Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001069

Physical Location & Seq

Genomic Coordinates Reverse (-)

2790904 .. 2794554

Gene Structure 3651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0035300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2025 bp

ATGAGCCTGAGGACGATGGCTTGGGCCGAAGCGGTGACCGAGTCCGCCCGGAAGCAAACTCGCCCACTTCCCCCGCCGCGCAACACCACCTACGTGCCTCCGCATCTTCGCTACTCCGGCGGCGGCGGCGGTGGTGGTGGTTACAGCTCCTACGGCCGTGGCTCTAGTGAGTCGACTCAGTACGGTTTTGGTGGTGGTGGTTACAGGGGAGGCGGCCGGAGCGGTCCGGGTCGCGACGGAGGACGAGGAGGTCGTCGTGGTGGTGGTGGTGGCCGGAGTCGAGGTTGGGTACAGACGCCGAGGCCGAACAGGGAGGCGTTTCATGACGTGTCCGGGAAATTCGAGCAGCTGGAAGTGAGGGAGGGGCATGATGTCAGCAATGTGGGTATAAATTTCGATGCTTACGAGGATATTCCGGTGGAGGCGAGCGGCGAGGACGTGCCGGCGCCGGCGAGCACTTTTGGGGAGATTGATTTGGGGGAGTGCTTGAACAACAACATCAAGAGGTGTAGGTACGTGAAGCCGACGCCGGTTCAGCGCCACGCGATTCCGATAGCCATGGCCGGCCGGGACTTGATGGCTTGTGCTCAGACCGGGTCCGGAAAGACGGCGGCTTTTTGCTTCCCCATTATCAGTGGAGTGTTGACTAAGTGTGCGGAGAGGTCTCAGAGTAATGGGGATGGTTGGACTGTGTTTCCCAGAGCTCTCATTTTGTCTCCGACGAGAGAGTTGGCTAGTCAGATATTTGAGGAAGCTGAGAAGTTTGCTTATCAGAGTGGGGCAAAAGTGGCTGTTGTTTATGGTGGAGCGCCGATGGGTCAGCAGCTTCGTGATCTGGAGAGAGGTGTTGACATCCTAGTCGCCACTCCAGGGCGCTTAGTGGACATGATTGAAAGGTCACGAGTTTCACTCAAGATGATCAAATACTTGGCACTAGATGAGGCTGATAGGATGTTGGACATGGGTTTTGAACCTCAAATAAGGAAGATTGTTCAAAGAATGGACATGCCTCCCCCAGGTGCAAGACAAACACTGCTTTTCAGTGCAACATTCCCGCATGAAATACAGAGACTTGCTGCAGATTTCCTCAAGAACTACATTTTTCTGACTGTTGGGAGAGTTGGGTCAAGCACTGATCTTATAGCACAAAAGGTTGAGTTTGTCAGGGATATGGACAAAATACAGCATTTACGTGGTCTTCTTGAGAACCAGAGGGACAATGAAACTCATGGAAAGCTTGCTTTAACCTTGGTGTTTGTTGAGACCAAGAAAGGAGCAAATCAATTGGAAAGCTGGTTGTCCAGGAATGGATTCCCCGCAATAGCAATACATGGTGACAAAGTGCAAATGGAGAGGGAACGAGCTTTGAGATTGTTCAAGTGTGGCACAACTCCAATACTGGTGGCAACAGATGTTGCTTCACGAGGTTTAGATATCCCTCATGTTGCCCATGTCATCAATTTTGACTTCCCAAAAAGCATAGATGATTATGTTCACCGGATTGGTCGGACTGGACGTGCTGGTAAATCTGGTCTTGCAACTGCTTTCTTCAGTGAAAAGAACCAGCCTCTTGCAAAGGCACTAGTGGAGTTAATGAAGGAATCAAAGCAGGAGGTTCCTAATTGGCTTAATGATTATGCTGAACAGTCATTGTCTTATGGTGAAGACCAGAGCCAAAGGTACAGTAGCAGTAACTTTGGTGGATATGACGTCCGTAGGAGTGAGAATTATTATGGTTCAGGCAGTTATGGTTATGGAGATTCTTCTGTGGGTGCGGCTGCTGCTACTTGTAATGATGTTTCTGGTTCATATGCTGCTGGTTCATTTGGCTATGGAGGAAATTATGGGAATTCTTCTGTGGATGAGCCTGCTGCTTCCTACAATGGTACTTATGGGGGTGAAACTGATGCTGCTGGTACTGCTTCCTACAATGGTACTTATGGCGGTGAAACTGATGCTGCTGGTACTGCTGGTTCATCGAGCTTTGGAAATTATGAAAATATTGTTGCTGGTGGGTGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

674

Amino Acids

72.64

Weight (kDa)

6.63

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	176 - 357	2.5e-50	DEAD/DEAH box helicase
Helicase_C	PF00271	393 - 508	3.2e-29	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56890
fragaria_vesca	FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370
malus_domestica	MD02G1079800.v1.1 MD09G1193100.v1.1 MD15G1207500.v1.1
prunus_persica	Prupe.3G049500_v2.0.a1 Prupe.7G209300_v2.0.a1 Prupe.7G209300_v2.0.a1
pyrus_communis	pycom02g06360 pycom09g10970 pycom15g18390
rosa_chinensis	RchiOBHm_Chr2g0093411 RchiOBHm_Chr2g0143231
rosa_laevigata	RLG00000016396 RLG00000020017 RLG00000020021
rosa_multiflora	Rmu_co8519777.1_g000001 Rmu_sc0003950.1_g000003
rosa_roxburghii	Rroxscaffold_2G00102000 Rroxscaffold_2G00148130
rosa_rugosa	Rorug02G0035200 Rorug02G0035200 Rorug02G0035300 Rorug02G0035400 Rorug02G0035500 Rorug02G0035600 Rorug02G0379700
rosa_samantha	Rh2AG081600 Rh2AG432500 Rh2BG082900 Rh2BG441100 Rh2CG084900 Rh2CG418300 Rh2DG080600 Rh2DG451200
rosa_wichuraiana	Rw2G006500 Rw2G035310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	249, 857
AatII	GACGTC	1 cut(s)	1713
AccB1I	GGYRCC	1 cut(s)	445
AccBSI	CCGCTC	2 cut(s)	222, 429
AccI	GTMKAC	1 cut(s)	173
AccII	CGCG	3 cut(s)	79, 234, 545
AccIII	TCCGGA	1 cut(s)	599
AcoI	YGGCCR	5 cut(s)	154, 214, 271, 561, 565
AcsI	RAATTY	3 cut(s)	338, 391, 1849
AcuI	CTGAAG	1 cut(s)	1534
AcyI	GRCGYC	4 cut(s)	296, 446, 527, 1710
AfaI	GTAC	8 cut(s)	182, 291, 515, 1682, 1888, 1918, 1936, 1966
AfiI	CCNNNNNNNGG	2 cut(s)	870, 1016
AflIII	ACRYGT	1 cut(s)	327
AgsI	TTSAA	5 cut(s)	490, 893, 971, 995, 1378
AhlI	ACTAGT	1 cut(s)	1582
AjiI	CACGTC	3 cut(s)	328, 439, 1517
AjnI	CCWGG	3 cut(s)	868, 1015, 1301
AleI	CACNNNNGTG	1 cut(s)	92
AluBI	AGCT	9 cut(s)	147, 349, 704, 755, 826, 1237, 1293, 1364, 1983
AluI	AGCT	9 cut(s)	147, 349, 704, 755, 826, 1237, 1293, 1364, 1983
Alw21I	GWGCWC	3 cut(s)	458, 589, 706
Alw26I	GTCTC	4 cut(s)	669, 720, 1063, 1256
Aor13HI	TCCGGA	1 cut(s)	599
AoxI	GGCC	7 cut(s)	24, 154, 214, 271, 302, 561, 565
ApeKI	GCWGC	9 cut(s)	346, 823, 1076, 1778, 1781, 1814, 1871, 1910, 1958
ApoI	RAATTY	3 cut(s)	338, 391, 1849
ArsI	GACNNNNNNTTYG	2 cut(s)	950, 982
Asp700I	GAANNNNTTC	1 cut(s)	1310
AspLEI	GCGC	5 cut(s)	81, 448, 540, 811, 876
AspS9I	GGNCC	3 cut(s)	24, 224, 597
AsuC2I	CCSGG	5 cut(s)	49, 228, 334, 569, 595
AsuHPI	GGTGA	6 cut(s)	46, 1346, 1487, 1673, 1910, 1958
AvaII	GGWCC	2 cut(s)	224, 597
AxyI	CCTNAGG	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	445
BanII	GRGCYC	1 cut(s)	706
BauI	CACGAG	2 cut(s)	900, 1422
BbsI	GAAGAC	2 cut(s)	1190, 1671
Bbv12I	GWGCWC	3 cut(s)	458, 589, 706
BbvI	GCAGC	9 cut(s)	358, 835, 1063, 1765, 1768, 1801, 1858, 1897, 1945
BccI	CCATC	4 cut(s)	10, 571, 674, 808
BceAI	ACGGC	3 cut(s)	141, 169, 624
BciT130I	CCWGG	3 cut(s)	870, 1017, 1303
BclI	TGATCA	1 cut(s)	918
BcnI	CCSGG	5 cut(s)	49, 228, 334, 569, 595
BcoDI	GTCTC	4 cut(s)	669, 720, 1063, 1256
BcuI	ACTAGT	1 cut(s)	1582
BfaI	CTAG	5 cut(s)	165, 735, 857, 935, 1583
BfmI	CTRYAG	1 cut(s)	1077
BfoI	RGCGCY	4 cut(s)	449, 541, 812, 877
Bme1390I	CCNGG	8 cut(s)	49, 228, 334, 569, 595, 870, 1017, 1303
Bme18I	GGWCC	2 cut(s)	224, 597
BmgBI	CACGTC	3 cut(s)	328, 439, 1517
BmgT120I	GGNCC	3 cut(s)	24, 224, 597
BmiI	GGNNCC	3 cut(s)	447, 598, 1617
BmrFI	CCNGG	8 cut(s)	49, 228, 334, 569, 595, 870, 1017, 1303
BmsI	GCATC	4 cut(s)	112, 388, 1897, 1945
BpiI	GAAGAC	2 cut(s)	1190, 1671
BplI	GAGNNNNNCTC	2 cut(s)	894, 926
BpmI	CTGGAG	2 cut(s)	852, 857
BpuEI	CTTGAG	3 cut(s)	896, 1073, 1223
BpuMI	CCSGG	5 cut(s)	49, 228, 334, 569, 595
BsaAI	YACGTR	3 cut(s)	94, 517, 1193
BsaHI	GRCGYC	4 cut(s)	296, 446, 527, 1710
BsaI	GGTCTC	2 cut(s)	669, 1256
BsaJI	CCNNGG	6 cut(s)	157, 299, 558, 869, 1015, 1248
BsaWI	WCCGGW	3 cut(s)	415, 599, 1497
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bsc4I	CCNNNNNNNGG	2 cut(s)	870, 1016
Bse118I	RCCGGY	4 cut(s)	442, 448, 529, 563
Bse1I	ACTGG	2 cut(s)	1404, 1516
Bse21I	CCTNAGG	1 cut(s)	8
Bse3DI	GCAATG	1 cut(s)	385
BseAI	TCCGGA	1 cut(s)	599
BseBI	CCWGG	3 cut(s)	870, 1017, 1303
BseDI	CCNNGG	6 cut(s)	157, 299, 558, 869, 1015, 1248
BseGI	GGATG	4 cut(s)	685, 852, 957, 1867
BseLI	CCNNNNNNNGG	2 cut(s)	870, 1016
BseMI	GCAATG	1 cut(s)	385
BseMII	CTCAG	4 cut(s)	191, 602, 680, 747
BseNI	ACTGG	2 cut(s)	1404, 1516
BseRI	GAGGAG	1 cut(s)	261
BseX3I	CGGCCG	3 cut(s)	154, 214, 565
BseXI	GCAGC	9 cut(s)	358, 835, 1063, 1765, 1768, 1801, 1858, 1897, 1945
Bsh1236I	CGCG	3 cut(s)	79, 234, 545
Bsh1285I	CGRYCG	3 cut(s)	157, 217, 568
BshFI	GGCC	7 cut(s)	26, 156, 216, 273, 304, 563, 567
BshNI	GGYRCC	1 cut(s)	445
BsiEI	CGRYCG	3 cut(s)	157, 217, 568
BsiHKAI	GWGCWC	3 cut(s)	458, 589, 706
BslFI	GGGAC	2 cut(s)	584, 1229
BslI	CCNNNNNNNGG	2 cut(s)	870, 1016
BsmAI	GTCTC	4 cut(s)	669, 720, 1063, 1256
BsmFI	GGGAC	2 cut(s)	584, 1229
BsnI	GGCC	7 cut(s)	26, 156, 216, 273, 304, 563, 567
Bso31I	GGTCTC	2 cut(s)	669, 1256
Bsp1286I	GDGCHC	3 cut(s)	458, 589, 706
Bsp13I	TCCGGA	1 cut(s)	599
Bsp143I	GATC	3 cut(s)	832, 918, 1135
Bsp19I	CCATGG	1 cut(s)	558
Bsp68I	TCGCGA	1 cut(s)	234
BspANI	GGCC	7 cut(s)	26, 156, 216, 273, 304, 563, 567
BspCNI	CTCAG	4 cut(s)	190, 601, 679, 748
BspEI	TCCGGA	1 cut(s)	599
BspFNI	CGCG	3 cut(s)	79, 234, 545
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	3 cut(s)	447, 598, 1617
BspMAI	CTGCAG	1 cut(s)	1081
BspT107I	GGYRCC	1 cut(s)	445
BspTNI	GGTCTC	2 cut(s)	669, 1256
BsrBI	CCGCTC	2 cut(s)	222, 429
BsrDI	GCAATG	1 cut(s)	385
BsrFI	RCCGGY	4 cut(s)	442, 448, 529, 563
BsrI	ACTGG	2 cut(s)	1404, 1516
BssAI	RCCGGY	4 cut(s)	442, 448, 529, 563
BssECI	CCNNGG	6 cut(s)	157, 299, 558, 869, 1015, 1248
BssMI	GATC	3 cut(s)	832, 918, 1135
BssNI	GRCGYC	4 cut(s)	296, 446, 527, 1710
BssSI	CACGAG	2 cut(s)	900, 1422
BssT1I	CCWWGG	2 cut(s)	558, 1248
Bst2BI	CACGAG	2 cut(s)	900, 1422
Bst2UI	CCWGG	3 cut(s)	870, 1017, 1303
Bst4CI	ACNGT	5 cut(s)	185, 691, 1111, 1647, 1685
BstACI	GRCGYC	4 cut(s)	296, 446, 527, 1710
BstBAI	YACGTR	3 cut(s)	94, 517, 1193
BstC8I	GCNNGC	7 cut(s)	427, 444, 450, 454, 565, 1239, 1869
BstDEI	CTNAG	7 cut(s)	8, 177, 588, 648, 666, 756, 877
BstDSI	CCRYGG	2 cut(s)	157, 558
BstEII	GGTNACC	1 cut(s)	34
BstENI	CCTNNNNNAGG	1 cut(s)	1014
BstF5I	GGATG	4 cut(s)	685, 852, 957, 1867
BstFNI	CGCG	3 cut(s)	79, 234, 545
BstH2I	RGCGCY	4 cut(s)	449, 541, 812, 877
BstHHI	GCGC	5 cut(s)	81, 448, 540, 811, 876
BstKTI	GATC	3 cut(s)	835, 921, 1138
BstMAI	GTCTC	4 cut(s)	669, 720, 1063, 1256
BstMBI	GATC	3 cut(s)	832, 918, 1135
BstMCI	CGRYCG	3 cut(s)	157, 217, 568
BstMWI	GCNNNNNNNGC	9 cut(s)	117, 126, 153, 219, 535, 788, 1781, 1919, 1967
BstNI	CCWGG	3 cut(s)	870, 1017, 1303
BstNSI	RCATGY	1 cut(s)	1009
BstPI	GGTNACC	1 cut(s)	34
BstSCI	CCNGG	8 cut(s)	47, 226, 332, 567, 593, 868, 1015, 1301
BstSFI	CTRYAG	1 cut(s)	1077
BstUI	CGCG	3 cut(s)	79, 234, 545
BstV1I	GCAGC	9 cut(s)	358, 835, 1063, 1765, 1768, 1801, 1858, 1897, 1945
BstV2I	GAAGAC	2 cut(s)	1190, 1671
BstZI	CGGCCG	3 cut(s)	154, 214, 565
Bsu36I	CCTNAGG	1 cut(s)	8
BsuRI	GGCC	7 cut(s)	26, 156, 216, 273, 304, 563, 567
BtgI	CCRYGG	2 cut(s)	157, 558
BtrI	CACGTC	3 cut(s)	328, 439, 1517
BtsCI	GGATG	4 cut(s)	685, 852, 957, 1867
BtsI	GCAGTG	1 cut(s)	1031
BtsIMutI	CAGTG	5 cut(s)	640, 1031, 1048, 1131, 1558
BtuMI	TCGCGA	1 cut(s)	234
Cac8I	GCNNGC	7 cut(s)	427, 444, 450, 454, 565, 1239, 1869
CciI	TCATGA	1 cut(s)	322
CfoI	GCGC	5 cut(s)	81, 448, 540, 811, 876
Cfr10I	RCCGGY	4 cut(s)	442, 448, 529, 563
Cfr13I	GGNCC	3 cut(s)	24, 224, 597
CpoI	CGGWCCG	1 cut(s)	224
CseI	GACGC	2 cut(s)	304, 535
Csp6I	GTAC	8 cut(s)	181, 290, 514, 1681, 1887, 1917, 1935, 1965
CspCI	CAANNNNNGTGG	2 cut(s)	1383, 1418
CspI	CGGWCCG	1 cut(s)	224
CviQI	GTAC	8 cut(s)	181, 290, 514, 1681, 1887, 1917, 1935, 1965
DdeI	CTNAG	7 cut(s)	8, 177, 588, 648, 666, 756, 877
DinI	GGCGCC	1 cut(s)	447
DpnI	GATC	3 cut(s)	834, 920, 1137
DpnII	GATC	3 cut(s)	832, 918, 1135
DrdI	GACNNNNNNGTC	2 cut(s)	249, 857
DseDI	GACNNNNNNGTC	2 cut(s)	249, 857
EaeI	YGGCCR	5 cut(s)	154, 214, 271, 561, 565
EagI	CGGCCG	3 cut(s)	154, 214, 565
EciI	GGCGGA	1 cut(s)	34
Ecl136II	GAGCTC	1 cut(s)	704
EclXI	CGGCCG	3 cut(s)	154, 214, 565
Eco130I	CCWWGG	2 cut(s)	558, 1248
Eco24I	GRGCYC	1 cut(s)	706
Eco31I	GGTCTC	2 cut(s)	669, 1256
Eco32I	GATATC	1 cut(s)	1435
Eco47I	GGWCC	2 cut(s)	224, 597
Eco52I	CGGCCG	3 cut(s)	154, 214, 565
Eco53kI	GAGCTC	1 cut(s)	704
Eco57I	CTGAAG	1 cut(s)	1534
Eco81I	CCTNAGG	1 cut(s)	8
Eco91I	GGTNACC	1 cut(s)	34
EcoICRI	GAGCTC	1 cut(s)	704
EcoNI	CCTNNNNNAGG	1 cut(s)	1014
EcoO65I	GGTNACC	1 cut(s)	34
EcoRI	GAATTC	1 cut(s)	1849
EcoRII	CCWGG	3 cut(s)	868, 1015, 1301
EcoRV	GATATC	1 cut(s)	1435
EcoT14I	CCWWGG	2 cut(s)	558, 1248
EcoT38I	GRGCYC	1 cut(s)	706
EgeI	GGCGCC	1 cut(s)	447
EheI	GGCGCC	1 cut(s)	447
ErhI	CCWWGG	2 cut(s)	558, 1248
FaqI	GGGAC	2 cut(s)	584, 1229
FauI	CCCGC	3 cut(s)	81, 1062, 1324
FauNDI	CATATG	1 cut(s)	1810
FbaI	TGATCA	1 cut(s)	918
FblI	GTMKAC	1 cut(s)	173
FokI	GGATG	4 cut(s)	692, 839, 964, 1874
FriOI	GRGCYC	1 cut(s)	706
FseI	GGCCGGCC	1 cut(s)	567
FspBI	CTAG	5 cut(s)	165, 735, 857, 935, 1583
GlaI	GCGC	5 cut(s)	80, 447, 539, 810, 875
GsuI	CTGGAG	2 cut(s)	852, 857
HaeII	RGCGCY	4 cut(s)	449, 541, 812, 877
HaeIII	GGCC	7 cut(s)	26, 156, 216, 273, 304, 563, 567
HgaI	GACGC	2 cut(s)	304, 535
HhaI	GCGC	5 cut(s)	81, 448, 540, 811, 876
Hin1I	GRCGYC	4 cut(s)	296, 446, 527, 1710
Hin6I	GCGC	5 cut(s)	79, 446, 538, 809, 874
HinP1I	GCGC	5 cut(s)	79, 446, 538, 809, 874
HincII	GTYRAC	3 cut(s)	174, 645, 850
HindII	GTYRAC	3 cut(s)	174, 645, 850
HindIII	AAGCTT	1 cut(s)	1235
HinfI	GANTC	8 cut(s)	41, 170, 175, 277, 547, 1311, 1601, 1760
HphI	GGTGA	6 cut(s)	46, 1346, 1487, 1673, 1910, 1958
Hpy166II	GTNNAC	5 cut(s)	174, 645, 850, 883, 1495
Hpy188I	TCNGA	8 cut(s)	552, 591, 669, 720, 741, 774, 1107, 1509
Hpy8I	GTNNAC	5 cut(s)	174, 645, 850, 883, 1495
Hpy99I	CGWCG	4 cut(s)	239, 258, 529, 724
HpyAV	CCTTC	1 cut(s)	1591
HpyCH4III	ACNGT	5 cut(s)	185, 691, 1111, 1647, 1685
HpyCH4IV	ACGT	7 cut(s)	93, 327, 438, 516, 1192, 1516, 1710
HpyCH4V	TGCA	6 cut(s)	1022, 1046, 1079, 1345, 1538, 1574
HpyF10VI	GCNNNNNNNGC	9 cut(s)	117, 126, 153, 219, 535, 788, 1781, 1919, 1967
HpyF3I	CTNAG	7 cut(s)	8, 177, 588, 648, 666, 756, 877
HpySE526I	ACGT	7 cut(s)	93, 327, 438, 516, 1192, 1516, 1710
Hsp92I	GRCGYC	4 cut(s)	296, 446, 527, 1710
HspAI	GCGC	5 cut(s)	79, 446, 538, 809, 874
KasI	GGCGCC	1 cut(s)	445
Kpn2I	TCCGGA	1 cut(s)	599
KroI	GCCGGC	3 cut(s)	442, 448, 563
KroNI	GCCGGC	3 cut(s)	444, 450, 565
Ksp22I	TGATCA	1 cut(s)	918
Kzo9I	GATC	3 cut(s)	832, 918, 1135
LmnI	GCTCC	4 cut(s)	152, 219, 806, 1274
Lsp1109I	GCAGC	9 cut(s)	358, 835, 1063, 1765, 1768, 1801, 1858, 1897, 1945
LweI	GCATC	4 cut(s)	112, 388, 1897, 1945
MaeI	CTAG	5 cut(s)	165, 735, 857, 935, 1583
MaeII	ACGT	7 cut(s)	93, 327, 438, 516, 1192, 1516, 1710
MaeIII	GTNAC	6 cut(s)	34, 140, 200, 897, 1334, 1691
MalI	GATC	3 cut(s)	834, 920, 1137
MbiI	CCGCTC	2 cut(s)	222, 429
MboI	GATC	3 cut(s)	832, 918, 1135
MboII	GAAGA	7 cut(s)	98, 997, 1190, 1540, 1676, 1755, 1845
MfeI	CAATTG	1 cut(s)	1283
MhlI	GDGCHC	3 cut(s)	458, 589, 706
MluCI	AATT	9 cut(s)	338, 391, 1283, 1459, 1621, 1726, 1840, 1849, 1990
Mly113I	GGCGCC	1 cut(s)	446
MlyI	GAGTC	4 cut(s)	50, 169, 179, 286
MmeI	TCCRAC	4 cut(s)	665, 743, 936, 1487
MreI	CGCCGGCG	1 cut(s)	448
MroI	TCCGGA	1 cut(s)	599
MroNI	GCCGGC	3 cut(s)	442, 448, 563
MroXI	GAANNNNTTC	1 cut(s)	1310
MseI	TTAA	3 cut(s)	1244, 1592, 1629
MslI	CAYNNNNRTG	2 cut(s)	92, 1191
MspA1I	CMGCKG	1 cut(s)	349
MspR9I	CCNGG	8 cut(s)	49, 228, 334, 569, 595, 870, 1017, 1303
MunI	CAATTG	1 cut(s)	1283
MvaI	CCWGG	3 cut(s)	870, 1017, 1303
MvnI	CGCG	3 cut(s)	79, 234, 545
MwoI	GCNNNNNNNGC	9 cut(s)	117, 126, 153, 219, 535, 788, 1781, 1919, 1967
NaeI	GCCGGC	3 cut(s)	444, 450, 565
NarI	GGCGCC	1 cut(s)	446
NciI	CCSGG	5 cut(s)	49, 228, 334, 569, 595
NcoI	CCATGG	1 cut(s)	558
NdeI	CATATG	1 cut(s)	1810
NdeII	GATC	3 cut(s)	832, 918, 1135
NgoMIV	GCCGGC	3 cut(s)	442, 448, 563
NlaIV	GGNNCC	3 cut(s)	447, 598, 1617
NmeAIII	GCCGAG	1 cut(s)	324
NmuCI	GTSAC	3 cut(s)	34, 897, 1334
NruI	TCGCGA	1 cut(s)	234
NspI	RCATGY	1 cut(s)	1009
OliI	CACNNNNGTG	1 cut(s)	92
PagI	TCATGA	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	4 cut(s)	250, 302, 402, 1513
PdiI	GCCGGC	3 cut(s)	444, 450, 565
PdmI	GAANNNNTTC	1 cut(s)	1310
PfeI	GAWTC	4 cut(s)	547, 1311, 1601, 1760
PflFI	GACNNNGTC	2 cut(s)	40, 595
PfoI	TCCNGGA	2 cut(s)	332, 1301
PleI	GAGTC	4 cut(s)	49, 169, 178, 285
PluTI	GGCGCC	1 cut(s)	449
PpsI	GAGTC	4 cut(s)	49, 169, 178, 285
Ppu21I	YACGTR	3 cut(s)	94, 517, 1193
Psp124BI	GAGCTC	1 cut(s)	706
Psp6I	CCWGG	3 cut(s)	868, 1015, 1301
PspEI	GGTNACC	1 cut(s)	34
PspGI	CCWGG	3 cut(s)	868, 1015, 1301
PspN4I	GGNNCC	3 cut(s)	447, 598, 1617
PspPI	GGNCC	3 cut(s)	24, 224, 597
PsrI	GAACNNNNNNTAC	2 cut(s)	1957, 1989
PstI	CTGCAG	1 cut(s)	1081
PsyI	GACNNNGTC	2 cut(s)	40, 595
PvuII	CAGCTG	1 cut(s)	349
RigI	GGCCGGCC	1 cut(s)	567
RruI	TCGCGA	1 cut(s)	234
RsaI	GTAC	8 cut(s)	182, 291, 515, 1682, 1888, 1918, 1936, 1966
RsaNI	GTAC	8 cut(s)	181, 290, 514, 1681, 1887, 1917, 1935, 1965
RseI	CAYNNNNRTG	2 cut(s)	92, 1191
Rsr2I	CGGWCCG	1 cut(s)	224
RsrII	CGGWCCG	1 cut(s)	224
SacI	GAGCTC	1 cut(s)	706
SalI	GTCGAC	1 cut(s)	172
SaqAI	TTAA	3 cut(s)	1244, 1592, 1629
Sau3AI	GATC	3 cut(s)	832, 918, 1135
Sau96I	GGNCC	3 cut(s)	24, 224, 597
SchI	GAGTC	4 cut(s)	50, 169, 179, 286
ScrFI	CCNGG	8 cut(s)	49, 228, 334, 569, 595, 870, 1017, 1303
SduI	GDGCHC	3 cut(s)	458, 589, 706
SfaNI	GCATC	4 cut(s)	112, 388, 1897, 1945
SfcI	CTRYAG	1 cut(s)	1077
SfoI	GGCGCC	1 cut(s)	447
SgrAI	CRCCGGYG	1 cut(s)	448
SinI	GGWCC	2 cut(s)	224, 597
SmiMI	CAYNNNNRTG	2 cut(s)	92, 1191
SmlI	CTYRAG	3 cut(s)	911, 1088, 1202
SmoI	CTYRAG	3 cut(s)	911, 1088, 1202
SpeI	ACTAGT	1 cut(s)	1582
Sse9I	AATT	9 cut(s)	338, 391, 1283, 1459, 1621, 1726, 1840, 1849, 1990
SspDI	GGCGCC	1 cut(s)	445
SspI	AATATT	1 cut(s)	2002
SspMI	CTAG	5 cut(s)	165, 735, 857, 935, 1583
SstI	GAGCTC	1 cut(s)	706
StyD4I	CCNGG	8 cut(s)	47, 226, 332, 567, 593, 868, 1015, 1301
StyI	CCWWGG	2 cut(s)	558, 1248
TaaI	ACNGT	5 cut(s)	185, 691, 1111, 1647, 1685
TaiI	ACGT	7 cut(s)	96, 330, 441, 519, 1195, 1519, 1713
TaqI	TCGA	5 cut(s)	173, 280, 342, 396, 1979
TaqII	GACCGA	1 cut(s)	53
TasI	AATT	9 cut(s)	338, 391, 1283, 1459, 1621, 1726, 1840, 1849, 1990
TauI	GCSGC	8 cut(s)	79, 123, 126, 129, 216, 432, 614, 1778
TfiI	GAWTC	4 cut(s)	547, 1311, 1601, 1760
Tru1I	TTAA	3 cut(s)	1244, 1592, 1629
Tru9I	TTAA	3 cut(s)	1244, 1592, 1629
TscAI	CASTG	5 cut(s)	640, 1038, 1048, 1138, 1558
TseFI	GTSAC	3 cut(s)	34, 897, 1334
TseI	GCWGC	9 cut(s)	346, 823, 1076, 1778, 1781, 1814, 1871, 1910, 1958
Tsp45I	GTSAC	3 cut(s)	34, 897, 1334
TspDTI	ATGAA	8 cut(s)	311, 1074, 1236, 1610, 1797, 1812, 1965, 2010
TspGWI	ACGGA	2 cut(s)	252, 1703
TspRI	CASTG	5 cut(s)	640, 1038, 1048, 1138, 1558
Tth111I	GACNNNGTC	2 cut(s)	40, 595
VpaK11BI	GGWCC	2 cut(s)	224, 597
XagI	CCTNNNNNAGG	1 cut(s)	1014
XapI	RAATTY	3 cut(s)	338, 391, 1849
XceI	RCATGY	1 cut(s)	1009
XmiI	GTMKAC	1 cut(s)	173
XmnI	GAANNNNTTC	1 cut(s)	1310
XspI	CTAG	5 cut(s)	165, 735, 857, 935, 1583
ZraI	GACGTC	1 cut(s)	1711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.