Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001069

Physical Location & Seq

Genomic Coordinates Reverse (-)

2832166 .. 2835604

Gene Structure 3439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0035600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGCAGCGGCAGCTCTTGAACAAGCTCAGCTGGAGAGCCATCAATGGATTTGCTCAGTTCACTCAAAGGAGAGCGATGCACGATAGGAACAAGAAGGCGATGGAGTTAATAGCCAAAGGGTGGAGCGCTCTGAAGGAAGTTGATAGAGTCATTGATTACTGCGAGCTCAATGATCGCCGCCTCATTCCTTTATTAAGGGCAGCAAAAGATAATTTTGAGTTGGCTCTAGAGACTGACAACTCAAATACCCATGCCAGGTATTGGTTGTCCAGATTGCATTTGAAATACCATGTCCCAGGGGCATGCAAAGCTATAGGAGCTGCTTTGTTAGTTGAAGCGGCAAATATGGGTGATGCAGATGCACAATATGAACTTGCTTGTCGTCTTAGAGTTGAGAATGAATATGTCCAATCGGATCAACAAGCTTTCCATTATCTGGAGAAGGCAGTTGACCAGTTGCATCCTGGTGCTCTTTACCTTCTGGGTGTTGTGTATCTGACCGGAGACTGTGTCAAGAAAGATGTTGCCTCCGCCTTATGGTGTTTCCATAGGGCATCAGAGAAGGGACATGCTGGTGCAGCTATAGCATATGGGTCTCTTCTTCTTCAAGGTGTTGAAGTCCCAGAATCTGTGATGAACTTGACTTCAAAAAGGGGTACTTCAGCCAGAAAGGCAAGAAAAAATGCAGAAAGCCTTGTAAGAGACCAGGCAGGAATGGCAAGAGAGCGGTTTCAGATCGCTGCAAAAGCTGGATGTGATCTTGGACTGAAATGGTTGGAAAGACTTGACGAGGAAGAGAAGCATCTATTGACCGAAAATGAAATGGTAGAAAATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

279

Amino Acids

31.45

Weight (kDa)

8.15

Isoelectric Point (pI)

30.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sel1	PF08238	157 - 190	3e-06	Sel1 repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56890
fragaria_vesca	FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370
malus_domestica	MD02G1079800.v1.1 MD09G1193100.v1.1 MD15G1207500.v1.1
prunus_persica	Prupe.3G049500_v2.0.a1 Prupe.7G209300_v2.0.a1 Prupe.7G209300_v2.0.a1
pyrus_communis	pycom02g06360 pycom09g10970 pycom15g18390
rosa_chinensis	RchiOBHm_Chr2g0093411 RchiOBHm_Chr2g0143231
rosa_laevigata	RLG00000016396 RLG00000020017 RLG00000020021
rosa_multiflora	Rmu_co8519777.1_g000001 Rmu_sc0003950.1_g000003
rosa_roxburghii	Rroxscaffold_2G00102000 Rroxscaffold_2G00148130
rosa_rugosa	Rorug02G0035200 Rorug02G0035200 Rorug02G0035300 Rorug02G0035400 Rorug02G0035500 Rorug02G0035600 Rorug02G0379700
rosa_samantha	Rh2AG081600 Rh2AG432500 Rh2BG082900 Rh2BG441100 Rh2CG084900 Rh2CG418300 Rh2DG080600 Rh2DG451200
rosa_wichuraiana	Rw2G006500 Rw2G035310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	120, 261, 436
AccBSI	CCGCTC	1 cut(s)	727
AciI	CCGC	5 cut(s)	7, 178, 338, 531, 727
AclWI	GGATC	1 cut(s)	423
AcuI	CTGAAG	2 cut(s)	152, 645
AfaI	GTAC	1 cut(s)	658
AfeI	AGCGCT	1 cut(s)	127
AfiI	CCNNNNNNNGG	5 cut(s)	120, 255, 261, 436, 537
AgsI	TTSAA	6 cut(s)	19, 283, 335, 608, 617, 648
AjnI	CCWGG	4 cut(s)	254, 295, 463, 705
AluBI	AGCT	9 cut(s)	13, 25, 30, 166, 311, 320, 425, 581, 749
AluI	AGCT	9 cut(s)	13, 25, 30, 166, 311, 320, 425, 581, 749
Alw21I	GWGCWC	2 cut(s)	168, 472
Alw26I	GTCTC	4 cut(s)	224, 498, 600, 696
AlwI	GGATC	1 cut(s)	423
AlwNI	CAGNNNCTG	1 cut(s)	629
Aor51HI	AGCGCT	1 cut(s)	127
ApeKI	GCWGC	6 cut(s)	4, 10, 200, 320, 578, 740
AspLEI	GCGC	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	168
Bbv12I	GWGCWC	2 cut(s)	168, 472
BbvI	GCAGC	6 cut(s)	16, 22, 212, 307, 590, 727
BccI	CCATC	2 cut(s)	47, 94
BciT130I	CCWGG	4 cut(s)	256, 297, 465, 707
BcoDI	GTCTC	4 cut(s)	224, 498, 600, 696
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	2 cut(s)	312, 582
BfoI	RGCGCY	1 cut(s)	129
BglI	GCCNNNNNGGC	1 cut(s)	671
BisI	GCNGC	9 cut(s)	5, 8, 11, 178, 201, 321, 339, 579, 741
BlpI	GCTNAGC	1 cut(s)	26
BlsI	GCNGC	9 cut(s)	6, 9, 12, 179, 202, 322, 340, 580, 742
Bme1390I	CCNGG	4 cut(s)	256, 297, 465, 707
BmrFI	CCNGG	4 cut(s)	256, 297, 465, 707
BmsI	GCATC	6 cut(s)	66, 343, 349, 469, 563, 811
BpmI	CTGGAG	2 cut(s)	52, 458
Bpu1102I	GCTNAGC	1 cut(s)	26
BsaI	GGTCTC	2 cut(s)	600, 696
BsaJI	CCNNGG	2 cut(s)	295, 296
BsaWI	WCCGGW	1 cut(s)	500
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	5 cut(s)	120, 255, 261, 436, 537
Bse1I	ACTGG	1 cut(s)	454
BseBI	CCWGG	4 cut(s)	256, 297, 465, 707
BseDI	CCNNGG	2 cut(s)	295, 296
BseGI	GGATG	2 cut(s)	460, 758
BseLI	CCNNNNNNNGG	5 cut(s)	120, 255, 261, 436, 537
BseMII	CTCAG	2 cut(s)	40, 68
BseNI	ACTGG	1 cut(s)	454
BseXI	GCAGC	6 cut(s)	16, 22, 212, 307, 590, 727
BsgI	GTGCAG	1 cut(s)	597
BsiHKAI	GWGCWC	2 cut(s)	168, 472
BsiSI	CCGG	1 cut(s)	501
BslFI	GGGAC	3 cut(s)	278, 579, 605
BslI	CCNNNNNNNGG	5 cut(s)	120, 255, 261, 436, 537
BsmAI	GTCTC	4 cut(s)	224, 498, 600, 696
BsmFI	GGGAC	3 cut(s)	278, 579, 605
Bso31I	GGTCTC	2 cut(s)	600, 696
Bsp1286I	GDGCHC	2 cut(s)	168, 472
Bsp143I	GATC	4 cut(s)	172, 415, 735, 757
Bsp1720I	GCTNAGC	1 cut(s)	26
BspACI	CCGC	5 cut(s)	7, 178, 338, 531, 727
BspCNI	CTCAG	2 cut(s)	39, 67
BspPI	GGATC	1 cut(s)	423
BspTNI	GGTCTC	2 cut(s)	600, 696
BsrBI	CCGCTC	1 cut(s)	727
BsrI	ACTGG	1 cut(s)	454
BssECI	CCNNGG	2 cut(s)	295, 296
BssMI	GATC	4 cut(s)	172, 415, 735, 757
Bst2UI	CCWGG	4 cut(s)	256, 297, 465, 707
Bst4CI	ACNGT	1 cut(s)	509
Bst6I	CTCTTC	2 cut(s)	603, 789
BstC8I	GCNNGC	2 cut(s)	164, 304
BstDEI	CTNAG	3 cut(s)	26, 54, 386
BstF5I	GGATG	2 cut(s)	460, 758
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	4 cut(s)	175, 418, 738, 760
BstMAI	GTCTC	4 cut(s)	224, 498, 600, 696
BstMBI	GATC	4 cut(s)	172, 415, 735, 757
BstMWI	GCNNNNNNNGC	8 cut(s)	10, 308, 317, 578, 584, 671, 716, 746
BstNI	CCWGG	4 cut(s)	256, 297, 465, 707
BstNSI	RCATGY	2 cut(s)	306, 572
BstSCI	CCNGG	4 cut(s)	254, 295, 463, 705
BstSFI	CTRYAG	2 cut(s)	312, 582
BstV1I	GCAGC	6 cut(s)	16, 22, 212, 307, 590, 727
BtgZI	GCGATG	2 cut(s)	89, 113
BtsCI	GGATG	2 cut(s)	460, 758
Cac8I	GCNNGC	2 cut(s)	164, 304
CaiI	CAGNNNCTG	1 cut(s)	629
CfoI	GCGC	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	657
CviAII	CATG	4 cut(s)	251, 290, 303, 569
CviQI	GTAC	1 cut(s)	657
DdeI	CTNAG	3 cut(s)	26, 54, 386
DpnI	GATC	4 cut(s)	174, 417, 737, 759
DpnII	GATC	4 cut(s)	172, 415, 735, 757
Eam1104I	CTCTTC	2 cut(s)	603, 789
EarI	CTCTTC	2 cut(s)	603, 789
EciI	GGCGGA	1 cut(s)	520
Ecl136II	GAGCTC	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	168
Eco31I	GGTCTC	2 cut(s)	600, 696
Eco47III	AGCGCT	1 cut(s)	127
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	2 cut(s)	152, 645
EcoICRI	GAGCTC	1 cut(s)	166
EcoRII	CCWGG	4 cut(s)	254, 295, 463, 705
EcoT38I	GRGCYC	1 cut(s)	168
FaeI	CATG	4 cut(s)	254, 293, 306, 572
FalI	AAGNNNNNCTT	2 cut(s)	643, 675
FaqI	GGGAC	3 cut(s)	278, 579, 605
FatI	CATG	4 cut(s)	250, 289, 302, 568
FauNDI	CATATG	1 cut(s)	589
Fnu4HI	GCNGC	9 cut(s)	5, 8, 11, 178, 201, 321, 339, 579, 741
FokI	GGATG	2 cut(s)	447, 765
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	9 cut(s)	5, 8, 11, 178, 201, 321, 339, 579, 741
FspBI	CTAG	1 cut(s)	227
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	9 cut(s)	5, 8, 11, 178, 201, 321, 339, 579, 741
GsuI	CTGGAG	2 cut(s)	52, 458
HaeII	RGCGCY	1 cut(s)	129
HapII	CCGG	1 cut(s)	501
HhaI	GCGC	1 cut(s)	128
Hin1II	CATG	4 cut(s)	254, 293, 306, 572
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HindIII	AAGCTT	1 cut(s)	423
HinfI	GANTC	2 cut(s)	147, 626
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	2 cut(s)	60, 451
Hpy188I	TCNGA	5 cut(s)	132, 415, 498, 559, 735
Hpy188III	TCNNGA	5 cut(s)	16, 227, 270, 437, 514
Hpy8I	GTNNAC	2 cut(s)	60, 451
HpyAV	CCTTC	5 cut(s)	88, 127, 436, 488, 556
HpyCH4III	ACNGT	1 cut(s)	509
HpyF10VI	GCNNNNNNNGC	8 cut(s)	10, 308, 317, 578, 584, 671, 716, 746
HpyF3I	CTNAG	3 cut(s)	26, 54, 386
Hsp92II	CATG	4 cut(s)	254, 293, 306, 572
HspAI	GCGC	1 cut(s)	126
Kzo9I	GATC	4 cut(s)	172, 415, 735, 757
LmnI	GCTCC	2 cut(s)	123, 317
Lsp1109I	GCAGC	6 cut(s)	16, 22, 212, 307, 590, 727
LweI	GCATC	6 cut(s)	66, 343, 349, 469, 563, 811
MaeI	CTAG	1 cut(s)	227
MalI	GATC	4 cut(s)	174, 417, 737, 759
MbiI	CCGCTC	1 cut(s)	727
MboI	GATC	4 cut(s)	172, 415, 735, 757
MboII	GAAGA	4 cut(s)	590, 593, 596, 806
MhlI	GDGCHC	2 cut(s)	168, 472
MluCI	AATT	1 cut(s)	211
MlyI	GAGTC	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	756
MnlI	CCTC	3 cut(s)	191, 538, 784
MseI	TTAA	2 cut(s)	107, 194
MslI	CAYNNNNRTG	2 cut(s)	465, 573
MspA1I	CMGCKG	2 cut(s)	7, 30
MspI	CCGG	1 cut(s)	501
MspR9I	CCNGG	4 cut(s)	256, 297, 465, 707
MvaI	CCWGG	4 cut(s)	256, 297, 465, 707
MwoI	GCNNNNNNNGC	8 cut(s)	10, 308, 317, 578, 584, 671, 716, 746
NdeI	CATATG	1 cut(s)	589
NdeII	GATC	4 cut(s)	172, 415, 735, 757
NlaIII	CATG	4 cut(s)	254, 293, 306, 572
NspI	RCATGY	2 cut(s)	306, 572
PaeI	GCATGC	1 cut(s)	306
PasI	CCCWGGG	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	626
PflFI	GACNNNGTC	1 cut(s)	509
PflMI	CCANNNNNTGG	3 cut(s)	120, 261, 436
PkrI	GCNGC	9 cut(s)	6, 9, 12, 179, 202, 322, 340, 580, 742
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	4 cut(s)	254, 295, 463, 705
PspGI	CCWGG	4 cut(s)	254, 295, 463, 705
PstNI	CAGNNNCTG	1 cut(s)	629
PsyI	GACNNNGTC	1 cut(s)	509
PvuII	CAGCTG	1 cut(s)	30
RsaI	GTAC	1 cut(s)	658
RsaNI	GTAC	1 cut(s)	657
RseI	CAYNNNNRTG	2 cut(s)	465, 573
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	107, 194
SatI	GCNGC	9 cut(s)	5, 8, 11, 178, 201, 321, 339, 579, 741
Sau3AI	GATC	4 cut(s)	172, 415, 735, 757
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	4 cut(s)	256, 297, 465, 707
SduI	GDGCHC	2 cut(s)	168, 472
SfaNI	GCATC	6 cut(s)	66, 343, 349, 469, 563, 811
SfcI	CTRYAG	2 cut(s)	312, 582
SmiMI	CAYNNNNRTG	2 cut(s)	465, 573
SphI	GCATGC	1 cut(s)	306
Sse9I	AATT	1 cut(s)	211
SsiI	CCGC	5 cut(s)	7, 178, 338, 531, 727
SspMI	CTAG	1 cut(s)	227
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	4 cut(s)	254, 295, 463, 705
TaaI	ACNGT	1 cut(s)	509
TaqII	GACCGA	1 cut(s)	827
TasI	AATT	1 cut(s)	211
TauI	GCSGC	3 cut(s)	10, 180, 341
TfiI	GAWTC	1 cut(s)	626
Tru1I	TTAA	2 cut(s)	107, 194
Tru9I	TTAA	2 cut(s)	107, 194
TseI	GCWGC	6 cut(s)	4, 10, 200, 320, 578, 740
TspDTI	ATGAA	4 cut(s)	384, 414, 650, 834
Tth111I	GACNNNGTC	1 cut(s)	509
Van91I	CCANNNNNTGG	3 cut(s)	120, 261, 436
XbaI	TCTAGA	1 cut(s)	226
XceI	RCATGY	2 cut(s)	306, 572
XcmI	CCANNNNNNNNNTGG	1 cut(s)	461
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.