Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003180

Physical Location & Seq

Genomic Coordinates Reverse (-)

38325535 .. 38326430

Gene Structure 896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0270700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGATTAAAAACTATTTTTCTCGGGGCCGGGTCTTCGTTAGCCCGGCTAGGTCTTCGTTCACTTTGCCCGAAGCATGCTTCACTGCAAGATTGACTCTCAGGGTCATTGTCGGCCCAAGTCTTCGTCGACTTAGGCCACAGTACAGAACACTTGAAAACGACCACAAATCTCATGGAGGAGTTTGCCAATTCCACCTTACAAAAGCCACCATAACCATTAGGAATTTTTCACTTAACCTCAGCCAAAATGAAAACTTTGCTACATTTCTTCCTTTTCTTAATCACACTCTGGTCCTTCCACCAAGATTGTTTCTTGAAATGCAAGTACTGATTGTTGTTCTTGGGTCGGCGTCACTTGCAGCCGTAATGGGCGTCCTCAATCTGGCGGACAACCTACTTGGTGGCAGTGATGCTGATCAATCAATTCCATCCGCCATCGGAAATCTCCTGAACTTGAGGTATCTGAATTTATCTCTTAATGATTATTCTGGGGACATTCCCATCGAGATTTCTCGCTTGAGGAGGTTGAACTTAGAGAGTTATATCTTAATGGTGTCCAAATATCAGAACAGCGGAGTTAGTGGTGCCGAGCCATATCATCTTCCATTCCTAACCTCAGGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009893 GO:0010604 GO:0010638 GO:0019222 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0060255 GO:0065007 GO:0080090 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD PHD_2 PWWP SAND SET zf-HC5HC2H_2

Protein Analysis

208

Amino Acids

23.1

Weight (kDa)

9.63

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61740 AT3G61740
fragaria_vesca	FvH4_1g22790 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370 FvH4_7g16370
malus_domestica	MD01G1080200.v1.1
prunus_persica	Prupe.2G187600_v2.0.a1
pyrus_communis	pycom01g10850
rosa_chinensis	RchiOBHm_Chr1g0359381 RchiOBHm_Chr2g0117111
rosa_laevigata	RLG00000018331 RLG00000027874
rosa_multiflora	Rmu_sc0005833.1_g000005 Rmu_ssc0000358.1_g000003
rosa_roxburghii	Rroxscaffold_2G00126700 Rroxscaffold_4G00297040
rosa_rugosa	Rorug01G0270700 Rorug01G0270800 Rorug02G0210600.1
rosa_samantha	Rh1AG284200 Rh1BG250300 Rh1CG268200 Rh1DG279200 Rh2AG266300 Rh2BG278700 Rh2DG273500 Rh2DG292600
rosa_wichuraiana	Rw1G025230 Rw2G021020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	584
AccI	GTMKAC	1 cut(s)	127
AciI	CCGC	3 cut(s)	386, 432, 573
AcsI	RAATTY	2 cut(s)	223, 466
AcyI	GRCGYC	2 cut(s)	350, 372
AfaI	GTAC	2 cut(s)	143, 327
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	3 cut(s)	155, 317, 529
Ama87I	CYCGRG	1 cut(s)	21
AoxI	GGCC	3 cut(s)	25, 112, 134
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	2 cut(s)	223, 466
AspS9I	GGNCC	3 cut(s)	25, 113, 292
AsuC2I	CCSGG	2 cut(s)	29, 44
AvaI	CYCGRG	1 cut(s)	21
AvaII	GGWCC	1 cut(s)	292
AxyI	CCTNAGG	1 cut(s)	616
BanI	GGYRCC	1 cut(s)	584
BbsI	GAAGAC	3 cut(s)	25, 45, 113
BbvCI	CCTCAGC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	371
BccI	CCATC	3 cut(s)	436, 443, 509
BceAI	ACGGC	1 cut(s)	347
BclI	TGATCA	1 cut(s)	415
BcnI	CCSGG	2 cut(s)	29, 44
BfaI	CTAG	1 cut(s)	48
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
BmcAI	AGTACT	1 cut(s)	327
Bme1390I	CCNGG	2 cut(s)	29, 44
Bme18I	GGWCC	1 cut(s)	292
BmeT110I	CYCGRG	1 cut(s)	21
BmgT120I	GGNCC	3 cut(s)	25, 113, 292
BmiI	GGNNCC	2 cut(s)	26, 586
BmrFI	CCNGG	2 cut(s)	29, 44
BmsI	GCATC	1 cut(s)	400
BpiI	GAAGAC	3 cut(s)	25, 45, 113
Bpu10I	CCTNAGC	1 cut(s)	239
BpuEI	CTTGAG	2 cut(s)	475, 538
BpuMI	CCSGG	2 cut(s)	29, 44
BsaBI	GATNNNNATC	1 cut(s)	414
BsaHI	GRCGYC	2 cut(s)	350, 372
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse21I	CCTNAGG	1 cut(s)	616
Bse8I	GATNNNNATC	1 cut(s)	414
BseGI	GGATG	1 cut(s)	428
BseJI	GATNNNNATC	1 cut(s)	414
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMII	CTCAG	2 cut(s)	112, 253
BseRI	GAGGAG	2 cut(s)	192, 535
BseXI	GCAGC	1 cut(s)	371
BshFI	GGCC	3 cut(s)	27, 114, 136
BshNI	GGYRCC	1 cut(s)	584
BsiHKCI	CYCGRG	1 cut(s)	21
BsiSI	CCGG	2 cut(s)	28, 44
BslFI	GGGAC	1 cut(s)	506
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmFI	GGGAC	1 cut(s)	506
BsnI	GGCC	3 cut(s)	27, 114, 136
BsoBI	CYCGRG	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	415
BspACI	CCGC	3 cut(s)	386, 432, 573
BspANI	GGCC	3 cut(s)	27, 114, 136
BspCNI	CTCAG	2 cut(s)	111, 252
BspLI	GGNNCC	2 cut(s)	26, 586
BspT107I	GGYRCC	1 cut(s)	584
BssMI	GATC	1 cut(s)	415
BssNI	GRCGYC	2 cut(s)	350, 372
Bst4CI	ACNGT	1 cut(s)	141
BstACI	GRCGYC	2 cut(s)	350, 372
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	5 cut(s)	98, 131, 239, 532, 616
BstF5I	GGATG	1 cut(s)	428
BstKTI	GATC	1 cut(s)	418
BstMBI	GATC	1 cut(s)	415
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNSI	RCATGY	1 cut(s)	78
BstSCI	CCNGG	2 cut(s)	27, 42
BstV1I	GCAGC	1 cut(s)	371
BstV2I	GAAGAC	3 cut(s)	25, 45, 113
Bsu36I	CCTNAGG	1 cut(s)	616
BsuRI	GGCC	3 cut(s)	27, 114, 136
BtsCI	GGATG	1 cut(s)	428
BtsI	GCAGTG	2 cut(s)	81, 412
BtsIMutI	CAGTG	2 cut(s)	81, 412
Cac8I	GCNNGC	1 cut(s)	76
Cfr13I	GGNCC	3 cut(s)	25, 113, 292
CseI	GACGC	2 cut(s)	339, 361
Csp6I	GTAC	2 cut(s)	142, 326
CspCI	CAANNNNNGTGG	2 cut(s)	288, 323
CviAII	CATG	2 cut(s)	75, 173
CviJI	RGCY	9 cut(s)	27, 42, 47, 114, 136, 206, 243, 362, 592
CviKI_1	RGCY	9 cut(s)	27, 42, 47, 114, 136, 206, 243, 362, 592
CviQI	GTAC	2 cut(s)	142, 326
DdeI	CTNAG	5 cut(s)	98, 131, 239, 532, 616
DpnI	GATC	1 cut(s)	417
DpnII	GATC	1 cut(s)	415
EciI	GGCGGA	2 cut(s)	401, 421
Eco47I	GGWCC	1 cut(s)	292
Eco81I	CCTNAGG	1 cut(s)	616
Eco88I	CYCGRG	1 cut(s)	21
FaeI	CATG	2 cut(s)	78, 176
FaiI	YATR	5 cut(s)	76, 174, 212, 543, 595
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	2 cut(s)	74, 172
FbaI	TGATCA	1 cut(s)	415
FblI	GTMKAC	1 cut(s)	127
Fnu4HI	GCNGC	1 cut(s)	360
FokI	GGATG	1 cut(s)	415
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	1 cut(s)	360
HaeIII	GGCC	3 cut(s)	27, 114, 136
HapII	CCGG	2 cut(s)	28, 44
HgaI	GACGC	2 cut(s)	339, 361
Hin1I	GRCGYC	2 cut(s)	350, 372
Hin1II	CATG	2 cut(s)	78, 176
HincII	GTYRAC	1 cut(s)	128
HindII	GTYRAC	1 cut(s)	128
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	2 cut(s)	28, 44
Hpy166II	GTNNAC	2 cut(s)	60, 128
Hpy188I	TCNGA	3 cut(s)	440, 465, 567
Hpy188III	TCNNGA	4 cut(s)	314, 448, 505, 624
Hpy8I	GTNNAC	2 cut(s)	60, 128
Hpy99I	CGWCG	1 cut(s)	129
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	1 cut(s)	141
HpyCH4V	TGCA	3 cut(s)	86, 322, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	5 cut(s)	98, 131, 239, 532, 616
Hsp92I	GRCGYC	2 cut(s)	350, 372
Hsp92II	CATG	2 cut(s)	78, 176
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	1 cut(s)	415
LpnPI	CCDG	8 cut(s)	41, 57, 85, 275, 368, 461, 474, 603
Lsp1109I	GCAGC	1 cut(s)	371
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	351
MalI	GATC	1 cut(s)	417
MboI	GATC	1 cut(s)	415
MboII	GAAGA	5 cut(s)	25, 45, 113, 260, 593
MluCI	AATT	4 cut(s)	188, 223, 423, 466
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	7 cut(s)	170, 248, 386, 450, 513, 516, 625
MseI	TTAA	5 cut(s)	6, 234, 279, 477, 548
MspA1I	CMGCKG	1 cut(s)	573
MspI	CCGG	2 cut(s)	28, 44
MspR9I	CCNGG	2 cut(s)	29, 44
MwoI	GCNNNNNNNGC	1 cut(s)	356
NciI	CCSGG	2 cut(s)	29, 44
NdeII	GATC	1 cut(s)	415
NlaIII	CATG	2 cut(s)	78, 176
NlaIV	GGNNCC	2 cut(s)	26, 586
NmeAIII	GCCGAG	1 cut(s)	613
NmuCI	GTSAC	1 cut(s)	351
NspI	RCATGY	1 cut(s)	78
PaeI	GCATGC	1 cut(s)	78
PkrI	GCNGC	1 cut(s)	361
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PspN4I	GGNNCC	2 cut(s)	26, 586
PspPI	GGNCC	3 cut(s)	25, 113, 292
RsaI	GTAC	2 cut(s)	143, 327
RsaNI	GTAC	2 cut(s)	142, 326
SalI	GTCGAC	1 cut(s)	126
SaqAI	TTAA	5 cut(s)	6, 234, 279, 477, 548
SatI	GCNGC	1 cut(s)	360
Sau3AI	GATC	1 cut(s)	415
Sau96I	GGNCC	3 cut(s)	25, 113, 292
ScaI	AGTACT	1 cut(s)	327
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	2 cut(s)	29, 44
SetI	ASST	7 cut(s)	53, 198, 240, 396, 461, 527, 617
SfaNI	GCATC	1 cut(s)	400
SinI	GGWCC	1 cut(s)	292
SmlI	CTYRAG	2 cut(s)	454, 517
SmoI	CTYRAG	2 cut(s)	454, 517
SphI	GCATGC	1 cut(s)	78
Sse9I	AATT	4 cut(s)	188, 223, 423, 466
SsiI	CCGC	3 cut(s)	386, 432, 573
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	2 cut(s)	27, 42
TaaI	ACNGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	127, 504
TasI	AATT	4 cut(s)	188, 223, 423, 466
TatI	WGTACW	2 cut(s)	141, 325
Tru1I	TTAA	5 cut(s)	6, 234, 279, 477, 548
Tru9I	TTAA	5 cut(s)	6, 234, 279, 477, 548
TscAI	CASTG	2 cut(s)	88, 412
TseFI	GTSAC	1 cut(s)	351
TseI	GCWGC	1 cut(s)	359
Tsp45I	GTSAC	1 cut(s)	351
TspDTI	ATGAA	1 cut(s)	264
TspRI	CASTG	2 cut(s)	88, 412
VpaK11BI	GGWCC	1 cut(s)	292
XapI	RAATTY	2 cut(s)	223, 466
XceI	RCATGY	1 cut(s)	78
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	127
XspI	CTAG	1 cut(s)	48
ZrmI	AGTACT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.