Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001069

Physical Location & Seq

Genomic Coordinates Reverse (-)

60126982 .. 60129401

Gene Structure 2420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020021

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGGGAGGCAACTGAATCTGCTTTTTATGCAAATGTGCTTGATTCTGGGTGGTTTGCCATTTCATGGATCTGCAGAGACAATGCTGTCTAATTCACCCAAAAAAAAAAAAGAGACCCAAGCTTTGGCTGGAAAAATTTCAGAAATCTGGCTGCCCCTCCTCCCGGAAAGGTATCCCACCACCTATTGCCAGCAGGCCACGTCCCAGCTAATTAAAGCTATCCATCCTCGTGATTCTGTAAGGCCTTCAAGTATTGCACTTCCACCTTCTATGCCATCTTCTGGAGCTCCTGCAAAGAAATGGGTGCATGCTCTTGAACATTCCCCCTCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

112

Amino Acids

12.16

Weight (kDa)

9.7

Isoelectric Point (pI)

60.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56890
fragaria_vesca	FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370
malus_domestica	MD02G1079800.v1.1 MD09G1193100.v1.1 MD15G1207500.v1.1
prunus_persica	Prupe.3G049500_v2.0.a1 Prupe.7G209300_v2.0.a1 Prupe.7G209300_v2.0.a1
pyrus_communis	pycom02g06360 pycom09g10970 pycom15g18390
rosa_chinensis	RchiOBHm_Chr2g0093411 RchiOBHm_Chr2g0143231
rosa_laevigata	RLG00000016396 RLG00000020017 RLG00000020021
rosa_multiflora	Rmu_co8519777.1_g000001 Rmu_sc0003950.1_g000003
rosa_roxburghii	Rroxscaffold_2G00102000 Rroxscaffold_2G00148130
rosa_rugosa	Rorug02G0035200 Rorug02G0035200 Rorug02G0035300 Rorug02G0035400 Rorug02G0035500 Rorug02G0035600 Rorug02G0379700
rosa_samantha	Rh2AG081600 Rh2AG432500 Rh2BG082900 Rh2BG441100 Rh2CG084900 Rh2CG418300 Rh2DG080600 Rh2DG451200
rosa_wichuraiana	Rw2G006500 Rw2G035310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	85
AccB7I	CCANNNNNTGG	3 cut(s)	65, 124, 281
AclWI	GGATC	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	135
AfiI	CCNNNNNNNGG	4 cut(s)	65, 124, 163, 281
AgsI	TTSAA	2 cut(s)	249, 317
AjiI	CACGTC	1 cut(s)	201
AluBI	AGCT	5 cut(s)	122, 208, 218, 287, 333
AluI	AGCT	5 cut(s)	122, 208, 218, 287, 333
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	2 cut(s)	71, 107
AlwI	GGATC	1 cut(s)	76
AoxI	GGCC	2 cut(s)	195, 242
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	1 cut(s)	135
ArsI	GACNNNNNNTTYG	2 cut(s)	106, 138
Asp700I	GAANNNNTTC	1 cut(s)	136
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	87
BanII	GRGCYC	1 cut(s)	289
BauI	CACGAG	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	138
BccI	CCATC	2 cut(s)	231, 283
BciVI	GTATCC	1 cut(s)	183
BcnI	CCSGG	1 cut(s)	164
BcoDI	GTCTC	2 cut(s)	71, 107
BfmI	CTRYAG	1 cut(s)	72
BfuI	GTATCC	1 cut(s)	183
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
Bme1390I	CCNGG	1 cut(s)	164
BmgBI	CACGTC	1 cut(s)	201
BmrFI	CCNGG	1 cut(s)	164
BpmI	CTGGAG	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	313
BpuMI	CCSGG	1 cut(s)	164
BsaI	GGTCTC	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	4 cut(s)	65, 124, 163, 281
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	4 cut(s)	65, 124, 163, 281
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	138
BseYI	CCCAGC	1 cut(s)	204
BshFI	GGCC	2 cut(s)	197, 244
BsiHKAI	GWGCWC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	164
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	4 cut(s)	65, 124, 163, 281
BsmAI	GTCTC	2 cut(s)	71, 107
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	2 cut(s)	197, 244
Bso31I	GGTCTC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp143I	GATC	1 cut(s)	68
BspANI	GGCC	2 cut(s)	197, 244
BspMAI	CTGCAG	1 cut(s)	76
BspPI	GGATC	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	107
BssMI	GATC	1 cut(s)	68
BssSI	CACGAG	1 cut(s)	228
Bst2BI	CACGAG	1 cut(s)	228
BstC8I	GCNNGC	3 cut(s)	191, 195, 309
BstF5I	GGATG	1 cut(s)	223
BstKTI	GATC	1 cut(s)	71
BstMAI	GTCTC	2 cut(s)	71, 107
BstMBI	GATC	1 cut(s)	68
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstNSI	RCATGY	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	162
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
BsuI	GTATCC	1 cut(s)	183
BsuRI	GGCC	2 cut(s)	197, 244
BtrI	CACGTC	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	223
Cac8I	GCNNGC	3 cut(s)	191, 195, 309
CviAII	CATG	2 cut(s)	65, 308
CviJI	RGCY	9 cut(s)	122, 128, 151, 197, 208, 218, 244, 287, 333
CviKI_1	RGCY	9 cut(s)	122, 128, 151, 197, 208, 218, 244, 287, 333
DpnI	GATC	1 cut(s)	70
DpnII	GATC	1 cut(s)	68
DrdI	GACNNNNNNGTC	1 cut(s)	85
DseDI	GACNNNNNNGTC	1 cut(s)	85
Ecl136II	GAGCTC	1 cut(s)	287
Eco147I	AGGCCT	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	289
Eco31I	GGTCTC	1 cut(s)	107
Eco53kI	GAGCTC	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	287
EcoT38I	GRGCYC	1 cut(s)	289
FaeI	CATG	2 cut(s)	68, 311
FaiI	YATR	4 cut(s)	29, 66, 272, 309
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	2 cut(s)	64, 307
Fnu4HI	GCNGC	1 cut(s)	152
FokI	GGATG	1 cut(s)	210
FriOI	GRGCYC	1 cut(s)	289
Fsp4HI	GCNGC	1 cut(s)	152
GluI	GCNGC	1 cut(s)	152
GsaI	CCCAGC	1 cut(s)	208
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	197, 244
HapII	CCGG	1 cut(s)	164
Hin1II	CATG	2 cut(s)	68, 311
HindIII	AAGCTT	1 cut(s)	120
HinfI	GANTC	3 cut(s)	16, 43, 233
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	1 cut(s)	87
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	3 cut(s)	230, 282, 314
HpyAV	CCTTC	2 cut(s)	255, 276
HpyCH4IV	ACGT	1 cut(s)	200
HpyCH4V	TGCA	5 cut(s)	31, 74, 257, 293, 307
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpySE526I	ACGT	1 cut(s)	200
Hsp92II	CATG	2 cut(s)	68, 311
Kzo9I	GATC	1 cut(s)	68
LmnI	GCTCC	2 cut(s)	284, 292
LpnPI	CCDG	9 cut(s)	32, 114, 133, 177, 179, 203, 218, 267, 303
Lsp1109I	GCAGC	1 cut(s)	138
MaeII	ACGT	1 cut(s)	200
MalI	GATC	1 cut(s)	70
MboI	GATC	1 cut(s)	68
MboII	GAAGA	1 cut(s)	270
MflI	RGATCY	1 cut(s)	68
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	3 cut(s)	91, 135, 210
MnlI	CCTC	3 cut(s)	167, 170, 237
MroXI	GAANNNNTTC	1 cut(s)	136
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	228
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	28
NciI	CCSGG	1 cut(s)	164
NdeII	GATC	1 cut(s)	68
NlaIII	CATG	2 cut(s)	68, 311
NspI	RCATGY	1 cut(s)	311
PaeI	GCATGC	1 cut(s)	311
PceI	AGGCCT	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	136
PfeI	GAWTC	3 cut(s)	16, 43, 233
PflMI	CCANNNNNTGG	3 cut(s)	65, 124, 281
PfoI	TCCNGGA	1 cut(s)	162
PkrI	GCNGC	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	289
PspFI	CCCAGC	1 cut(s)	204
PstI	CTGCAG	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	68
RseI	CAYNNNNRTG	1 cut(s)	228
SacI	GAGCTC	1 cut(s)	289
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	9 cut(s)	124, 173, 185, 203, 210, 220, 268, 289, 335
SfcI	CTRYAG	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	328
SmoI	CTYRAG	1 cut(s)	328
SphI	GCATGC	1 cut(s)	311
Sse9I	AATT	3 cut(s)	91, 135, 210
SseBI	AGGCCT	1 cut(s)	244
SstI	GAGCTC	1 cut(s)	289
StuI	AGGCCT	1 cut(s)	244
StyD4I	CCNGG	1 cut(s)	162
TaiI	ACGT	1 cut(s)	203
TasI	AATT	3 cut(s)	91, 135, 210
TfiI	GAWTC	3 cut(s)	16, 43, 233
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseI	GCWGC	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	53
Van91I	CCANNNNNTGG	3 cut(s)	65, 124, 281
XapI	RAATTY	1 cut(s)	135
XceI	RCATGY	1 cut(s)	311
XcmI	CCANNNNNNNNNTGG	1 cut(s)	125
XmnI	GAANNNNTTC	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.