RLG00000019002

Arogenate dehydrogenase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003175
Physical Location & Seq
Reverse (-)
44598001 .. 44602024
4024 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019002

Sequence Viewer

Length: 1803 bp
ATGCTGAAGATTGCCATCATCGGTTTTGGCAACTTGGGACAATCCCTTGCCAAGACCTTTGCTGACCTGGGCCACATGGTCCTTGCACATTCTAGATGTGACCACTCCAAAATAGCCCAAGACCTCGGCATTTCATATTTCTCTGACCCGCAAGACCTCTGTGAACAGAATCCACAGGTCATTTTGCTTTGCACCTCCATAATCTCCACAGAATCCGTCCTCAAATCTTTACCTTTCCAGCACCTTAGGCATGACACATTGTTTGTTGACATGCTTCCTGTCAAAGAGTTTTCAAAAGCATTATTACTCAAGTTGTTGCCTAGCTATATAGATGTTCTTTGCACCAACCCAATGTTCGGAGTTGAGAGAGGCAAACATGAGTGGAATGGCATGTTTTTTATGTACGAAAAGGTTCGAATTGGCTCTGACGGAGTGGGGATTTCTTTCTGTGATAACTTCTTAAACATGTTTGAGAAAGAAGGGTGTAGAATGGTGGAAGTAAGCTGTTCTGAGCAGGATACGTATGTCGCAGGTTCGCAGTTTATTACCCACACAGTTGGGAGAGTCTTGGGGATGTTGACATTGGAATCGACTCCAATAAATACAAAAGGTTATGAGACATTGTTGGATTTGGTGGACAACACAGCTAGGGATAGTTTTGATTTATATTATGAGTTGTTCATGTACAACAAAAATGCATTTGAGATGTTTGAGAGGCTGGACTTGGCTTTTGACACTTTGAAGAAACAGCTTTTTGGTTATTTGCATGATGTTGTGAGAAAGCAAGTATTTGATAATGCAGAGAAGGTAAAAATGGGGGAAGAGGAGTACAAGGTGTCTAAACCATCCCACAATGGAGCTGCCTCGGAATCTTCTTCAAAAGATATGAGGTCTCATAAGATTGCTCAGGTATCTAACCGTAAGGCACAGATATGTGACCACTTTGATGACAACTCAAGGCTCAAGATTGCAATTGTTGGTTTTGGGAACTTTGGTCAGTTTCTGGCTAAAACTATTATACATCAAGGTCATATAGTTCTAGCCTATTCTCGATCAGACTACTATGATGAGGCTCAAAAGTTGGGGGTAATTTACTTCTCTGATGTCGAGGAACTTTGCAAAGAGCATCCTGAAGTGATACTTTTGTGTACCTCTATTCTTTCAACTGAGAAAGTTCTCAGGTCATTTCCAGTTCAGAGGTTGATGAGGAATACTTTGTTTGTTGATGTTCTTTCAGTTAAAGAATTTCCAAAAAACTTGTTTCTTCAAAAATTGCCATTGAATTTTGATATTCTCTGTACGCATCCTATGTTTGGACCAGAGAGTGGTAAAAATGGGTGGGAGGCTCTTCCTTTTGTTTATGATAAGGTTAGGGTGGGAAGTGACGAATCAAGGGTATCACTCTGTGACCGATTTCTTCATATCTTTGCTCTTGAAGGGTGTCGAATGGTTGAAATGTCTTGTGCAGAGCATGATAGGCATGCAGCAGGGTCACAATTCCTTACGCACACAGTAGGAAGGGTTTTGGAAAAGCTGGGTTTGGAGTCGACACCTATCGTTACAAATGGTTACAAGGCTTTATTGAATTTGGTGGAGACTACAGTAGGAGATAGTTTTGATCTTTACTATGGCTTGTTCATGTATAATGTAAATGCAATGGACCAGCTAAATAGATTGGGCATGGCTTTTGACTCATTAGAGGAGCAGTTTTTGGGGCATTTGCATGGTGTTCTCCATAAGCAACATTCTGAGAATGCAAGCAAAACCTTGTTGCCAAATCATCCAAGAATGCAGCTCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00400 ko01100 ko01110 ko01230 map00400 map01100 map01110 map01230
Pfam Domains
Protein Families
F420_oxidored PDH

Protein Analysis

601

Amino Acids

68.1

Weight (kDa)

5.92

Isoelectric Point (pI)

33.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F420_oxidored PF03807 3 - 92 7.5e-10 NADP oxidoreductase coenzyme F420-dependent
2-Hacid_dh_C PF02826 3 - 90 4.5e-07 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
TYRAAT1_C PF26213 189 - 262 4.4e-33 TYRAAT1-like, C-terminal domain
F420_oxidored PF03807 322 - 411 5.5e-08 NADP oxidoreductase coenzyme F420-dependent
PDH_N PF02153 338 - 444 1.8e-08 Prephenate dehydrogenase, nucleotide-binding domain
TYRAAT1_C PF26213 508 - 581 2.9e-30 TYRAAT1-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 521
AccB7I CCANNNNNTGG 1 cut(s) 1325
AccI GTMKAC 1 cut(s) 1547
AciI CCGC 1 cut(s) 149
AcsI RAATTY 3 cut(s) 1244, 1282, 1585
AcuI CTGAAG 2 cut(s) 26, 1152
AdeI CACNNNGTG 1 cut(s) 1406
AfaI GTAC 5 cut(s) 404, 686, 830, 1150, 1300
AfiI CCNNNNNNNGG 3 cut(s) 356, 1313, 1325
AflIII ACRYGT 1 cut(s) 465
AgsI TTSAA 9 cut(s) 294, 742, 879, 1164, 1268, 1282, 1436, 1454, 1585
AjnI CCWGG 1 cut(s) 66
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AluBI AGCT 8 cut(s) 324, 504, 647, 751, 860, 1534, 1666, 1795
AluI AGCT 8 cut(s) 324, 504, 647, 751, 860, 1534, 1666, 1795
Alw26I GTCTC 3 cut(s) 611, 897, 1589
AlwNI CAGNNNCTG 1 cut(s) 1003
AoxI GGCC 1 cut(s) 70
ApeKI GCWGC 3 cut(s) 860, 1484, 1792
ApoI RAATTY 3 cut(s) 1244, 1282, 1585
ArsI GACNNNNNNTTYG 4 cut(s) 245, 277, 713, 745
Asp700I GAANNNNTTC 1 cut(s) 411
AspS9I GGNCC 4 cut(s) 70, 79, 1316, 1660
AsuII TTCGAA 1 cut(s) 415
AvaII GGWCC 3 cut(s) 79, 1316, 1660
AxyI CCTNAGG 1 cut(s) 245
BaeI ACNNNNGTAYC 4 cut(s) 510, 543, 1130, 1163
BbvI GCAGC 2 cut(s) 847, 1496
BccI CCATC 2 cut(s) 23, 853
BciT130I CCWGG 1 cut(s) 68
BciVI GTATCC 1 cut(s) 511
BcoDI GTCTC 3 cut(s) 611, 897, 1589
BfaI CTAG 4 cut(s) 93, 321, 648, 1040
BfmI CTRYAG 1 cut(s) 1599
BfuAI ACCTGC 1 cut(s) 521
BfuI GTATCC 1 cut(s) 511
BisI GCNGC 3 cut(s) 861, 1485, 1793
BlsI GCNGC 3 cut(s) 862, 1486, 1794
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 3 cut(s) 79, 1316, 1660
BmgT120I GGNCC 4 cut(s) 70, 79, 1316, 1660
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 2 cut(s) 1135, 1312
Bpu10I CCTNAGC 1 cut(s) 906
Bpu14I TTCGAA 1 cut(s) 415
BpuEI CTTGAG 3 cut(s) 293, 940, 947
BsaAI YACGTR 1 cut(s) 522
BsaBI GATNNNNATC 1 cut(s) 14
BsaI GGTCTC 1 cut(s) 897
BsaJI CCNNGG 3 cut(s) 67, 124, 864
Bsc4I CCNNNNNNNGG 3 cut(s) 356, 1313, 1325
Bse1I ACTGG 1 cut(s) 1190
Bse21I CCTNAGG 1 cut(s) 245
Bse3DI GCAATG 1 cut(s) 1662
Bse8I GATNNNNATC 1 cut(s) 14
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 3 cut(s) 67, 124, 864
BseGI GGATG 5 cut(s) 579, 845, 1126, 1303, 1780
BseJI GATNNNNATC 1 cut(s) 14
BseLI CCNNNNNNNGG 3 cut(s) 356, 1313, 1325
BseMI GCAATG 1 cut(s) 1662
BseMII CTCAG 5 cut(s) 501, 920, 1158, 1192, 1740
BseNI ACTGG 1 cut(s) 1190
BseRI GAGGAG 2 cut(s) 839, 1715
BseXI GCAGC 2 cut(s) 847, 1496
BseYI CCCAGC 1 cut(s) 1534
BsgI GTGCAG 1 cut(s) 1485
BshFI GGCC 1 cut(s) 72
BslFI GGGAC 1 cut(s) 51
BslI CCNNNNNNNGG 3 cut(s) 356, 1313, 1325
BsmAI GTCTC 3 cut(s) 611, 897, 1589
BsmFI GGGAC 1 cut(s) 51
BsmI GAATGC 2 cut(s) 1759, 1794
BsnI GGCC 1 cut(s) 72
Bso31I GGTCTC 1 cut(s) 897
Bsp119I TTCGAA 1 cut(s) 415
Bsp1407I TGTACA 1 cut(s) 684
Bsp143I GATC 2 cut(s) 1052, 1618
BspACI CCGC 1 cut(s) 149
BspANI GGCC 1 cut(s) 72
BspCNI CTCAG 5 cut(s) 502, 919, 1159, 1191, 1741
BspMI ACCTGC 1 cut(s) 521
BspQI GCTCTTC 1 cut(s) 1353
BspT104I TTCGAA 1 cut(s) 415
BspTNI GGTCTC 1 cut(s) 897
BsrDI GCAATG 1 cut(s) 1662
BsrGI TGTACA 1 cut(s) 684
BsrI ACTGG 1 cut(s) 1190
BssECI CCNNGG 3 cut(s) 67, 124, 864
BssMI GATC 2 cut(s) 1052, 1618
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 4 cut(s) 556, 920, 1513, 1603
Bst6I CTCTTC 2 cut(s) 816, 1353
BstAUI TGTACA 1 cut(s) 684
BstBAI YACGTR 1 cut(s) 522
BstBI TTCGAA 1 cut(s) 415
BstC8I GCNNGC 2 cut(s) 1482, 1759
BstDEI CTNAG 6 cut(s) 245, 510, 906, 1167, 1178, 1749
BstF5I GGATG 5 cut(s) 579, 845, 1126, 1303, 1780
BstKTI GATC 2 cut(s) 1055, 1621
BstMAI GTCTC 3 cut(s) 611, 897, 1589
BstMBI GATC 2 cut(s) 1052, 1618
BstMWI GCNNNNNNNGC 2 cut(s) 247, 1477
BstNI CCWGG 1 cut(s) 68
BstNSI RCATGY 4 cut(s) 274, 394, 469, 1484
BstSCI CCNGG 1 cut(s) 66
BstSFI CTRYAG 1 cut(s) 1599
BstSNI TACGTA 1 cut(s) 522
BstV1I GCAGC 2 cut(s) 847, 1496
BstXI CCANNNNNNTGG 1 cut(s) 557
Bsu36I CCTNAGG 1 cut(s) 245
BsuI GTATCC 1 cut(s) 511
BsuRI GGCC 1 cut(s) 72
BtsCI GGATG 5 cut(s) 579, 845, 1126, 1303, 1780
BveI ACCTGC 1 cut(s) 521
Cac8I GCNNGC 2 cut(s) 1482, 1759
CaiI CAGNNNCTG 1 cut(s) 1003
Cfr13I GGNCC 4 cut(s) 70, 79, 1316, 1660
Csp6I GTAC 5 cut(s) 403, 685, 829, 1149, 1299
CviQI GTAC 5 cut(s) 403, 685, 829, 1149, 1299
DdeI CTNAG 6 cut(s) 245, 510, 906, 1167, 1178, 1749
DpnI GATC 2 cut(s) 1054, 1620
DpnII GATC 2 cut(s) 1052, 1618
DraIII CACNNNGTG 1 cut(s) 1406
Eam1104I CTCTTC 2 cut(s) 816, 1353
EarI CTCTTC 2 cut(s) 816, 1353
Eco105I TACGTA 1 cut(s) 522
Eco31I GGTCTC 1 cut(s) 897
Eco47I GGWCC 3 cut(s) 79, 1316, 1660
Eco57I CTGAAG 2 cut(s) 26, 1152
Eco81I CCTNAGG 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 66
EcoT22I ATGCAT 1 cut(s) 700
FalI AAGNNNNNCTT 2 cut(s) 1125, 1157
FaqI GGGAC 1 cut(s) 51
FauI CCCGC 1 cut(s) 156
FblI GTMKAC 1 cut(s) 1547
Fnu4HI GCNGC 3 cut(s) 861, 1485, 1793
FokI GGATG 5 cut(s) 586, 832, 1113, 1290, 1767
Fsp4HI GCNGC 3 cut(s) 861, 1485, 1793
FspBI CTAG 4 cut(s) 93, 321, 648, 1040
GluI GCNGC 3 cut(s) 861, 1485, 1793
GsaI CCCAGC 1 cut(s) 1538
HaeIII GGCC 1 cut(s) 72
HincII GTYRAC 3 cut(s) 268, 579, 1548
HindII GTYRAC 3 cut(s) 268, 579, 1548
HinfI GANTC 9 cut(s) 169, 212, 564, 587, 592, 869, 1388, 1544, 1691
Hpy166II GTNNAC 6 cut(s) 164, 268, 579, 637, 1149, 1548
Hpy188I TCNGA 9 cut(s) 145, 359, 427, 511, 868, 1057, 1102, 1197, 1750
Hpy188III TCNNGA 5 cut(s) 93, 964, 1050, 1130, 1433
Hpy8I GTNNAC 6 cut(s) 164, 268, 579, 637, 1149, 1548
HpyAV CCTTC 4 cut(s) 473, 799, 1430, 1512
HpyCH4III ACNGT 4 cut(s) 556, 920, 1513, 1603
HpyCH4IV ACGT 1 cut(s) 521
HpyF10VI GCNNNNNNNGC 2 cut(s) 247, 1477
HpyF3I CTNAG 6 cut(s) 245, 510, 906, 1167, 1178, 1749
HpySE526I ACGT 1 cut(s) 521
Kzo9I GATC 2 cut(s) 1052, 1618
LguI GCTCTTC 1 cut(s) 1353
LmnI GCTCC 3 cut(s) 857, 1702, 1800
Lsp1109I GCAGC 2 cut(s) 847, 1496
LweI GCATC 2 cut(s) 1135, 1312
MaeI CTAG 4 cut(s) 93, 321, 648, 1040
MaeII ACGT 1 cut(s) 521
MaeIII GTNAC 7 cut(s) 98, 935, 1382, 1406, 1491, 1558, 1568
MalI GATC 2 cut(s) 1054, 1620
MboI GATC 2 cut(s) 1052, 1618
MboII GAAGA 8 cut(s) 19, 754, 833, 864, 867, 1256, 1340, 1409
MfeI CAATTG 1 cut(s) 972
MluCI AATT 8 cut(s) 417, 972, 1089, 1244, 1271, 1282, 1496, 1585
MlyI GAGTC 4 cut(s) 573, 586, 1553, 1685
MmeI TCCRAC 1 cut(s) 606
Mph1103I ATGCAT 1 cut(s) 700
MroXI GAANNNNTTC 1 cut(s) 411
MseI TTAA 2 cut(s) 461, 1239
MslI CAYNNNNRTG 3 cut(s) 931, 945, 1722
MspR9I CCNGG 1 cut(s) 68
MunI CAATTG 1 cut(s) 972
Mva1269I GAATGC 2 cut(s) 1759, 1794
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 247, 1477
NdeII GATC 2 cut(s) 1052, 1618
NmeAIII GCCGAG 1 cut(s) 105
NmuCI GTSAC 5 cut(s) 98, 935, 1382, 1406, 1491
NsiI ATGCAT 1 cut(s) 700
NspI RCATGY 4 cut(s) 274, 394, 469, 1484
NspV TTCGAA 1 cut(s) 415
PaeI GCATGC 1 cut(s) 1484
PciI ACATGT 1 cut(s) 465
PciSI GCTCTTC 1 cut(s) 1353
PctI GAATGC 2 cut(s) 1759, 1794
PdmI GAANNNNTTC 1 cut(s) 411
PfeI GAWTC 5 cut(s) 169, 212, 587, 869, 1388
PflMI CCANNNNNTGG 1 cut(s) 1325
PkrI GCNGC 3 cut(s) 862, 1486, 1794
PleI GAGTC 4 cut(s) 572, 586, 1552, 1685
PpsI GAGTC 4 cut(s) 572, 586, 1552, 1685
Ppu21I YACGTR 1 cut(s) 522
PscI ACATGT 1 cut(s) 465
Psp6I CCWGG 1 cut(s) 66
PspFI CCCAGC 1 cut(s) 1534
PspGI CCWGG 1 cut(s) 66
PspPI GGNCC 4 cut(s) 70, 79, 1316, 1660
PstNI CAGNNNCTG 1 cut(s) 1003
RsaI GTAC 5 cut(s) 404, 686, 830, 1150, 1300
RsaNI GTAC 5 cut(s) 403, 685, 829, 1149, 1299
RseI CAYNNNNRTG 3 cut(s) 931, 945, 1722
SalI GTCGAC 1 cut(s) 1546
SapI GCTCTTC 1 cut(s) 1353
SaqAI TTAA 2 cut(s) 461, 1239
SatI GCNGC 3 cut(s) 861, 1485, 1793
Sau3AI GATC 2 cut(s) 1052, 1618
Sau96I GGNCC 4 cut(s) 70, 79, 1316, 1660
SchI GAGTC 4 cut(s) 573, 586, 1553, 1685
ScrFI CCNGG 1 cut(s) 68
SfaNI GCATC 2 cut(s) 1135, 1312
SfcI CTRYAG 1 cut(s) 1599
SfuI TTCGAA 1 cut(s) 415
SinI GGWCC 3 cut(s) 79, 1316, 1660
SmiMI CAYNNNNRTG 3 cut(s) 931, 945, 1722
SmlI CTYRAG 3 cut(s) 308, 955, 962
SmoI CTYRAG 3 cut(s) 308, 955, 962
SnaBI TACGTA 1 cut(s) 522
SphI GCATGC 1 cut(s) 1484
Sse9I AATT 8 cut(s) 417, 972, 1089, 1244, 1271, 1282, 1496, 1585
SsiI CCGC 1 cut(s) 149
SspMI CTAG 4 cut(s) 93, 321, 648, 1040
StyD4I CCNGG 1 cut(s) 66
TaaI ACNGT 4 cut(s) 556, 920, 1513, 1603
TaiI ACGT 1 cut(s) 524
TaqI TCGA 6 cut(s) 415, 590, 1051, 1107, 1444, 1547
TaqII GACCGA 1 cut(s) 1425
TasI AATT 8 cut(s) 417, 972, 1089, 1244, 1271, 1282, 1496, 1585
TatI WGTACW 2 cut(s) 684, 828
TfiI GAWTC 5 cut(s) 169, 212, 587, 869, 1388
Tru1I TTAA 2 cut(s) 461, 1239
Tru9I TTAA 2 cut(s) 461, 1239
TseFI GTSAC 5 cut(s) 98, 935, 1382, 1406, 1491
TseI GCWGC 3 cut(s) 860, 1484, 1792
Tsp45I GTSAC 5 cut(s) 98, 935, 1382, 1406, 1491
TspDTI ATGAA 4 cut(s) 123, 670, 1409, 1627
TspGWI ACGGA 2 cut(s) 205, 444
Van91I CCANNNNNTGG 1 cut(s) 1325
VpaK11BI GGWCC 3 cut(s) 79, 1316, 1660
XapI RAATTY 3 cut(s) 1244, 1282, 1585
XbaI TCTAGA 1 cut(s) 92
XceI RCATGY 4 cut(s) 274, 394, 469, 1484
XmiI GTMKAC 1 cut(s) 1547
XmnI GAANNNNTTC 1 cut(s) 411
XspI CTAG 4 cut(s) 93, 321, 648, 1040
Zsp2I ATGCAT 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.