Rorug02G0035500

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
2828302 .. 2829901
1600 bp
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UTR
Exon/CDS
Intron
Rorug02G0035500.1

Sequence Viewer

Length: 348 bp
ATGAGCCTGCCTGCATCTCCTCATCATTGTGTCCATTGGTTCATTCAAGCTGGAAGCACTGAGGAATATGCTTTTAGCGCGTGGCCTCACTTAGCTTCATATCAGAGTTCTCCAGGTGCAAAGAATAAGACCGATTCCAATAACACAACTATATTTGTTGGAAATCTGGATGCTAACATTACTGATGATCCAGTATGGAGCCCTGCTGCAGAGGCTTTGCAAGGATTAAACAATTCTCAGCTTGGGGAACAAAATATCCAACTTTCTTGGGGTTGCAGTCCTTCAAACAAGCAGCAGCAGGCTCAGGCAGATCCAAACCAATGGAATGCTGTCTATTATGGATACTAG

Protein Analysis

115

Amino Acids

12.61

Weight (kDa)

4.75

Isoelectric Point (pI)

67.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 80
AclWI GGATC 2 cut(s) 182, 305
AgsI TTSAA 2 cut(s) 47, 285
AjnI CCWGG 1 cut(s) 112
AloI GAACNNNNNNTCC 2 cut(s) 240, 272
AluBI AGCT 3 cut(s) 50, 95, 241
AluI AGCT 3 cut(s) 50, 95, 241
AlwI GGATC 2 cut(s) 182, 305
AoxI GGCC 1 cut(s) 83
ApeKI GCWGC 3 cut(s) 206, 292, 295
AspLEI GCGC 1 cut(s) 80
BanII GRGCYC 1 cut(s) 203
BbvI GCAGC 3 cut(s) 193, 304, 307
BciT130I CCWGG 1 cut(s) 114
BciVI GTATCC 1 cut(s) 335
BfaI CTAG 1 cut(s) 346
BfmI CTRYAG 1 cut(s) 207
BfuI GTATCC 1 cut(s) 335
BisI GCNGC 3 cut(s) 207, 293, 296
BlsI GCNGC 3 cut(s) 208, 294, 297
Bme1390I CCNGG 1 cut(s) 114
BmiI GGNNCC 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 2 cut(s) 23, 160
BpmI CTGGAG 1 cut(s) 96
Bpu10I CCTNAGC 1 cut(s) 303
Bse1I ACTGG 1 cut(s) 191
BseBI CCWGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 175
BseMII CTCAG 3 cut(s) 51, 251, 317
BseNI ACTGG 1 cut(s) 191
BseRI GAGGAG 1 cut(s) 9
BseXI GCAGC 3 cut(s) 193, 304, 307
Bsh1236I CGCG 1 cut(s) 80
BshFI GGCC 1 cut(s) 85
BsmI GAATGC 1 cut(s) 331
BsnI GGCC 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 203
Bsp143I GATC 2 cut(s) 187, 310
BspANI GGCC 1 cut(s) 85
BspCNI CTCAG 3 cut(s) 52, 250, 316
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 200
BspMAI CTGCAG 1 cut(s) 211
BspPI GGATC 2 cut(s) 182, 305
BsrI ACTGG 1 cut(s) 191
BssMI GATC 2 cut(s) 187, 310
Bst2UI CCWGG 1 cut(s) 114
BstC8I GCNNGC 3 cut(s) 8, 12, 300
BstDEI CTNAG 4 cut(s) 60, 91, 237, 303
BstF5I GGATG 1 cut(s) 175
BstFNI CGCG 1 cut(s) 80
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 2 cut(s) 190, 313
BstMBI GATC 2 cut(s) 187, 310
BstMWI GCNNNNNNNGC 2 cut(s) 77, 212
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 1 cut(s) 207
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 3 cut(s) 193, 304, 307
BstX2I RGATCY 1 cut(s) 310
BstXI CCANNNNNNTGG 1 cut(s) 321
BstYI RGATCY 1 cut(s) 310
BsuI GTATCC 1 cut(s) 335
BsuRI GGCC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 3 cut(s) 8, 12, 300
CfoI GCGC 1 cut(s) 80
CviJI RGCY 8 cut(s) 6, 50, 85, 95, 201, 215, 241, 302
CviKI_1 RGCY 8 cut(s) 6, 50, 85, 95, 201, 215, 241, 302
DdeI CTNAG 4 cut(s) 60, 91, 237, 303
DpnI GATC 2 cut(s) 189, 312
DpnII GATC 2 cut(s) 187, 310
Eco24I GRGCYC 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 112
EcoT38I GRGCYC 1 cut(s) 203
FaiI YATR 5 cut(s) 69, 100, 152, 196, 339
Fnu4HI GCNGC 3 cut(s) 207, 293, 296
FokI GGATG 1 cut(s) 182
FriOI GRGCYC 1 cut(s) 203
Fsp4HI GCNGC 3 cut(s) 207, 293, 296
FspBI CTAG 1 cut(s) 346
GlaI GCGC 1 cut(s) 79
GluI GCNGC 3 cut(s) 207, 293, 296
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 1 cut(s) 85
HhaI GCGC 1 cut(s) 80
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HinfI GANTC 1 cut(s) 134
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 291
HpyCH4V TGCA 5 cut(s) 14, 119, 209, 220, 276
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 212
HpyF3I CTNAG 4 cut(s) 60, 91, 237, 303
HspAI GCGC 1 cut(s) 78
Kzo9I GATC 2 cut(s) 187, 310
LmnI GCTCC 1 cut(s) 198
Lsp1109I GCAGC 3 cut(s) 193, 304, 307
LweI GCATC 2 cut(s) 23, 160
MaeI CTAG 1 cut(s) 346
MalI GATC 2 cut(s) 189, 312
MboI GATC 2 cut(s) 187, 310
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 1 cut(s) 203
MluCI AATT 1 cut(s) 232
MmeI TCCRAC 2 cut(s) 139, 283
MnlI CCTC 4 cut(s) 30, 55, 96, 205
MseI TTAA 1 cut(s) 227
MslI CAYNNNNRTG 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 331
MvaI CCWGG 1 cut(s) 114
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 77, 212
NdeII GATC 2 cut(s) 187, 310
NlaIV GGNNCC 1 cut(s) 200
PctI GAATGC 1 cut(s) 331
PfeI GAWTC 1 cut(s) 134
PkrI GCNGC 3 cut(s) 208, 294, 297
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 200
PstI CTGCAG 1 cut(s) 211
PsuI RGATCY 1 cut(s) 310
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 227
SatI GCNGC 3 cut(s) 207, 293, 296
Sau3AI GATC 2 cut(s) 187, 310
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 1 cut(s) 203
SetI ASST 4 cut(s) 52, 97, 118, 243
SfaNI GCATC 2 cut(s) 23, 160
SfcI CTRYAG 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 27
Sse9I AATT 1 cut(s) 232
SspMI CTAG 1 cut(s) 346
StyD4I CCNGG 1 cut(s) 112
TaqII GACCGA 1 cut(s) 146
TasI AATT 1 cut(s) 232
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TscAI CASTG 1 cut(s) 64
TseI GCWGC 3 cut(s) 206, 292, 295
TspDTI ATGAA 2 cut(s) 31, 87
TspRI CASTG 1 cut(s) 64
XspI CTAG 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.