Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001069

Physical Location & Seq

Genomic Coordinates Reverse (-)

58259524 .. 58264436

Gene Structure 4913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G035310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2601 bp

ATGGGGAGGCAACTGAATCTGCTTCTTATGCAAATGTGCTTGATTCTGGGTGTTTTGCCATTTCATGGATCTGCAGACCATGCTGTCTCTCCTAATTCCCCCCTCAGCTTTGGCGGGAAAAAACACAGAAATCTGGTAGCTCCGCCTCCTGGAAAAGTATCCCACCACCTATTGCCAGCAGGCCATGCCACAGCTAAAGCCATCCATCCTCATGCTTCTGTAAGGCCTTCAAGTATTGCACTTCCACCTTCTATGTCATCTTCTGGAGGTCCTGCAAAGGAATGGGTGCATTCTCCTGAACATTCCCCCTCAAGCTCACGTCACAAAAATCATCATGCAAACAAAAAGTTCCACAGCTCTGCTCCAGAACCAACTTACTCGATTCCTTCCCACACTAACAGTCAACAAGGCCCTTCAGTCTCCCCATTTCGATCTCTTTCGCCTTCTTCAAGGAGTTGGACTGCACCTGCACCATCACCATCACCAACTACTTTTGAAGGCCACTATAACATGCCCATCTTTCCACGTGCAATTTCTCCCATAGATTCTTCCTTGAAGAGGACAAAGTCCCCACCACCATCACCAATTTTGGCACTACCACCTCCACCTCCCAATGAAGATTGTTCGTCAATCACATGCACGGATCCATTAACATATACTCCTCCAGGATCAACATGTGGTTGTGTGCAGCCAATTGAAGTTAAACTCCAACTAGATGTTGCAATATACACATTCTTCCCTTCAGTTTCAAAGCTGGCTGAGGAAATCGCAGACAGTGTTGCACTAAACCATAGCCAAGTTCGCATAATGGGAGCAGATGCATCTAGTCAGCAGCTAGAGAAAACTTCCGTCCTCGTTAACTTGGTACCTATAGGACTAACATTTGATGGCACTACTGCATTTCAAATCTATGACAAATTCTGGCGCAGACAGGTTTCCATAAATGCTTCTCTCTTTGGTGATTATGAAGTATTGAATGTTCACTATCCAGGTCTTCCACCTTCTCCCCCTTCAGCACCTTCAGCCATTTCTACTATAGATGACGGGCCATACATGGGCCAAGACAACAATGGAAGGGTAATAAAACCTATACCAGTTAACGTGCCAAGAAAAAGAAATGATGGAATCAAAGGAAGTATGCTTGCTGTGATCGTTCTATCATCTTTCACAGCCTTTCTTTTATGTGTGGGGTTTGTCTGGCTTTTGTTACTGAAATGTCGATCTCACTCCCATAAGCCTGAACATTTTCCACAAGCTTTGACATCGTCCCCTACAAAACTCACAGGGGATCCCAGGTCAGTGATGTTTGGAAGCACACATGGTTCCAGATCAATGTCTTTTAGTTCTGGCACACTAACCTATACTGGATCTGCGAAGACCTTTACTCTGCATGACATGGAGAGAGCCACTAATAATTTTGATGCTTCAAGAATACTTGGAGAAGGTGGCTTTGGGCTTGTTTACAGTGCTACTTTAGATGATGGACGAGAGGTGGCTGTGAAGGTTCTGAAGAGAGATGATCATCATGGTGGCCGCGAATTCTTAGCAGAAGTTGAGATGCTTGGCCGTCTTCACCACAGAAATTTGGTCAAATTAATTGGTATCTGCACAGAGGGCCATACTCGTTGCCTCGTTTACGAACTTGTTCCAAATGGAAGTGTTGAATCCCATTTACATGGTGTTGACAAGGAAACTGATCCACTTGATTGGGATGCCAGAATAAAGATTGCCCTTGGTGCAGCTCGGGGCTTAGCTTATCTCCACGAAGACTCAAATCCTCGAGTTATACATCGTGACTTCAAGGCCAGCAACATCTTACTGGAATATGATTTTACACCCAAGGTTTCGGATTTTGGACTGGCTAGAGCGGCGCTGGAGGAGGGAAAAAGACATATTTCAACACATGTTATGGGAACTTTTGGTTACTTGGCTCCAGAGTATGCAATGACTGGTCATCTTCTAGTAAAAAGTGATGTTTACAGCTATGGTGTAGTCCTTCTTGAACTCCTGACAGGAAGAAAGCCGGTGGATCTGTCACAACCTTCAGGTCAAGAGAACCTCGTTGCTTGGGCTCGTCCTCTCCTCACCAGCAGAGAGGGTCTAGAATCAATAATAGACCCGGCGTTGAAATCTGATATGATCACATGGGACAGTGTAACCAAGGTAGCAGCAATTGCTTCAATGTGTATACAACCAGAAGTATCTCACCGCCCGTTCATGGGAGAGGTTGTTCAGGCCTTAAAGCTTGTATGCAATGAGTTCAGAGAAACAAAGGAACTTGCAGGTTCAACAAGTTGTGGCCAAGACGATGATGATCTCTGCATTCATACAGATAGTGGTAATCTTGAAGTGGCAGAATCACAGCTTCAGATGCCTGTATTCGGGGCTAGCCATGACACTAAGATACCCTCAACGTCAGATTTGTTGAGTGCAAGTGTGGGATTTGAGGTTGAGGGGCAGGAAGTTGGATCTTTTAGGAGGTACTCTAGTTCAGGGCCTTTGAGGACTGGTAGGAGAAGGCAATTTTGGCAAAGACTAAGGAGTTTGTCTAGAGGAAGTATGAGTGAACATGGATCTTCATTGAAATTGTGGCCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

866

Amino Acids

94.19

Weight (kDa)

7.47

Isoelectric Point (pI)

53.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALE2_N	PF23180	214 - 333	3.6e-55	Receptor-like PK ALE2 N-terminal domain
Pkinase	PF00069	475 - 744	8.9e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	476 - 746	2.6e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56890
fragaria_vesca	FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370
malus_domestica	MD02G1079800.v1.1 MD09G1193100.v1.1 MD15G1207500.v1.1
prunus_persica	Prupe.3G049500_v2.0.a1 Prupe.7G209300_v2.0.a1 Prupe.7G209300_v2.0.a1
pyrus_communis	pycom02g06360 pycom09g10970 pycom15g18390
rosa_chinensis	RchiOBHm_Chr2g0093411 RchiOBHm_Chr2g0143231
rosa_laevigata	RLG00000016396 RLG00000020017 RLG00000020021
rosa_multiflora	Rmu_co8519777.1_g000001 Rmu_sc0003950.1_g000003
rosa_roxburghii	Rroxscaffold_2G00102000 Rroxscaffold_2G00148130
rosa_rugosa	Rorug02G0035200 Rorug02G0035200 Rorug02G0035300 Rorug02G0035400 Rorug02G0035500 Rorug02G0035600 Rorug02G0379700
rosa_samantha	Rh2AG081600 Rh2AG432500 Rh2BG082900 Rh2BG441100 Rh2CG084900 Rh2CG418300 Rh2DG080600 Rh2DG451200
rosa_wichuraiana	Rw2G006500 Rw2G035310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	475
AasI	GACNNNNNNGTC	1 cut(s)	83
Acc36I	ACCTGC	2 cut(s)	475, 2273
Acc65I	GGTACC	1 cut(s)	865
AccB1I	GGYRCC	1 cut(s)	865
AccB7I	CCANNNNNTGG	1 cut(s)	65
AccBSI	CCGCTC	1 cut(s)	1868
AccI	GTMKAC	1 cut(s)	2188
AccII	CGCG	1 cut(s)	1536
AciI	CCGC	5 cut(s)	114, 143, 1534, 1868, 2209
AcoI	YGGCCR	4 cut(s)	1531, 1564, 2299, 2591
AcsI	RAATTY	3 cut(s)	917, 1538, 1582
AcuI	CTGAAG	7 cut(s)	399, 726, 996, 1005, 1529, 2028, 2351
AcvI	CACGTG	1 cut(s)	527
AfaI	GTAC	2 cut(s)	867, 2483
AfiI	CCNNNNNNNGG	7 cut(s)	65, 149, 558, 1055, 2218, 2219, 2381
AflIII	ACRYGT	2 cut(s)	674, 1903
AjiI	CACGTC	1 cut(s)	320
AjnI	CCWGG	4 cut(s)	148, 664, 988, 1292
AjuI	GAANNNNNNNTTGG	4 cut(s)	1434, 1466, 2509, 2541
AloI	GAACNNNNNNTCC	2 cut(s)	2214, 2246
Alw26I	GTCTC	2 cut(s)	91, 424
Ama87I	CYCGRG	2 cut(s)	1743, 1779
ApeKI	GCWGC	4 cut(s)	688, 832, 1739, 2168
ApoI	RAATTY	3 cut(s)	917, 1538, 1582
AseI	ATTAAT	1 cut(s)	1595
Asp700I	GAANNNNTTC	2 cut(s)	1245, 1644
Asp718I	GGTACC	1 cut(s)	865
AspLEI	GCGC	2 cut(s)	927, 1873
AspS9I	GGNCC	6 cut(s)	269, 410, 1046, 1057, 1615, 2495
AsuC2I	CCSGG	1 cut(s)	2120
AsuHPI	GGTGA	7 cut(s)	468, 474, 573, 971, 1565, 2077, 2198
AsuNHI	GCTAGC	1 cut(s)	2387
AvaI	CYCGRG	2 cut(s)	1743, 1779
AvaII	GGWCC	1 cut(s)	269
BaeI	ACNNNNGTAYC	2 cut(s)	2473, 2506
BalI	TGGCCA	2 cut(s)	2301, 2593
BamHI	GGATCC	2 cut(s)	643, 1288
BanI	GGYRCC	1 cut(s)	865
BanII	GRGCYC	1 cut(s)	2074
BbrPI	CACGTG	1 cut(s)	527
BbsI	GAAGAC	4 cut(s)	986, 1382, 1562, 1773
BbvCI	CCTCAGC	2 cut(s)	104, 759
BbvI	GCAGC	4 cut(s)	700, 844, 1751, 2180
BccI	CCATC	9 cut(s)	209, 213, 481, 487, 524, 586, 881, 1115, 1475
BceAI	ACGGC	1 cut(s)	1551
BciT130I	CCWGG	4 cut(s)	150, 666, 990, 1294
BciVI	GTATCC	1 cut(s)	169
BclI	TGATCA	2 cut(s)	1519, 2139
BcnI	CCSGG	1 cut(s)	2120
BcoDI	GTCTC	2 cut(s)	91, 424
BfaI	CTAG	9 cut(s)	713, 825, 836, 1863, 1961, 2102, 2388, 2487, 2550
BfmI	CTRYAG	3 cut(s)	72, 870, 1035
BfoI	RGCGCY	1 cut(s)	1874
BfuAI	ACCTGC	2 cut(s)	475, 2273
BfuI	GTATCC	1 cut(s)	169
BisI	GCNGC	6 cut(s)	689, 833, 1534, 1740, 1869, 2169
BlpI	GCTNAGC	1 cut(s)	1750
BlsI	GCNGC	6 cut(s)	690, 834, 1535, 1741, 1870, 2170
Bme1390I	CCNGG	5 cut(s)	150, 666, 990, 1294, 2120
Bme18I	GGWCC	1 cut(s)	269
BmeT110I	CYCGRG	2 cut(s)	1743, 1779
BmgBI	CACGTC	1 cut(s)	320
BmgT120I	GGNCC	6 cut(s)	269, 410, 1046, 1057, 1615, 2495
BmiI	GGNNCC	5 cut(s)	645, 867, 1290, 1324, 1932
BmrFI	CCNGG	5 cut(s)	150, 666, 990, 1294, 2120
BmsI	GCATC	6 cut(s)	808, 830, 1411, 1548, 1702, 2361
BmtI	GCTAGC	1 cut(s)	2391
BpiI	GAAGAC	4 cut(s)	986, 1382, 1562, 1773
BpmI	CTGGAG	5 cut(s)	285, 348, 648, 1895, 1917
Bpu10I	CCTNAGC	2 cut(s)	104, 759
Bpu1102I	GCTNAGC	1 cut(s)	1750
BpuEI	CTTGAG	1 cut(s)	295
BpuMI	CCSGG	1 cut(s)	2120
BsaAI	YACGTR	1 cut(s)	527
BsaBI	GATNNNNATC	2 cut(s)	1521, 2313
BsaJI	CCNNGG	4 cut(s)	1292, 1732, 1839, 2160
BsaXI	ACNNNNNCTCC	4 cut(s)	643, 673, 2214, 2244
Bsc4I	CCNNNNNNNGG	7 cut(s)	65, 149, 558, 1055, 2218, 2219, 2381
Bse118I	RCCGGY	1 cut(s)	2023
Bse1I	ACTGG	6 cut(s)	1094, 1369, 1824, 1863, 1954, 2512
Bse3DI	GCAATG	2 cut(s)	1950, 2260
Bse8I	GATNNNNATC	2 cut(s)	1521, 2313
BseBI	CCWGG	4 cut(s)	150, 666, 990, 1294
BseDI	CCNNGG	4 cut(s)	1292, 1732, 1839, 2160
BseGI	GGATG	3 cut(s)	201, 205, 1717
BseJI	GATNNNNATC	2 cut(s)	1521, 2313
BseLI	CCNNNNNNNGG	7 cut(s)	65, 149, 558, 1055, 2218, 2219, 2381
BseMI	GCAATG	2 cut(s)	1950, 2260
BseMII	CTCAG	2 cut(s)	118, 750
BseNI	ACTGG	6 cut(s)	1094, 1369, 1824, 1863, 1954, 2512
BseRI	GAGGAG	3 cut(s)	651, 1892, 2072
BseXI	GCAGC	4 cut(s)	700, 844, 1751, 2180
BsgI	GTGCAG	5 cut(s)	447, 453, 707, 1591, 1758
Bsh1236I	CGCG	1 cut(s)	1536
BshNI	GGYRCC	1 cut(s)	865
BsiHKCI	CYCGRG	2 cut(s)	1743, 1779
BsiSI	CCGG	2 cut(s)	2024, 2120
BslFI	GGGAC	3 cut(s)	553, 1252, 2162
BslI	CCNNNNNNNGG	7 cut(s)	65, 149, 558, 1055, 2218, 2219, 2381
BsmAI	GTCTC	2 cut(s)	91, 424
BsmFI	GGGAC	3 cut(s)	553, 1252, 2162
BsmI	GAATGC	2 cut(s)	289, 2322
BsoBI	CYCGRG	2 cut(s)	1743, 1779
Bsp1286I	GDGCHC	1 cut(s)	2074
Bsp1720I	GCTNAGC	1 cut(s)	1750
BspACI	CCGC	5 cut(s)	114, 143, 1534, 1868, 2209
BspCNI	CTCAG	2 cut(s)	117, 751
BspFNI	CGCG	1 cut(s)	1536
BspLI	GGNNCC	5 cut(s)	645, 867, 1290, 1324, 1932
BspMAI	CTGCAG	1 cut(s)	76
BspMI	ACCTGC	2 cut(s)	475, 2273
BspOI	GCTAGC	1 cut(s)	2391
BspT107I	GGYRCC	1 cut(s)	865
BsrBI	CCGCTC	1 cut(s)	1868
BsrDI	GCAATG	2 cut(s)	1950, 2260
BsrFI	RCCGGY	1 cut(s)	2023
BsrI	ACTGG	6 cut(s)	1094, 1369, 1824, 1863, 1954, 2512
BssAI	RCCGGY	1 cut(s)	2023
BssECI	CCNNGG	4 cut(s)	1292, 1732, 1839, 2160
BssNAI	GTATAC	1 cut(s)	2189
BssT1I	CCWWGG	3 cut(s)	1732, 1839, 2160
Bst1107I	GTATAC	1 cut(s)	2189
Bst2UI	CCWGG	4 cut(s)	150, 666, 990, 1294
Bst4CI	ACNGT	4 cut(s)	401, 776, 1466, 2153
Bst6I	CTCTTC	2 cut(s)	551, 1505
BstAPI	GCANNNNNTGC	3 cut(s)	80, 185, 2174
BstBAI	YACGTR	1 cut(s)	527
BstC8I	GCNNGC	6 cut(s)	177, 181, 756, 1143, 1807, 2389
BstDEI	CTNAG	6 cut(s)	104, 759, 1543, 1750, 2400, 2537
BstENI	CCTNNNNNAGG	1 cut(s)	556
BstF5I	GGATG	3 cut(s)	201, 205, 1717
BstFNI	CGCG	1 cut(s)	1536
BstH2I	RGCGCY	1 cut(s)	1874
BstHHI	GCGC	2 cut(s)	927, 1873
BstMAI	GTCTC	2 cut(s)	91, 424
BstNI	CCWGG	4 cut(s)	150, 666, 990, 1294
BstNSI	RCATGY	4 cut(s)	514, 639, 678, 1907
BstSCI	CCNGG	5 cut(s)	148, 664, 988, 1292, 2118
BstSFI	CTRYAG	3 cut(s)	72, 870, 1035
BstUI	CGCG	1 cut(s)	1536
BstV1I	GCAGC	4 cut(s)	700, 844, 1751, 2180
BstV2I	GAAGAC	4 cut(s)	986, 1382, 1562, 1773
BstX2I	RGATCY	7 cut(s)	68, 643, 1288, 1367, 2029, 2468, 2573
BstXI	CCANNNNNNTGG	2 cut(s)	1676, 1707
BstYI	RGATCY	7 cut(s)	68, 643, 1288, 1367, 2029, 2468, 2573
BstZ17I	GTATAC	1 cut(s)	2189
BsuI	GTATCC	1 cut(s)	169
BtrI	CACGTC	1 cut(s)	320
BtsCI	GGATG	3 cut(s)	201, 205, 1717
BtsIMutI	CAGTG	4 cut(s)	781, 1305, 1471, 2158
BveI	ACCTGC	2 cut(s)	475, 2273
Cac8I	GCNNGC	6 cut(s)	177, 181, 756, 1143, 1807, 2389
CfoI	GCGC	2 cut(s)	927, 1873
Cfr10I	RCCGGY	1 cut(s)	2023
Cfr13I	GGNCC	6 cut(s)	269, 410, 1046, 1057, 1615, 2495
Csp6I	GTAC	2 cut(s)	866, 2482
CspCI	CAANNNNNGTGG	2 cut(s)	1239, 1274
CviQI	GTAC	2 cut(s)	866, 2482
DdeI	CTNAG	6 cut(s)	104, 759, 1543, 1750, 2400, 2537
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
EaeI	YGGCCR	4 cut(s)	1531, 1564, 2299, 2591
Eam1104I	CTCTTC	2 cut(s)	551, 1505
EarI	CTCTTC	2 cut(s)	551, 1505
EciI	GGCGGA	1 cut(s)	132
Eco130I	CCWWGG	3 cut(s)	1732, 1839, 2160
Eco147I	AGGCCT	2 cut(s)	226, 2237
Eco24I	GRGCYC	1 cut(s)	2074
Eco47I	GGWCC	1 cut(s)	269
Eco57I	CTGAAG	7 cut(s)	399, 726, 996, 1005, 1529, 2028, 2351
Eco72I	CACGTG	1 cut(s)	527
Eco88I	CYCGRG	2 cut(s)	1743, 1779
EcoNI	CCTNNNNNAGG	1 cut(s)	556
EcoO109I	RGGNCCY	3 cut(s)	269, 410, 2495
EcoRI	GAATTC	1 cut(s)	1538
EcoRII	CCWGG	4 cut(s)	148, 664, 988, 1292
EcoT14I	CCWWGG	3 cut(s)	1732, 1839, 2160
EcoT22I	ATGCAT	1 cut(s)	823
EcoT38I	GRGCYC	1 cut(s)	2074
ErhI	CCWWGG	3 cut(s)	1732, 1839, 2160
FaqI	GGGAC	3 cut(s)	553, 1252, 2162
FauI	CCCGC	1 cut(s)	107
FbaI	TGATCA	2 cut(s)	1519, 2139
FblI	GTMKAC	1 cut(s)	2188
Fnu4HI	GCNGC	6 cut(s)	689, 833, 1534, 1740, 1869, 2169
FokI	GGATG	3 cut(s)	188, 192, 1724
FriOI	GRGCYC	1 cut(s)	2074
Fsp4HI	GCNGC	6 cut(s)	689, 833, 1534, 1740, 1869, 2169
FspBI	CTAG	9 cut(s)	713, 825, 836, 1863, 1961, 2102, 2388, 2487, 2550
GlaI	GCGC	2 cut(s)	926, 1872
GluI	GCNGC	6 cut(s)	689, 833, 1534, 1740, 1869, 2169
GsuI	CTGGAG	5 cut(s)	285, 348, 648, 1895, 1917
HaeII	RGCGCY	1 cut(s)	1874
HapII	CCGG	2 cut(s)	2024, 2120
HhaI	GCGC	2 cut(s)	927, 1873
Hin6I	GCGC	2 cut(s)	925, 1871
HinP1I	GCGC	2 cut(s)	925, 1871
HincII	GTYRAC	4 cut(s)	404, 859, 1099, 1684
HindII	GTYRAC	4 cut(s)	404, 859, 1099, 1684
HindIII	AAGCTT	2 cut(s)	1254, 2243
HinfI	GANTC	9 cut(s)	16, 43, 382, 545, 1125, 1664, 1769, 2105, 2357
HpaI	GTTAAC	2 cut(s)	859, 1099
HpaII	CCGG	2 cut(s)	2024, 2120
HphI	GGTGA	7 cut(s)	468, 474, 573, 971, 1565, 2077, 2198
Hpy188I	TCNGA	6 cut(s)	1509, 1849, 2134, 2264, 2370, 2419
HpyCH4III	ACNGT	4 cut(s)	401, 776, 1466, 2153
HpyCH4IV	ACGT	4 cut(s)	319, 526, 1101, 2414
HpyF3I	CTNAG	6 cut(s)	104, 759, 1543, 1750, 2400, 2537
HpySE526I	ACGT	4 cut(s)	319, 526, 1101, 2414
HspAI	GCGC	2 cut(s)	925, 1871
KpnI	GGTACC	1 cut(s)	869
Ksp22I	TGATCA	2 cut(s)	1519, 2139
KspAI	GTTAAC	2 cut(s)	859, 1099
LmnI	GCTCC	4 cut(s)	145, 367, 812, 1936
Lsp1109I	GCAGC	4 cut(s)	700, 844, 1751, 2180
LweI	GCATC	6 cut(s)	808, 830, 1411, 1548, 1702, 2361
MaeI	CTAG	9 cut(s)	713, 825, 836, 1863, 1961, 2102, 2388, 2487, 2550
MaeII	ACGT	4 cut(s)	319, 526, 1101, 2414
MaeIII	GTNAC	6 cut(s)	320, 1206, 1793, 1922, 2034, 2155
MbiI	CCGCTC	1 cut(s)	1868
MfeI	CAATTG	2 cut(s)	693, 2172
MflI	RGATCY	7 cut(s)	68, 643, 1288, 1367, 2029, 2468, 2573
MhlI	GDGCHC	1 cut(s)	2074
MlsI	TGGCCA	2 cut(s)	2301, 2593
MluNI	TGGCCA	2 cut(s)	2301, 2593
MlyI	GAGTC	1 cut(s)	1763
MmeI	TCCRAC	3 cut(s)	437, 733, 2446
Mox20I	TGGCCA	2 cut(s)	2301, 2593
Mph1103I	ATGCAT	1 cut(s)	823
MroXI	GAANNNNTTC	2 cut(s)	1245, 1644
MscI	TGGCCA	2 cut(s)	2301, 2593
MseI	TTAA	6 cut(s)	650, 702, 858, 1098, 1595, 2240
MslI	CAYNNNNRTG	3 cut(s)	210, 1527, 1674
Msp20I	TGGCCA	2 cut(s)	2301, 2593
MspI	CCGG	2 cut(s)	2024, 2120
MspR9I	CCNGG	5 cut(s)	150, 666, 990, 1294, 2120
MunI	CAATTG	2 cut(s)	693, 2172
Mva1269I	GAATGC	2 cut(s)	289, 2322
MvaI	CCWGG	4 cut(s)	150, 666, 990, 1294
MvnI	CGCG	1 cut(s)	1536
NciI	CCSGG	1 cut(s)	2120
NheI	GCTAGC	1 cut(s)	2387
NlaIV	GGNNCC	5 cut(s)	645, 867, 1290, 1324, 1932
NmuCI	GTSAC	3 cut(s)	320, 1793, 2034
NsiI	ATGCAT	1 cut(s)	823
NspI	RCATGY	4 cut(s)	514, 639, 678, 1907
PaeR7I	CTCGAG	1 cut(s)	1779
PaqCI	CACCTGC	1 cut(s)	475
PceI	AGGCCT	2 cut(s)	226, 2237
PciI	ACATGT	2 cut(s)	674, 1903
PctI	GAATGC	2 cut(s)	289, 2322
PdmI	GAANNNNTTC	2 cut(s)	1245, 1644
PfeI	GAWTC	8 cut(s)	16, 43, 382, 545, 1125, 1664, 2105, 2357
PflFI	GACNNNGTC	2 cut(s)	565, 1264
PflMI	CCANNNNNTGG	1 cut(s)	65
PfoI	TCCNGGA	2 cut(s)	148, 664
PkrI	GCNGC	6 cut(s)	690, 834, 1535, 1741, 1870, 2170
PleI	GAGTC	1 cut(s)	1763
PmaCI	CACGTG	1 cut(s)	527
PmlI	CACGTG	1 cut(s)	527
PpsI	GAGTC	1 cut(s)	1763
Ppu21I	YACGTR	1 cut(s)	527
PpuMI	RGGWCCY	1 cut(s)	269
PscI	ACATGT	2 cut(s)	674, 1903
PshBI	ATTAAT	1 cut(s)	1595
Psp5II	RGGWCCY	1 cut(s)	269
Psp6I	CCWGG	4 cut(s)	148, 664, 988, 1292
PspCI	CACGTG	1 cut(s)	527
PspGI	CCWGG	4 cut(s)	148, 664, 988, 1292
PspN4I	GGNNCC	5 cut(s)	645, 867, 1290, 1324, 1932
PspPI	GGNCC	6 cut(s)	269, 410, 1046, 1057, 1615, 2495
PspPPI	RGGWCCY	1 cut(s)	269
PspXI	VCTCGAGB	1 cut(s)	1779
PsrI	GAACNNNNNNTAC	2 cut(s)	963, 995
PstI	CTGCAG	1 cut(s)	76
PsuI	RGATCY	7 cut(s)	68, 643, 1288, 1367, 2029, 2468, 2573
PsyI	GACNNNGTC	2 cut(s)	565, 1264
RsaI	GTAC	2 cut(s)	867, 2483
RsaNI	GTAC	2 cut(s)	866, 2482
RseI	CAYNNNNRTG	3 cut(s)	210, 1527, 1674
SaqAI	TTAA	6 cut(s)	650, 702, 858, 1098, 1595, 2240
SatI	GCNGC	6 cut(s)	689, 833, 1534, 1740, 1869, 2169
Sau96I	GGNCC	6 cut(s)	269, 410, 1046, 1057, 1615, 2495
SchI	GAGTC	1 cut(s)	1763
ScrFI	CCNGG	5 cut(s)	150, 666, 990, 1294, 2120
SduI	GDGCHC	1 cut(s)	2074
SfaNI	GCATC	6 cut(s)	808, 830, 1411, 1548, 1702, 2361
SfcI	CTRYAG	3 cut(s)	72, 870, 1035
Sfr274I	CTCGAG	1 cut(s)	1779
SinI	GGWCC	1 cut(s)	269
SlaI	CTCGAG	1 cut(s)	1779
SmiMI	CAYNNNNRTG	3 cut(s)	210, 1527, 1674
SmlI	CTYRAG	2 cut(s)	310, 1779
SmoI	CTYRAG	2 cut(s)	310, 1779
SseBI	AGGCCT	2 cut(s)	226, 2237
SsiI	CCGC	5 cut(s)	114, 143, 1534, 1868, 2209
SspMI	CTAG	9 cut(s)	713, 825, 836, 1863, 1961, 2102, 2388, 2487, 2550
StuI	AGGCCT	2 cut(s)	226, 2237
StyD4I	CCNGG	5 cut(s)	148, 664, 988, 1292, 2118
StyI	CCWWGG	3 cut(s)	1732, 1839, 2160
TaaI	ACNGT	4 cut(s)	401, 776, 1466, 2153
TaiI	ACGT	4 cut(s)	322, 529, 1104, 2417
TaqI	TCGA	4 cut(s)	380, 430, 1219, 1780
TauI	GCSGC	2 cut(s)	1536, 1871
TfiI	GAWTC	8 cut(s)	16, 43, 382, 545, 1125, 1664, 2105, 2357
Tru1I	TTAA	6 cut(s)	650, 702, 858, 1098, 1595, 2240
Tru9I	TTAA	6 cut(s)	650, 702, 858, 1098, 1595, 2240
TscAI	CASTG	4 cut(s)	781, 1305, 1471, 2158
TseFI	GTSAC	3 cut(s)	320, 1793, 2034
TseI	GCWGC	4 cut(s)	688, 832, 1739, 2168
Tsp45I	GTSAC	3 cut(s)	320, 1793, 2034
TspDTI	ATGAA	6 cut(s)	53, 630, 981, 2206, 2315, 2568
TspGWI	ACGGA	2 cut(s)	656, 838
TspRI	CASTG	4 cut(s)	781, 1305, 1471, 2158
Tth111I	GACNNNGTC	2 cut(s)	565, 1264
Van91I	CCANNNNNTGG	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	269
VspI	ATTAAT	1 cut(s)	1595
XagI	CCTNNNNNAGG	1 cut(s)	556
XapI	RAATTY	3 cut(s)	917, 1538, 1582
XbaI	TCTAGA	2 cut(s)	2101, 2549
XceI	RCATGY	4 cut(s)	514, 639, 678, 1907
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1067
XhoI	CTCGAG	1 cut(s)	1779
XmiI	GTMKAC	1 cut(s)	2188
XmnI	GAANNNNTTC	2 cut(s)	1245, 1644
XspI	CTAG	9 cut(s)	713, 825, 836, 1863, 1961, 2102, 2388, 2487, 2550
Zsp2I	ATGCAT	1 cut(s)	823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.