
DpnI	GATC	7 cut(s)	170, 818, 1480, 1617, 1770, 1823, 1913
DpnII	GATC	7 cut(s)	168, 816, 1478, 1615, 1768, 1821, 1911
DraI	TTTAAA	1 cut(s)	1576
DraIII	CACNNNGTG	1 cut(s)	990
EaeI	YGGCCR	2 cut(s)	152, 1968
EagI	CGGCCG	1 cut(s)	1968
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
EciI	GGCGGA	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	2023
EclXI	CGGCCG	1 cut(s)	1968
Eco130I	CCWWGG	2 cut(s)	580, 1523
Eco24I	GRGCYC	3 cut(s)	278, 1279, 2025
Eco31I	GGTCTC	1 cut(s)	209
Eco32I	GATATC	2 cut(s)	363, 922
Eco47I	GGWCC	2 cut(s)	424, 1529
Eco52I	CGGCCG	1 cut(s)	1968
Eco53kI	GAGCTC	1 cut(s)	2023
Eco57I	CTGAAG	5 cut(s)	207, 1118, 1299, 1348, 1419
Eco88I	CYCGRG	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	2023
EcoO109I	RGGNCCY	1 cut(s)	424
EcoRII	CCWGG	3 cut(s)	426, 876, 1215
EcoRV	GATATC	2 cut(s)	363, 922
EcoT14I	CCWWGG	2 cut(s)	580, 1523
EcoT38I	GRGCYC	3 cut(s)	278, 1279, 2025
ErhI	CCWWGG	2 cut(s)	580, 1523
FaqI	GGGAC	1 cut(s)	1542
FauI	CCCGC	1 cut(s)	1740
FauNDI	CATATG	4 cut(s)	350, 514, 531, 821
FbaI	TGATCA	1 cut(s)	816
FokI	GGATG	3 cut(s)	1005, 1695, 2021
FriOI	GRGCYC	3 cut(s)	278, 1279, 2025
FspI	TGCGCA	1 cut(s)	1119
GlaI	GCGC	2 cut(s)	1119, 1156
GsuI	CTGGAG	1 cut(s)	449
HaeIII	GGCC	4 cut(s)	35, 154, 647, 1970
HapII	CCGG	6 cut(s)	102, 151, 208, 1651, 1971, 2006
HgaI	GACGC	1 cut(s)	1764
HhaI	GCGC	2 cut(s)	1120, 1157
Hin6I	GCGC	2 cut(s)	1118, 1155
HinP1I	GCGC	2 cut(s)	1118, 1155
HincII	GTYRAC	2 cut(s)	148, 982
HindII	GTYRAC	2 cut(s)	148, 982
HindIII	AAGCTT	1 cut(s)	1336
HpaII	CCGG	6 cut(s)	102, 151, 208, 1651, 1971, 2006
HphI	GGTGA	6 cut(s)	596, 1508, 1640, 1754, 1937, 1985
Hpy166II	GTNNAC	8 cut(s)	148, 298, 308, 551, 759, 847, 982, 1270
Hpy188III	TCNNGA	9 cut(s)	1022, 1036, 1043, 1185, 1286, 1671, 1712, 1819, 1915
Hpy8I	GTNNAC	8 cut(s)	148, 298, 308, 551, 759, 847, 982, 1270
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	8 cut(s)	265, 500, 536, 637, 1323, 1422, 1618, 1709
HpyCH4III	ACNGT	6 cut(s)	268, 487, 555, 1785, 1872, 2057
HpyCH4IV	ACGT	2 cut(s)	1699, 1985
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1178, 1187, 1806
HpyF3I	CTNAG	8 cut(s)	76, 277, 390, 656, 1073, 1420, 1772, 2024
HpySE526I	ACGT	2 cut(s)	1699, 1985
HspAI	GCGC	2 cut(s)	1118, 1155
Ksp22I	TGATCA	1 cut(s)	816
Kzo9I	GATC	7 cut(s)	168, 816, 1478, 1615, 1768, 1821, 1911
LmnI	GCTCC	6 cut(s)	104, 382, 430, 576, 1282, 2053
Lsp1109I	GCAGC	7 cut(s)	5, 105, 121, 718, 1315, 1441, 1770
LweI	GCATC	4 cut(s)	561, 1190, 1451, 1834
MaeII	ACGT	2 cut(s)	1699, 1985
MaeIII	GTNAC	5 cut(s)	395, 472, 481, 1240, 2015
MalI	GATC	7 cut(s)	170, 818, 1480, 1617, 1770, 1823, 1913
MbiI	CCGCTC	2 cut(s)	1501, 1747
MboI	GATC	7 cut(s)	168, 816, 1478, 1615, 1768, 1821, 1911
MflI	RGATCY	1 cut(s)	1768
MhlI	GDGCHC	7 cut(s)	278, 435, 849, 1272, 1279, 1571, 2025
MlyI	GAGTC	4 cut(s)	131, 572, 1117, 1433
MmeI	TCCRAC	1 cut(s)	1045
MroXI	GAANNNNTTC	2 cut(s)	183, 1358
MseI	TTAA	6 cut(s)	1473, 1488, 1515, 1575, 1874, 1878
MslI	CAYNNNNRTG	1 cut(s)	1167
MspA1I	CMGCKG	2 cut(s)	96, 134
MspI	CCGG	6 cut(s)	102, 151, 208, 1651, 1971, 2006
MspR9I	CCNGG	4 cut(s)	428, 878, 1217, 1652
Mva1269I	GAATGC	1 cut(s)	860
MvaI	CCWGG	3 cut(s)	428, 878, 1217
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	3 cut(s)	1178, 1187, 1806
NciI	CCSGG	1 cut(s)	1652
NdeI	CATATG	4 cut(s)	350, 514, 531, 821
NdeII	GATC	7 cut(s)	168, 816, 1478, 1615, 1768, 1821, 1911
NlaIV	GGNNCC	6 cut(s)	100, 578, 1056, 1132, 1278, 1530
NmuCI	GTSAC	3 cut(s)	395, 472, 2015
NsbI	TGCGCA	1 cut(s)	1119
NspI	RCATGY	6 cut(s)	389, 875, 909, 1146, 1854, 1894
NspV	TTCGAA	1 cut(s)	1345
PacI	TTAATTAA	1 cut(s)	1878
PaeI	GCATGC	2 cut(s)	389, 1894
PaeR7I	CTCGAG	1 cut(s)	198
PagI	TCATGA	1 cut(s)	1042
PciI	ACATGT	3 cut(s)	871, 1142, 1850
PctI	GAATGC	1 cut(s)	860
PdmI	GAANNNNTTC	2 cut(s)	183, 1358
PfeI	GAWTC	7 cut(s)	40, 461, 719, 1039, 1068, 1077, 1589
Pfl23II	CGTACG	1 cut(s)	1986
PfoI	TCCNGGA	1 cut(s)	876
PleI	GAGTC	4 cut(s)	130, 571, 1117, 1432
PpsI	GAGTC	4 cut(s)	130, 571, 1117, 1432
Ppu21I	YACGTR	1 cut(s)	1700
PpuMI	RGGWCCY	1 cut(s)	424
PscI	ACATGT	3 cut(s)	871, 1142, 1850
Psp124BI	GAGCTC	1 cut(s)	2025
Psp5II	RGGWCCY	1 cut(s)	424
Psp6I	CCWGG	3 cut(s)	426, 876, 1215
PspGI	CCWGG	3 cut(s)	426, 876, 1215
PspLI	CGTACG	1 cut(s)	1986
PspN4I	GGNNCC	6 cut(s)	100, 578, 1056, 1132, 1278, 1530
PspPI	GGNCC	2 cut(s)	424, 1529
PspPPI	RGGWCCY	1 cut(s)	424
PspXI	VCTCGAGB	1 cut(s)	198
PstNI	CAGNNNCTG	2 cut(s)	284, 1292
PsuI	RGATCY	1 cut(s)	1768
RsaI	GTAC	4 cut(s)	737, 1446, 1787, 1988
RsaNI	GTAC	4 cut(s)	736, 1445, 1786, 1987
RseI	CAYNNNNRTG	1 cut(s)	1167
SacI	GAGCTC	1 cut(s)	2025
SaqAI	TTAA	6 cut(s)	1473, 1488, 1515, 1575, 1874, 1878
Sau3AI	GATC	7 cut(s)	168, 816, 1478, 1615, 1768, 1821, 1911
Sau96I	GGNCC	2 cut(s)	424, 1529
ScaI	AGTACT	1 cut(s)	1446
SchI	GAGTC	4 cut(s)	131, 572, 1117, 1433
ScrFI	CCNGG	4 cut(s)	428, 878, 1217, 1652
SduI	GDGCHC	7 cut(s)	278, 435, 849, 1272, 1279, 1571, 2025
SfaNI	GCATC	4 cut(s)	561, 1190, 1451, 1834
SfcI	CTRYAG	2 cut(s)	1195, 2056
Sfr274I	CTCGAG	1 cut(s)	198
SfuI	TTCGAA	1 cut(s)	1345
SinI	GGWCC	2 cut(s)	424, 1529
SlaI	CTCGAG	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	1167
SmlI	CTYRAG	3 cut(s)	198, 291, 1564
SmoI	CTYRAG	3 cut(s)	198, 291, 1564
SphI	GCATGC	2 cut(s)	389, 1894
SsiI	CCGC	8 cut(s)	36, 52, 96, 132, 574, 1265, 1501, 1747
SstI	GAGCTC	1 cut(s)	2025
StyD4I	CCNGG	4 cut(s)	426, 876, 1215, 1650
StyI	CCWWGG	2 cut(s)	580, 1523
TaaI	ACNGT	6 cut(s)	268, 487, 555, 1785, 1872, 2057
TaiI	ACGT	2 cut(s)	1702, 1988
TaqI	TCGA	5 cut(s)	141, 199, 1345, 1373, 1519
TatI	WGTACW	1 cut(s)	1444
TauI	GCSGC	3 cut(s)	38, 99, 1504
TfiI	GAWTC	7 cut(s)	40, 461, 719, 1039, 1068, 1077, 1589
Tru1I	TTAA	6 cut(s)	1473, 1488, 1515, 1575, 1874, 1878
Tru9I	TTAA	6 cut(s)	1473, 1488, 1515, 1575, 1874, 1878
TscAI	CASTG	4 cut(s)	273, 954, 979, 1217
TseFI	GTSAC	3 cut(s)	395, 472, 2015
TseI	GCWGC	7 cut(s)	18, 93, 134, 706, 1328, 1454, 1758
Tsp45I	GTSAC	3 cut(s)	395, 472, 2015
TspGWI	ACGGA	1 cut(s)	1566
TspRI	CASTG	4 cut(s)	273, 954, 979, 1217
VneI	GTGCAC	2 cut(s)	845, 1268
VpaK11BI	GGWCC	2 cut(s)	424, 1529
XapI	RAATTY	5 cut(s)	7, 402, 1483, 1596, 2063
XceI	RCATGY	6 cut(s)	389, 875, 909, 1146, 1854, 1894
XcmI	CCANNNNNNNNNTGG	1 cut(s)	857
XhoI	CTCGAG	1 cut(s)	198
XmnI	GAANNNNTTC	2 cut(s)	183, 1358
ZrmI	AGTACT	1 cut(s)	1446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.