Rh2AG266300
ERF Family

Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX MLL subfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
31062063 .. 31063529
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG266300.1

Sequence Viewer

Length: 1396 bp
ATGAATGAGATCAGCTCTGAAAAGTTTCGGAGGTCAGCTCGAGGTCTCCGGCAAGTGCCGTCTTCAGTTGATTTATATGAAAAAAGGCAAGCTAAAGCTATGAAAACAGTGAAGGGCTCAGGTTCTGAAACTCAAGTTTACTTATGTAAACATTGTGCAAACTTGAAAAAATCAAAACAATGTTGTGGCATATGTAAGAAGATATCAGAGGGTGGAGATTGGGAGCATGCTGAGTGTGACAAAATTTCCAGTAATGTTTTCAAGGACCTGGAGCACATTGATTGCAAAAATAAGGAATGTGAATCGTCAGATGTGACCTGCGTAACTGTGGTTTGTAATGGCATGGAAGGAACATATGTGCCAAACCTTCATATGGTTGCTTGTAAGTGTGGACTGTGTGATGAGTCAAAGATGCGGAGCCTTGGTGAATGGGAAAGGCACACGGGTTGTAGAGCAAAGAAATGGAAGCATAGTGTGAAAGTGAAGGCCACAATGCTAAGACTGGAACAATGGATTGCAGAGTATAATGAACTTGGTTTAGATAAGCAGCAACTACTTGATTCCTTACAAGAAAAGTACGAGCCAGTTGAAGCAAAGTGGACAAGTGAAAGATGTGCAGTTTGTAGATGGGTTGAAGATTGGGAAGATAACAAAATGATCATATGCAACAGGTGTCAAATAGCTGTGCACCAAGAATGCTATGGTGCAAAACATGTCCAGGATTTTACTTCATGGGTTTGTAGGGCATGTGAAACACCTGATATCGTTAGAGAGTGTTGTCTCTGTCCAGTGAAAGGAGGTGCTTTGAAGCCCACTGATGTTGACACCTTGTGGGTTCATGTCTCTTGTGCTTGGTTTCATCCCGAAATAGGTTTCTTGAATCATGAGAAGATGGAACCTGCTGTTGGAATCCTTAGAATCCCACCCACTACTTTTCTGAAGCGTTGTGTAATTTGTGCGCAGACTCATGGTTCCTGCACCACATGTTGCAAATGCGCCACTCATTTTCATGCAACCTGTGCATCAAGAGCAGGCTACAGCATGGAGTTGCACTGCCAGGTGGGGAAGAATGGGAAACAAGTAACAACCAAGTTGATATATTGTGCGGTGCACAGGGCTCCCAATCCAGAAGCTGTTATCGTTGTTCATACTCCTTCAGGGGTTTTTGCTGCCAGAAGCTTGCTTCGAAACGAGAAAGGGTTCTTCAGGGGTTCGAGGGTGGTGTCATCAAAGAAAACTGAAGTTTCAGAACCTTCAACCTCAGAGTCTTATGAGTTAGAACCAGTACTCTCTGCTGCAAGATGCCGTGCTATTAAAAGATCAAATTTTAAGGGAGGTGAGCGGCTACCAATTTTTAATCGACCAAGGGGACCAACACACCATTCATTAGACGGAG

Protein Analysis

465

Amino Acids

52.3

Weight (kDa)

8.66

Isoelectric Point (pI)

43.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_2 PF13831 217 - 251 1.7e-12 PHD-finger
zf-HC5HC2H_2 PF13832 258 - 371 7.1e-26 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 280 - 372 9.2e-11 PHD-like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 960
Acc36I ACCTGC 2 cut(s) 326, 907
AccBSI CCGCTC 1 cut(s) 1342
AciI CCGC 3 cut(s) 415, 1106, 1342
AcsI RAATTY 2 cut(s) 243, 1324
AcuI CTGAAG 5 cut(s) 48, 959, 1140, 1189, 1260
AdeI CACNNNGTG 1 cut(s) 831
AfaI GTAC 2 cut(s) 578, 1287
AfiI CCNNNNNNNGG 4 cut(s) 373, 794, 869, 905
AflIII ACRYGT 2 cut(s) 712, 983
AgsI TTSAA 7 cut(s) 166, 262, 590, 635, 808, 880, 1257
AjnI CCWGG 3 cut(s) 267, 717, 1056
AjuI GAANNNNNNNTTGG 3 cut(s) 888, 920, 1366
AluBI AGCT 7 cut(s) 15, 38, 92, 98, 683, 1133, 1179
AluI AGCT 7 cut(s) 15, 38, 92, 98, 683, 1133, 1179
Alw21I GWGCWC 3 cut(s) 276, 690, 1113
Alw26I GTCTC 3 cut(s) 50, 785, 847
Alw44I GTGCAC 2 cut(s) 686, 1109
AlwNI CAGNNNCTG 2 cut(s) 125, 1133
Ama87I CYCGRG 1 cut(s) 39
AoxI GGCC 1 cut(s) 486
ApaLI GTGCAC 2 cut(s) 686, 1109
ApeKI GCWGC 3 cut(s) 547, 1169, 1295
ApoI RAATTY 2 cut(s) 243, 1324
Asp700I GAANNNNTTC 2 cut(s) 24, 1199
AspLEI GCGC 2 cut(s) 961, 998
AspS9I GGNCC 2 cut(s) 265, 1370
AsuHPI GGTGA 2 cut(s) 437, 1349
AsuII TTCGAA 1 cut(s) 1186
AvaI CYCGRG 1 cut(s) 39
AvaII GGWCC 2 cut(s) 265, 1370
BaeGI GKGCMC 2 cut(s) 690, 1113
BanII GRGCYC 2 cut(s) 119, 1120
BbsI GAAGAC 1 cut(s) 54
Bbv12I GWGCWC 3 cut(s) 276, 690, 1113
BbvI GCAGC 3 cut(s) 559, 1156, 1282
BccI CCATC 2 cut(s) 621, 886
BceAI ACGGC 2 cut(s) 43, 1290
BciT130I CCWGG 3 cut(s) 269, 719, 1058
BclI TGATCA 1 cut(s) 657
BcoDI GTCTC 3 cut(s) 50, 785, 847
BfmI CTRYAG 1 cut(s) 1036
BfuAI ACCTGC 2 cut(s) 326, 907
BisI GCNGC 4 cut(s) 548, 1170, 1296, 1343
BlsI GCNGC 4 cut(s) 549, 1171, 1297, 1344
BmcAI AGTACT 1 cut(s) 1287
Bme1390I CCNGG 3 cut(s) 269, 719, 1058
Bme18I GGWCC 2 cut(s) 265, 1370
BmeT110I CYCGRG 1 cut(s) 39
BmgT120I GGNCC 2 cut(s) 265, 1370
BmiI GGNNCC 5 cut(s) 419, 897, 973, 1119, 1371
BmrFI CCNGG 3 cut(s) 269, 719, 1058
BmsI GCATC 3 cut(s) 402, 1031, 1292
BpiI GAAGAC 1 cut(s) 54
BplI GAGNNNNNCTC 3 cut(s) 31, 22, 54
BpmI CTGGAG 1 cut(s) 290
Bpu10I CCTNAGC 1 cut(s) 118
Bpu14I TTCGAA 1 cut(s) 1186
BpuEI CTTGAG 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 421, 1364
BsaXI ACNNNNNCTCC 2 cut(s) 409, 439
Bsc4I CCNNNNNNNGG 4 cut(s) 373, 794, 869, 905
Bse1I ACTGG 5 cut(s) 249, 507, 584, 788, 1283
BseBI CCWGG 3 cut(s) 269, 719, 1058
BseDI CCNNGG 2 cut(s) 421, 1364
BseGI GGATG 1 cut(s) 859
BseLI CCNNNNNNNGG 4 cut(s) 373, 794, 869, 905
BseMII CTCAG 3 cut(s) 132, 222, 1275
BseNI ACTGG 5 cut(s) 249, 507, 584, 788, 1283
BseSI GKGCMC 2 cut(s) 690, 1113
BseXI GCAGC 3 cut(s) 559, 1156, 1282
BsgI GTGCAG 2 cut(s) 636, 961
BshFI GGCC 1 cut(s) 488
BsiHKAI GWGCWC 3 cut(s) 276, 690, 1113
BsiHKCI CYCGRG 1 cut(s) 39
BsiSI CCGG 1 cut(s) 49
BslFI GGGAC 1 cut(s) 1383
BslI CCNNNNNNNGG 4 cut(s) 373, 794, 869, 905
BsmAI GTCTC 3 cut(s) 50, 785, 847
BsmFI GGGAC 1 cut(s) 1383
BsmI GAATGC 1 cut(s) 701
BsnI GGCC 1 cut(s) 488
Bso31I GGTCTC 1 cut(s) 50
BsoBI CYCGRG 1 cut(s) 39
Bsp119I TTCGAA 1 cut(s) 1186
Bsp1286I GDGCHC 5 cut(s) 119, 276, 690, 1113, 1120
Bsp143I GATC 3 cut(s) 9, 657, 1319
BspACI CCGC 3 cut(s) 415, 1106, 1342
BspANI GGCC 1 cut(s) 488
BspCNI CTCAG 3 cut(s) 131, 223, 1274
BspHI TCATGA 1 cut(s) 883
BspLI GGNNCC 5 cut(s) 419, 897, 973, 1119, 1371
BspMI ACCTGC 2 cut(s) 326, 907
BspT104I TTCGAA 1 cut(s) 1186
BspTNI GGTCTC 1 cut(s) 50
BsrBI CCGCTC 1 cut(s) 1342
BsrI ACTGG 5 cut(s) 249, 507, 584, 788, 1283
BssECI CCNNGG 2 cut(s) 421, 1364
BssMI GATC 3 cut(s) 9, 657, 1319
BssT1I CCWWGG 2 cut(s) 421, 1364
Bst2UI CCWGG 3 cut(s) 269, 719, 1058
Bst4CI ACNGT 3 cut(s) 109, 328, 396
BstAPI GCANNNNNTGC 1 cut(s) 1019
BstBI TTCGAA 1 cut(s) 1186
BstC8I GCNNGC 4 cut(s) 90, 228, 1033, 1181
BstDEI CTNAG 5 cut(s) 118, 231, 497, 914, 1261
BstF5I GGATG 1 cut(s) 859
BstHHI GCGC 2 cut(s) 961, 998
BstKTI GATC 3 cut(s) 12, 660, 1322
BstMAI GTCTC 3 cut(s) 50, 785, 847
BstMBI GATC 3 cut(s) 9, 657, 1319
BstMWI GCNNNNNNNGC 2 cut(s) 1019, 1028
BstNI CCWGG 3 cut(s) 269, 719, 1058
BstNSI RCATGY 4 cut(s) 230, 716, 750, 987
BstSCI CCNGG 3 cut(s) 267, 717, 1056
BstSFI CTRYAG 1 cut(s) 1036
BstSLI GKGCMC 2 cut(s) 690, 1113
BstV1I GCAGC 3 cut(s) 559, 1156, 1282
BstV2I GAAGAC 1 cut(s) 54
BsuRI GGCC 1 cut(s) 488
BtsCI GGATG 1 cut(s) 859
BtsI GCAGTG 1 cut(s) 1051
BtsIMutI CAGTG 4 cut(s) 114, 795, 813, 1051
BveI ACCTGC 2 cut(s) 326, 907
Cac8I GCNNGC 4 cut(s) 90, 228, 1033, 1181
CaiI CAGNNNCTG 2 cut(s) 125, 1133
CciI TCATGA 1 cut(s) 883
CfoI GCGC 2 cut(s) 961, 998
Cfr13I GGNCC 2 cut(s) 265, 1370
Csp6I GTAC 2 cut(s) 577, 1286
CspCI CAANNNNNGTGG 2 cut(s) 802, 837
CviQI GTAC 2 cut(s) 577, 1286
DdeI CTNAG 5 cut(s) 118, 231, 497, 914, 1261
DpnI GATC 3 cut(s) 11, 659, 1321
DpnII GATC 3 cut(s) 9, 657, 1319
DraIII CACNNNGTG 1 cut(s) 831
Eco130I CCWWGG 2 cut(s) 421, 1364
Eco24I GRGCYC 2 cut(s) 119, 1120
Eco31I GGTCTC 1 cut(s) 50
Eco32I GATATC 2 cut(s) 204, 763
Eco47I GGWCC 2 cut(s) 265, 1370
Eco57I CTGAAG 5 cut(s) 48, 959, 1140, 1189, 1260
Eco88I CYCGRG 1 cut(s) 39
EcoO109I RGGNCCY 1 cut(s) 265
EcoRII CCWGG 3 cut(s) 267, 717, 1056
EcoRV GATATC 2 cut(s) 204, 763
EcoT14I CCWWGG 2 cut(s) 421, 1364
EcoT38I GRGCYC 2 cut(s) 119, 1120
ErhI CCWWGG 2 cut(s) 421, 1364
FaqI GGGAC 1 cut(s) 1383
FauNDI CATATG 4 cut(s) 191, 355, 372, 662
FbaI TGATCA 1 cut(s) 657
Fnu4HI GCNGC 4 cut(s) 548, 1170, 1296, 1343
FokI GGATG 1 cut(s) 846
FriOI GRGCYC 2 cut(s) 119, 1120
Fsp4HI GCNGC 4 cut(s) 548, 1170, 1296, 1343
FspI TGCGCA 1 cut(s) 960
GlaI GCGC 2 cut(s) 960, 997
GluI GCNGC 4 cut(s) 548, 1170, 1296, 1343
GsuI CTGGAG 1 cut(s) 290
HaeIII GGCC 1 cut(s) 488
HapII CCGG 1 cut(s) 49
HhaI GCGC 2 cut(s) 961, 998
Hin6I GCGC 2 cut(s) 959, 996
HinP1I GCGC 2 cut(s) 959, 996
HincII GTYRAC 1 cut(s) 823
HindII GTYRAC 1 cut(s) 823
HindIII AAGCTT 1 cut(s) 1177
HinfI GANTC 8 cut(s) 302, 404, 560, 880, 909, 918, 964, 1265
HpaII CCGG 1 cut(s) 49
HphI GGTGA 2 cut(s) 437, 1349
Hpy166II GTNNAC 7 cut(s) 139, 149, 392, 600, 688, 823, 1111
Hpy188I TCNGA 8 cut(s) 19, 30, 127, 208, 310, 939, 1249, 1264
Hpy188III TCNNGA 5 cut(s) 863, 877, 884, 1026, 1127
Hpy8I GTNNAC 7 cut(s) 139, 149, 392, 600, 688, 823, 1111
HpyAV CCTTC 6 cut(s) 106, 341, 377, 478, 1164, 1263
HpyCH4III ACNGT 3 cut(s) 109, 328, 396
HpyF10VI GCNNNNNNNGC 2 cut(s) 1019, 1028
HpyF3I CTNAG 5 cut(s) 118, 231, 497, 914, 1261
HspAI GCGC 2 cut(s) 959, 996
Ksp22I TGATCA 1 cut(s) 657
Kzo9I GATC 3 cut(s) 9, 657, 1319
LmnI GCTCC 4 cut(s) 223, 271, 417, 1123
Lsp1109I GCAGC 3 cut(s) 559, 1156, 1282
LweI GCATC 3 cut(s) 402, 1031, 1292
MaeIII GTNAC 4 cut(s) 236, 313, 322, 1081
MalI GATC 3 cut(s) 11, 659, 1321
MbiI CCGCTC 1 cut(s) 1342
MboI GATC 3 cut(s) 9, 657, 1319
MboII GAAGA 7 cut(s) 54, 211, 647, 656, 901, 1078, 1195
MhlI GDGCHC 5 cut(s) 119, 276, 690, 1113, 1120
MluCI AATT 4 cut(s) 243, 951, 1324, 1350
MlyI GAGTC 3 cut(s) 413, 958, 1274
MmeI TCCRAC 1 cut(s) 886
MnlI CCTC 7 cut(s) 24, 35, 202, 791, 1209, 1270, 1328
MroXI GAANNNNTTC 2 cut(s) 24, 1199
MseI TTAA 3 cut(s) 1314, 1329, 1356
MslI CAYNNNNRTG 1 cut(s) 1008
MspI CCGG 1 cut(s) 49
MspR9I CCNGG 3 cut(s) 269, 719, 1058
Mva1269I GAATGC 1 cut(s) 701
MvaI CCWGG 3 cut(s) 269, 719, 1058
MwoI GCNNNNNNNGC 2 cut(s) 1019, 1028
NdeI CATATG 4 cut(s) 191, 355, 372, 662
NdeII GATC 3 cut(s) 9, 657, 1319
NlaIV GGNNCC 5 cut(s) 419, 897, 973, 1119, 1371
NmuCI GTSAC 2 cut(s) 236, 313
NsbI TGCGCA 1 cut(s) 960
NspI RCATGY 4 cut(s) 230, 716, 750, 987
NspV TTCGAA 1 cut(s) 1186
PaeI GCATGC 1 cut(s) 230
PaeR7I CTCGAG 1 cut(s) 39
PagI TCATGA 1 cut(s) 883
PciI ACATGT 2 cut(s) 712, 983
PctI GAATGC 1 cut(s) 701
PdmI GAANNNNTTC 2 cut(s) 24, 1199
PfeI GAWTC 5 cut(s) 302, 560, 880, 909, 918
PfoI TCCNGGA 1 cut(s) 717
PkrI GCNGC 4 cut(s) 549, 1171, 1297, 1344
PleI GAGTC 3 cut(s) 412, 958, 1273
PpsI GAGTC 3 cut(s) 412, 958, 1273
PpuMI RGGWCCY 1 cut(s) 265
PscI ACATGT 2 cut(s) 712, 983
Psp5II RGGWCCY 1 cut(s) 265
Psp6I CCWGG 3 cut(s) 267, 717, 1056
PspGI CCWGG 3 cut(s) 267, 717, 1056
PspN4I GGNNCC 5 cut(s) 419, 897, 973, 1119, 1371
PspPI GGNCC 2 cut(s) 265, 1370
PspPPI RGGWCCY 1 cut(s) 265
PspXI VCTCGAGB 1 cut(s) 39
PstNI CAGNNNCTG 2 cut(s) 125, 1133
RsaI GTAC 2 cut(s) 578, 1287
RsaNI GTAC 2 cut(s) 577, 1286
RseI CAYNNNNRTG 1 cut(s) 1008
SaqAI TTAA 3 cut(s) 1314, 1329, 1356
SatI GCNGC 4 cut(s) 548, 1170, 1296, 1343
Sau3AI GATC 3 cut(s) 9, 657, 1319
Sau96I GGNCC 2 cut(s) 265, 1370
ScaI AGTACT 1 cut(s) 1287
SchI GAGTC 3 cut(s) 413, 958, 1274
ScrFI CCNGG 3 cut(s) 269, 719, 1058
SduI GDGCHC 5 cut(s) 119, 276, 690, 1113, 1120
SfaNI GCATC 3 cut(s) 402, 1031, 1292
SfcI CTRYAG 1 cut(s) 1036
Sfr274I CTCGAG 1 cut(s) 39
SfuI TTCGAA 1 cut(s) 1186
SinI GGWCC 2 cut(s) 265, 1370
SlaI CTCGAG 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 1008
SmlI CTYRAG 2 cut(s) 39, 132
SmoI CTYRAG 2 cut(s) 39, 132
SphI GCATGC 1 cut(s) 230
Sse9I AATT 4 cut(s) 243, 951, 1324, 1350
SsiI CCGC 3 cut(s) 415, 1106, 1342
StyD4I CCNGG 3 cut(s) 267, 717, 1056
StyI CCWWGG 2 cut(s) 421, 1364
TaaI ACNGT 3 cut(s) 109, 328, 396
TaqI TCGA 4 cut(s) 40, 1186, 1214, 1360
TasI AATT 4 cut(s) 243, 951, 1324, 1350
TatI WGTACW 1 cut(s) 1285
TauI GCSGC 1 cut(s) 1345
TfiI GAWTC 5 cut(s) 302, 560, 880, 909, 918
Tru1I TTAA 3 cut(s) 1314, 1329, 1356
Tru9I TTAA 3 cut(s) 1314, 1329, 1356
TscAI CASTG 4 cut(s) 114, 795, 820, 1058
TseFI GTSAC 2 cut(s) 236, 313
TseI GCWGC 3 cut(s) 547, 1169, 1295
Tsp45I GTSAC 2 cut(s) 236, 313
TspRI CASTG 4 cut(s) 114, 795, 820, 1058
VneI GTGCAC 2 cut(s) 686, 1109
VpaK11BI GGWCC 2 cut(s) 265, 1370
XapI RAATTY 2 cut(s) 243, 1324
XceI RCATGY 4 cut(s) 230, 716, 750, 987
XcmI CCANNNNNNNNNTGG 1 cut(s) 698
XhoI CTCGAG 1 cut(s) 39
XmnI GAANNNNTTC 2 cut(s) 24, 1199
ZrmI AGTACT 1 cut(s) 1287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.