Rmu_co8477103.1_g000001

Arogenate dehydrogenase 1

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8477103.1
Physical Location & Seq
Reverse (-)
162 .. 2141
1980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8477103.1_g000001.1.cds

Sequence Viewer

Length: 1826 bp
ccctcaagatcgccatcatcggcttcggcaacttcggccaattcctcgccaaaaccctaacccgccaaggccacaccgtcctcgcctattcccgctccgaccactccaaagcggcagccgccctcggcgtctccttcttctccgacccccacgacctctgcgagcagcacccccacgtcatcctcctctgcacctccatcatctccgccgagaaagtaatcaactccctccccctccagcgcctccgccgcaacactctcttcgccgacgtcctctccgtcaaggagttctccaaagctctgttcttgaagtcccttccgagctatttcgatgtgatctgcacgcacccgatgttcgggccggagagcgcgaagaacggctggagcgggctgtgctttgtttatgagaaagtgaggattggatcggaggtgtctagagtttcgaggtgtgacaagttcttgagcattttcgagagggaagggtgtgaaatggtggaaatgagctgtgccgagcatgataagtttgcggcggggtcgcagtttattacacacactgttgggagggtgcttgagaggttggggttggagtcgacgccgattaatactagagggtatgagacattgttggatttggtggagaatacggctggggatagctttgatttgtattacgggttgtttatgtataataagaatgcgttggagatgctggagaggttggacttggctttcgaggatttgaagaagcagctttttgggaggttgcatgatgttgtgaggaaccagttgtttgggaatgctgaaaaggtgaggacgttgcaggaggagtatgtgaaccagaatggagctgcattggtgcgttcttcgaaagctgtgagaccctctaaagcacatattttggatagctccgaagatcattcaaggcttaagattggaattgttggttttggcaactttggtcagttccttgctaaaaccattgtacgccaaggccacaaggttctagcctattctcgctcagactactctgatgttgctgaacagttgggtgtttcttacttctcggacgcggatgatttttgcgaggagcatccagaagtaatactcctttgcacatcgattctttccactgagaaagttttgatgtcactcccgcttcagaggttgaagcggagtactttgtttgttgatgttctatccgtgaaagaattcccaaaaaacctgtttcttcaaaatttgcctctagattttgatattctctgcacgcatcctatgtttggaccagaaagtggtaaaaatggctggaatggtcttgcttttgtttatgataggatcagaattggaaatgacgaatcaagggtgtcaaggtgtgatcaatttcttgatatttttgcgcaagaagggtgtcgaatggtggatatggcttgcgaagagcatgataagcatgcagcagggtcacaattcatcacacacactatgggaagagttttggaaaagttgggtttggagtcgacgccggtcaatacaaaaggttacaagactttgttgaatttggtggagaatacagcaggagatagctttgatctctactatggattgttcatgtacaatgtaaatgcaatggagcagctaaagaggcttgaccttgcatttgaagcattaaagaaacagctttttgggcggttgcatggtgttcttcggaagcaactttttgagaatgcagatgattctcaagttatgaaggagcagcatttgttgccaacaccattggagaatgaatctgcagcgacgccttctttcaaggctcttaacagtcagaacaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

607

Amino Acids

68.34

Weight (kDa)

6.13

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 272
Acc16I TGCGCA 1 cut(s) 1394
AccB7I CCANNNNNTGG 1 cut(s) 1288
AccBSI CCGCTC 2 cut(s) 95, 386
AccI GTMKAC 2 cut(s) 589, 1510
AccII CGCG 2 cut(s) 370, 1069
AclWI GGATC 2 cut(s) 429, 1339
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 3 cut(s) 1207, 1233, 1548
AcuI CTGAAG 1 cut(s) 1141
AcyI GRCGYC 5 cut(s) 128, 269, 592, 1513, 1789
AfaI GTAC 3 cut(s) 983, 1176, 1606
AfiI CCNNNNNNNGG 3 cut(s) 355, 1276, 1288
AflII CTTAAG 1 cut(s) 925
AgsI TTSAA 8 cut(s) 309, 741, 920, 1167, 1231, 1548, 1654, 1800
AjiI CACGTC 1 cut(s) 177
AjuI GAANNNNNNNTTGG 2 cut(s) 286, 318
Alw26I GTCTC 3 cut(s) 135, 610, 870
AlwI GGATC 2 cut(s) 429, 1339
AoxI GGCC 4 cut(s) 36, 69, 358, 990
ApeKI GCWGC 8 cut(s) 115, 165, 747, 847, 1447, 1626, 1746, 1783
ApoI RAATTY 3 cut(s) 1207, 1233, 1548
ArsI GACNNNNNNTTYG 4 cut(s) 712, 744, 1633, 1665
AseI ATTAAT 1 cut(s) 599
Asp700I GAANNNNTTC 1 cut(s) 1207
AspLEI GCGC 3 cut(s) 242, 370, 1395
AspS9I GGNCC 2 cut(s) 358, 1279
AsuHPI GGTGA 1 cut(s) 819
AsuII TTCGAA 1 cut(s) 865
AvaII GGWCC 1 cut(s) 1279
BbvI GCAGC 8 cut(s) 127, 177, 759, 834, 1459, 1638, 1758, 1795
BccI CCATC 2 cut(s) 22, 205
BceAI ACGGC 2 cut(s) 393, 659
BclI TGATCA 1 cut(s) 1371
BcoDI GTCTC 3 cut(s) 135, 610, 870
BfaI CTAG 4 cut(s) 434, 605, 1003, 1243
BfmI CTRYAG 1 cut(s) 1781
BfoI RGCGCY 1 cut(s) 243
BfrI CTTAAG 1 cut(s) 925
BmcAI AGTACT 1 cut(s) 1176
Bme18I GGWCC 1 cut(s) 1279
BmgBI CACGTC 1 cut(s) 177
BmgT120I GGNCC 2 cut(s) 358, 1279
BmiI GGNNCC 1 cut(s) 781
BmsI GCATC 3 cut(s) 695, 1098, 1275
BoxI GACNNNNGTC 1 cut(s) 1516
BpmI CTGGAG 3 cut(s) 220, 402, 730
Bpu14I TTCGAA 1 cut(s) 865
BpuEI CTTGAG 3 cut(s) 480, 589, 1715
Bsa29I ATCGAT 1 cut(s) 1117
BsaBI GATNNNNATC 1 cut(s) 13
BsaHI GRCGYC 5 cut(s) 128, 269, 592, 1513, 1789
BsaI GGTCTC 1 cut(s) 870
BsaJI CCNNGG 3 cut(s) 66, 123, 987
BsaXI ACNNNNNCTCC 2 cut(s) 259, 289
Bsc4I CCNNNNNNNGG 3 cut(s) 355, 1276, 1288
Bse118I RCCGGY 1 cut(s) 1515
Bse1I ACTGG 1 cut(s) 783
Bse3DI GCAATG 1 cut(s) 1625
Bse8I GATNNNNATC 1 cut(s) 13
BseCI ATCGAT 1 cut(s) 1117
BseDI CCNNGG 3 cut(s) 66, 123, 987
BseGI GGATG 4 cut(s) 179, 1077, 1089, 1266
BseJI GATNNNNATC 1 cut(s) 13
BseLI CCNNNNNNNGG 3 cut(s) 355, 1276, 1288
BseMI GCAATG 1 cut(s) 1625
BseMII CTCAG 2 cut(s) 1031, 1121
BseNI ACTGG 1 cut(s) 783
BseRI GAGGAG 3 cut(s) 175, 838, 1099
BseXI GCAGC 8 cut(s) 127, 177, 759, 834, 1459, 1638, 1758, 1795
BseYI CCCAGC 1 cut(s) 646
BsgI GTGCAG 3 cut(s) 174, 324, 1245
Bsh1236I CGCG 2 cut(s) 370, 1069
BshFI GGCC 4 cut(s) 38, 71, 360, 992
BshVI ATCGAT 1 cut(s) 1117
BsiSI CCGG 2 cut(s) 361, 1516
BslFI GGGAC 1 cut(s) 297
BslI CCNNNNNNNGG 3 cut(s) 355, 1276, 1288
BsmAI GTCTC 3 cut(s) 135, 610, 870
BsmBI CGTCTC 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 297
BsmI GAATGC 3 cut(s) 699, 801, 1722
BsnI GGCC 4 cut(s) 38, 71, 360, 992
Bso31I GGTCTC 1 cut(s) 870
Bsp119I TTCGAA 1 cut(s) 865
Bsp1407I TGTACA 1 cut(s) 1604
Bsp143I GATC 7 cut(s) 8, 335, 421, 912, 1331, 1371, 1581
BspANI GGCC 4 cut(s) 38, 71, 360, 992
BspCNI CTCAG 2 cut(s) 1030, 1122
BspDI ATCGAT 1 cut(s) 1117
BspFNI CGCG 2 cut(s) 370, 1069
BspLI GGNNCC 1 cut(s) 781
BspMAI CTGCAG 1 cut(s) 1785
BspPI GGATC 2 cut(s) 429, 1339
BspQI GCTCTTC 1 cut(s) 1424
BspT104I TTCGAA 1 cut(s) 865
BspTI CTTAAG 1 cut(s) 925
BspTNI GGTCTC 1 cut(s) 870
BsrBI CCGCTC 2 cut(s) 95, 386
BsrDI GCAATG 1 cut(s) 1625
BsrFI RCCGGY 1 cut(s) 1515
BsrGI TGTACA 1 cut(s) 1604
BsrI ACTGG 1 cut(s) 783
BssAI RCCGGY 1 cut(s) 1515
BssECI CCNNGG 3 cut(s) 66, 123, 987
BssMI GATC 7 cut(s) 8, 335, 421, 912, 1331, 1371, 1581
BssNI GRCGYC 5 cut(s) 128, 269, 592, 1513, 1789
BssT1I CCWWGG 2 cut(s) 66, 987
Bst4CI ACNGT 4 cut(s) 78, 555, 1043, 1813
Bst6I CTCTTC 3 cut(s) 265, 1424, 1476
BstACI GRCGYC 5 cut(s) 128, 269, 592, 1513, 1789
BstAFI CTTAAG 1 cut(s) 925
BstAPI GCANNNNNTGC 1 cut(s) 1755
BstAUI TGTACA 1 cut(s) 1604
BstBI TTCGAA 1 cut(s) 865
BstC8I GCNNGC 6 cut(s) 163, 343, 388, 1264, 1425, 1445
BstDEI CTNAG 2 cut(s) 1017, 1130
BstF5I GGATG 4 cut(s) 179, 1077, 1089, 1266
BstFNI CGCG 2 cut(s) 370, 1069
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 3 cut(s) 242, 370, 1395
BstKTI GATC 7 cut(s) 11, 338, 424, 915, 1334, 1374, 1584
BstMAI GTCTC 3 cut(s) 135, 610, 870
BstMBI GATC 7 cut(s) 8, 335, 421, 912, 1331, 1371, 1581
BstMWI GCNNNNNNNGC 9 cut(s) 35, 118, 248, 392, 1440, 1635, 1654, 1677, 1755
BstNSI RCATGY 1 cut(s) 1447
BstPAI GACNNNNGTC 1 cut(s) 1516
BstSFI CTRYAG 1 cut(s) 1781
BstUI CGCG 2 cut(s) 370, 1069
BstV1I GCAGC 8 cut(s) 127, 177, 759, 834, 1459, 1638, 1758, 1795
BstXI CCANNNNNNTGG 1 cut(s) 790
Bsu15I ATCGAT 1 cut(s) 1117
BsuRI GGCC 4 cut(s) 38, 71, 360, 992
BsuTUI ATCGAT 1 cut(s) 1117
BtrI CACGTC 1 cut(s) 177
BtsCI GGATG 4 cut(s) 179, 1077, 1089, 1266
BtsIMutI CAGTG 2 cut(s) 551, 1127
Cac8I GCNNGC 6 cut(s) 163, 343, 388, 1264, 1425, 1445
CfoI GCGC 3 cut(s) 242, 370, 1395
Cfr10I RCCGGY 1 cut(s) 1515
Cfr13I GGNCC 2 cut(s) 358, 1279
ClaI ATCGAT 1 cut(s) 1117
CseI GACGC 5 cut(s) 117, 600, 1075, 1521, 1797
Csp6I GTAC 3 cut(s) 982, 1175, 1605
CviAII CATG 6 cut(s) 514, 766, 1435, 1444, 1602, 1687
CviQI GTAC 3 cut(s) 982, 1175, 1605
DdeI CTNAG 2 cut(s) 1017, 1130
DpnI GATC 7 cut(s) 10, 337, 423, 914, 1333, 1373, 1583
DpnII GATC 7 cut(s) 8, 335, 421, 912, 1331, 1371, 1581
EaeI YGGCCR 1 cut(s) 36
Eam1104I CTCTTC 3 cut(s) 265, 1424, 1476
EarI CTCTTC 3 cut(s) 265, 1424, 1476
EciI GGCGGA 2 cut(s) 195, 235
Eco130I CCWWGG 2 cut(s) 66, 987
Eco31I GGTCTC 1 cut(s) 870
Eco47I GGWCC 1 cut(s) 1279
Eco57I CTGAAG 1 cut(s) 1141
EcoRI GAATTC 1 cut(s) 1207
EcoT14I CCWWGG 2 cut(s) 66, 987
ErhI CCWWGG 2 cut(s) 66, 987
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 6 cut(s) 517, 769, 1438, 1447, 1605, 1690
FaqI GGGAC 1 cut(s) 297
FatI CATG 6 cut(s) 513, 765, 1434, 1443, 1601, 1686
FauI CCCGC 5 cut(s) 70, 100, 379, 522, 1160
FbaI TGATCA 1 cut(s) 1371
FblI GTMKAC 2 cut(s) 589, 1510
FokI GGATG 4 cut(s) 166, 1076, 1084, 1253
FspBI CTAG 4 cut(s) 434, 605, 1003, 1243
FspI TGCGCA 1 cut(s) 1394
GlaI GCGC 3 cut(s) 241, 369, 1394
GsaI CCCAGC 1 cut(s) 650
GsuI CTGGAG 3 cut(s) 220, 402, 730
HaeII RGCGCY 1 cut(s) 243
HaeIII GGCC 4 cut(s) 38, 71, 360, 992
HapII CCGG 2 cut(s) 361, 1516
HgaI GACGC 5 cut(s) 117, 600, 1075, 1521, 1797
HhaI GCGC 3 cut(s) 242, 370, 1395
Hin1I GRCGYC 5 cut(s) 128, 269, 592, 1513, 1789
Hin1II CATG 6 cut(s) 517, 769, 1438, 1447, 1605, 1690
Hin6I GCGC 3 cut(s) 240, 368, 1393
HinP1I GCGC 3 cut(s) 240, 368, 1393
HincII GTYRAC 2 cut(s) 590, 1511
HindII GTYRAC 2 cut(s) 590, 1511
HinfI GANTC 6 cut(s) 586, 1119, 1351, 1507, 1726, 1777
HpaII CCGG 2 cut(s) 361, 1516
HphI GGTGA 1 cut(s) 819
Hpy166II GTNNAC 3 cut(s) 590, 834, 1511
Hpy188III TCNNGA 8 cut(s) 6, 306, 434, 459, 471, 1093, 1243, 1381
Hpy8I GTNNAC 3 cut(s) 590, 834, 1511
Hpy99I CGWCG 4 cut(s) 271, 594, 1515, 1791
HpyAV CCTTC 6 cut(s) 144, 325, 472, 1393, 1734, 1802
HpyCH4III ACNGT 4 cut(s) 78, 555, 1043, 1813
HpyCH4IV ACGT 3 cut(s) 176, 269, 814
HpyF10VI GCNNNNNNNGC 9 cut(s) 35, 118, 248, 392, 1440, 1635, 1654, 1677, 1755
HpyF3I CTNAG 2 cut(s) 1017, 1130
HpySE526I ACGT 3 cut(s) 176, 269, 814
Hsp92I GRCGYC 5 cut(s) 128, 269, 592, 1513, 1789
Hsp92II CATG 6 cut(s) 517, 769, 1438, 1447, 1605, 1690
HspAI GCGC 3 cut(s) 240, 368, 1393
Ksp22I TGATCA 1 cut(s) 1371
Kzo9I GATC 7 cut(s) 8, 335, 421, 912, 1331, 1371, 1581
LguI GCTCTTC 1 cut(s) 1424
LmnI GCTCC 7 cut(s) 100, 383, 844, 910, 1086, 1623, 1743
Lsp1109I GCAGC 8 cut(s) 127, 177, 759, 834, 1459, 1638, 1758, 1795
LweI GCATC 3 cut(s) 695, 1098, 1275
MaeI CTAG 4 cut(s) 434, 605, 1003, 1243
MaeII ACGT 3 cut(s) 176, 269, 814
MaeIII GTNAC 4 cut(s) 448, 1145, 1454, 1531
MalI GATC 7 cut(s) 10, 337, 423, 914, 1333, 1373, 1583
MbiI CCGCTC 2 cut(s) 95, 386
MboI GATC 7 cut(s) 8, 335, 421, 912, 1331, 1371, 1581
MluCI AATT 8 cut(s) 40, 935, 1207, 1233, 1337, 1375, 1459, 1548
MlyI GAGTC 2 cut(s) 595, 1516
MmeI TCCRAC 6 cut(s) 122, 167, 563, 605, 680, 698
MroXI GAANNNNTTC 1 cut(s) 1207
MseI TTAA 4 cut(s) 599, 926, 1660, 1808
MspCI CTTAAG 1 cut(s) 925
MspI CCGG 2 cut(s) 361, 1516
Mva1269I GAATGC 3 cut(s) 699, 801, 1722
MvnI CGCG 2 cut(s) 370, 1069
MwoI GCNNNNNNNGC 9 cut(s) 35, 118, 248, 392, 1440, 1635, 1654, 1677, 1755
NdeII GATC 7 cut(s) 8, 335, 421, 912, 1331, 1371, 1581
NlaIII CATG 6 cut(s) 517, 769, 1438, 1447, 1605, 1690
NlaIV GGNNCC 1 cut(s) 781
NmeAIII GCCGAG 3 cut(s) 104, 234, 534
NmuCI GTSAC 3 cut(s) 448, 1145, 1454
NsbI TGCGCA 1 cut(s) 1394
NspI RCATGY 1 cut(s) 1447
NspV TTCGAA 1 cut(s) 865
PaeI GCATGC 1 cut(s) 1447
PciSI GCTCTTC 1 cut(s) 1424
PcsI WCGNNNNNNNCGW 2 cut(s) 158, 275
PctI GAATGC 3 cut(s) 699, 801, 1722
PdmI GAANNNNTTC 1 cut(s) 1207
PfeI GAWTC 4 cut(s) 1119, 1351, 1726, 1777
PflMI CCANNNNNTGG 1 cut(s) 1288
PleI GAGTC 2 cut(s) 594, 1515
PpsI GAGTC 2 cut(s) 594, 1515
PshAI GACNNNNGTC 1 cut(s) 1516
PshBI ATTAAT 1 cut(s) 599
PspFI CCCAGC 1 cut(s) 646
PspN4I GGNNCC 1 cut(s) 781
PspPI GGNCC 2 cut(s) 358, 1279
PstI CTGCAG 1 cut(s) 1785
RsaI GTAC 3 cut(s) 983, 1176, 1606
RsaNI GTAC 3 cut(s) 982, 1175, 1605
SalI GTCGAC 2 cut(s) 588, 1509
SapI GCTCTTC 1 cut(s) 1424
SaqAI TTAA 4 cut(s) 599, 926, 1660, 1808
Sau3AI GATC 7 cut(s) 8, 335, 421, 912, 1331, 1371, 1581
Sau96I GGNCC 2 cut(s) 358, 1279
ScaI AGTACT 1 cut(s) 1176
SchI GAGTC 2 cut(s) 595, 1516
SfaNI GCATC 3 cut(s) 695, 1098, 1275
SfcI CTRYAG 1 cut(s) 1781
SfuI TTCGAA 1 cut(s) 865
SinI GGWCC 1 cut(s) 1279
SmlI CTYRAG 5 cut(s) 4, 459, 568, 925, 1730
SmoI CTYRAG 5 cut(s) 4, 459, 568, 925, 1730
SphI GCATGC 1 cut(s) 1447
Sse9I AATT 8 cut(s) 40, 935, 1207, 1233, 1337, 1375, 1459, 1548
SspMI CTAG 4 cut(s) 434, 605, 1003, 1243
StyI CCWWGG 2 cut(s) 66, 987
TaaI ACNGT 4 cut(s) 78, 555, 1043, 1813
TaiI ACGT 3 cut(s) 179, 272, 817
TaqI TCGA 9 cut(s) 329, 442, 470, 589, 731, 865, 1117, 1407, 1510
TasI AATT 8 cut(s) 40, 935, 1207, 1233, 1337, 1375, 1459, 1548
TatI WGTACW 2 cut(s) 1174, 1604
TauI GCSGC 4 cut(s) 115, 121, 251, 529
TfiI GAWTC 4 cut(s) 1119, 1351, 1726, 1777
Tru1I TTAA 4 cut(s) 599, 926, 1660, 1808
Tru9I TTAA 4 cut(s) 599, 926, 1660, 1808
TscAI CASTG 2 cut(s) 558, 1134
TseFI GTSAC 3 cut(s) 448, 1145, 1454
TseI GCWGC 8 cut(s) 115, 165, 747, 847, 1447, 1626, 1746, 1783
Tsp45I GTSAC 3 cut(s) 448, 1145, 1454
TspDTI ATGAA 4 cut(s) 1452, 1590, 1753, 1790
TspGWI ACGGA 2 cut(s) 267, 1188
TspRI CASTG 2 cut(s) 558, 1134
Van91I CCANNNNNTGG 1 cut(s) 1288
Vha464I CTTAAG 1 cut(s) 925
VpaK11BI GGWCC 1 cut(s) 1279
VspI ATTAAT 1 cut(s) 599
XapI RAATTY 3 cut(s) 1207, 1233, 1548
XbaI TCTAGA 2 cut(s) 433, 1242
XceI RCATGY 1 cut(s) 1447
XmiI GTMKAC 2 cut(s) 589, 1510
XmnI GAANNNNTTC 1 cut(s) 1207
XspI CTAG 4 cut(s) 434, 605, 1003, 1243
ZraI GACGTC 1 cut(s) 270
ZrmI AGTACT 1 cut(s) 1176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.