Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001069

Physical Location & Seq

Genomic Coordinates Reverse (-)

2808583 .. 2809945

Gene Structure 1363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0035400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTGCCAAGGCGGCCCTTTTCCATTTGATGGCAAAGCTCTAGTACTGGACCTGCCGCAGCCGGAACATCATAACAAGAAATTAATGTTTACCACTAACCGTGTCTGGCGCGGGACTAGGCTAGTAGTTTATCTCATGTCCTTGGATGAAAACCAAGAAAATATCAGTGAAATCCATGTGCTGAAGTGGCCAGAGCTCCCTCGTGAACCATGGGACCATCATTTGTTCCATCTAGGGGGAAACAATGTCTGCCTTGTGGCCATCCCCTTCAGAAACTCGAATGAAGAGGATGAAGCTTACGAGCCTGCGATTCATACCATACAAGGTGCTGCTATACCATTTCAATTTGAGTTTGATATCTCCAAGGTGAACGATGACAAGGGGAATTGTTTTACTGTCCGATTCCAGCCTCCTCGCATTTTCGAATACCATACCGGTCCATCCTGTTACCAGCCTGAACAACTTGGTTGCTTTGTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

160

Amino Acids

18.51

Weight (kDa)

5.4

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56890
fragaria_vesca	FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_1g07530 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370 FvH4_6g33370
malus_domestica	MD02G1079800.v1.1 MD09G1193100.v1.1 MD15G1207500.v1.1
prunus_persica	Prupe.3G049500_v2.0.a1 Prupe.7G209300_v2.0.a1 Prupe.7G209300_v2.0.a1
pyrus_communis	pycom02g06360 pycom09g10970 pycom15g18390
rosa_chinensis	RchiOBHm_Chr2g0093411 RchiOBHm_Chr2g0143231
rosa_laevigata	RLG00000016396 RLG00000020017 RLG00000020021
rosa_multiflora	Rmu_co8519777.1_g000001 Rmu_sc0003950.1_g000003
rosa_roxburghii	Rroxscaffold_2G00102000 Rroxscaffold_2G00148130
rosa_rugosa	Rorug02G0035200 Rorug02G0035200 Rorug02G0035300 Rorug02G0035400 Rorug02G0035500 Rorug02G0035600 Rorug02G0379700
rosa_samantha	Rh2AG081600 Rh2AG432500 Rh2BG082900 Rh2BG441100 Rh2CG084900 Rh2CG418300 Rh2DG080600 Rh2DG451200
rosa_wichuraiana	Rw2G006500 Rw2G035310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	60
AccB7I	CCANNNNNTGG	1 cut(s)	29
AccII	CGCG	1 cut(s)	111
AciI	CCGC	3 cut(s)	12, 56, 111
AcoI	YGGCCR	2 cut(s)	188, 258
AcuI	CTGAAG	2 cut(s)	203, 253
AfaI	GTAC	1 cut(s)	45
AfiI	CCNNNNNNNGG	2 cut(s)	29, 235
AgeI	ACCGGT	1 cut(s)	434
AgsI	TTSAA	1 cut(s)	344
AluBI	AGCT	3 cut(s)	38, 196, 296
AluI	AGCT	3 cut(s)	38, 196, 296
Alw21I	GWGCWC	2 cut(s)	198, 480
AoxI	GGCC	3 cut(s)	13, 188, 258
ApeKI	GCWGC	2 cut(s)	58, 329
AseI	ATTAAT	1 cut(s)	83
AsiGI	ACCGGT	1 cut(s)	434
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	4 cut(s)	14, 49, 214, 437
AsuHPI	GGTGA	1 cut(s)	379
AsuII	TTCGAA	1 cut(s)	423
AvaII	GGWCC	3 cut(s)	49, 214, 437
BalI	TGGCCA	2 cut(s)	190, 260
BanII	GRGCYC	1 cut(s)	198
BauI	CACGAG	1 cut(s)	201
Bbv12I	GWGCWC	2 cut(s)	198, 480
BbvI	GCAGC	2 cut(s)	70, 316
BccI	CCATC	5 cut(s)	23, 225, 237, 269, 448
BfaI	CTAG	4 cut(s)	41, 117, 122, 233
BfuAI	ACCTGC	1 cut(s)	60
BglI	GCCNNNNNGGC	1 cut(s)	12
BisI	GCNGC	4 cut(s)	13, 56, 59, 330
BlsI	GCNGC	4 cut(s)	14, 57, 60, 331
BmcAI	AGTACT	1 cut(s)	45
Bme18I	GGWCC	3 cut(s)	49, 214, 437
BmgT120I	GGNCC	4 cut(s)	14, 49, 214, 437
BmiI	GGNNCC	1 cut(s)	215
Bpu14I	TTCGAA	1 cut(s)	423
BsaJI	CCNNGG	4 cut(s)	7, 141, 209, 363
BsaWI	WCCGGW	1 cut(s)	434
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 235
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	1 cut(s)	51
BseDI	CCNNGG	4 cut(s)	7, 141, 209, 363
BseGI	GGATG	4 cut(s)	151, 261, 295, 440
BseLI	CCNNNNNNNGG	2 cut(s)	29, 235
BseNI	ACTGG	1 cut(s)	51
BseRI	GAGGAG	1 cut(s)	402
BseXI	GCAGC	2 cut(s)	70, 316
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	3 cut(s)	15, 190, 260
BshTI	ACCGGT	1 cut(s)	434
BsiHKAI	GWGCWC	2 cut(s)	198, 480
BsiSI	CCGG	2 cut(s)	62, 435
BslFI	GGGAC	2 cut(s)	127, 227
BslI	CCNNNNNNNGG	2 cut(s)	29, 235
BsmFI	GGGAC	2 cut(s)	127, 227
BsnI	GGCC	3 cut(s)	15, 190, 260
Bsp119I	TTCGAA	1 cut(s)	423
Bsp1286I	GDGCHC	2 cut(s)	198, 480
Bsp19I	CCATGG	1 cut(s)	209
BspACI	CCGC	3 cut(s)	12, 56, 111
BspANI	GGCC	3 cut(s)	15, 190, 260
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	215
BspMI	ACCTGC	1 cut(s)	60
BspT104I	TTCGAA	1 cut(s)	423
BsrFI	RCCGGY	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	51
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	4 cut(s)	7, 141, 209, 363
BssSI	CACGAG	1 cut(s)	201
BssT1I	CCWWGG	4 cut(s)	7, 141, 209, 363
Bst2BI	CACGAG	1 cut(s)	201
Bst4CI	ACNGT	2 cut(s)	101, 397
Bst6I	CTCTTC	1 cut(s)	279
BstBI	TTCGAA	1 cut(s)	423
BstC8I	GCNNGC	1 cut(s)	306
BstDSI	CCRYGG	1 cut(s)	209
BstF5I	GGATG	4 cut(s)	151, 261, 295, 440
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 187
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	70, 316
BsuRI	GGCC	3 cut(s)	15, 190, 260
BtgI	CCRYGG	1 cut(s)	209
BtsCI	GGATG	4 cut(s)	151, 261, 295, 440
BtsIMutI	CAGTG	1 cut(s)	172
BveI	ACCTGC	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	306
CfoI	GCGC	1 cut(s)	111
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	4 cut(s)	14, 49, 214, 437
Csp6I	GTAC	1 cut(s)	44
CspAI	ACCGGT	1 cut(s)	434
CviAII	CATG	3 cut(s)	136, 176, 210
CviQI	GTAC	1 cut(s)	44
EaeI	YGGCCR	2 cut(s)	188, 258
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Ecl136II	GAGCTC	1 cut(s)	196
Eco130I	CCWWGG	4 cut(s)	7, 141, 209, 363
Eco24I	GRGCYC	1 cut(s)	198
Eco32I	GATATC	1 cut(s)	358
Eco47I	GGWCC	3 cut(s)	49, 214, 437
Eco53kI	GAGCTC	1 cut(s)	196
Eco57I	CTGAAG	2 cut(s)	203, 253
EcoICRI	GAGCTC	1 cut(s)	196
EcoRV	GATATC	1 cut(s)	358
EcoT14I	CCWWGG	4 cut(s)	7, 141, 209, 363
EcoT38I	GRGCYC	1 cut(s)	198
ErhI	CCWWGG	4 cut(s)	7, 141, 209, 363
FaeI	CATG	3 cut(s)	139, 179, 213
FaiI	YATR	8 cut(s)	72, 137, 177, 211, 315, 320, 335, 432
FaqI	GGGAC	2 cut(s)	127, 227
FatI	CATG	3 cut(s)	135, 175, 209
FauI	CCCGC	1 cut(s)	104
Fnu4HI	GCNGC	4 cut(s)	13, 56, 59, 330
FokI	GGATG	4 cut(s)	158, 248, 302, 427
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	4 cut(s)	13, 56, 59, 330
FspBI	CTAG	4 cut(s)	41, 117, 122, 233
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	4 cut(s)	13, 56, 59, 330
HaeIII	GGCC	3 cut(s)	15, 190, 260
HapII	CCGG	2 cut(s)	62, 435
HhaI	GCGC	1 cut(s)	111
Hin1II	CATG	3 cut(s)	139, 179, 213
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	2 cut(s)	310, 402
HpaII	CCGG	2 cut(s)	62, 435
HphI	GGTGA	1 cut(s)	379
Hpy166II	GTNNAC	3 cut(s)	90, 206, 370
Hpy188I	TCNGA	2 cut(s)	272, 401
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	3 cut(s)	90, 206, 370
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	2 cut(s)	101, 397
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 187
Hsp92II	CATG	3 cut(s)	139, 179, 213
HspAI	GCGC	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	201
Lsp1109I	GCAGC	2 cut(s)	70, 316
MaeI	CTAG	4 cut(s)	41, 117, 122, 233
MaeIII	GTNAC	1 cut(s)	446
MboII	GAAGA	1 cut(s)	296
MhlI	GDGCHC	2 cut(s)	198, 480
MlsI	TGGCCA	2 cut(s)	190, 260
MluCI	AATT	3 cut(s)	80, 344, 385
MluNI	TGGCCA	2 cut(s)	190, 260
MnlI	CCTC	4 cut(s)	210, 280, 420, 423
Mox20I	TGGCCA	2 cut(s)	190, 260
MscI	TGGCCA	2 cut(s)	190, 260
MseI	TTAA	1 cut(s)	83
Msp20I	TGGCCA	2 cut(s)	190, 260
MspI	CCGG	2 cut(s)	62, 435
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	12, 187
NcoI	CCATGG	1 cut(s)	209
NlaIII	CATG	3 cut(s)	139, 179, 213
NlaIV	GGNNCC	1 cut(s)	215
NspV	TTCGAA	1 cut(s)	423
PfeI	GAWTC	2 cut(s)	310, 402
PflMI	CCANNNNNTGG	1 cut(s)	29
PinAI	ACCGGT	1 cut(s)	434
PkrI	GCNGC	4 cut(s)	14, 57, 60, 331
PshBI	ATTAAT	1 cut(s)	83
Psp124BI	GAGCTC	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	215
PspPI	GGNCC	4 cut(s)	14, 49, 214, 437
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
SacI	GAGCTC	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	4 cut(s)	13, 56, 59, 330
Sau96I	GGNCC	4 cut(s)	14, 49, 214, 437
ScaI	AGTACT	1 cut(s)	45
SduI	GDGCHC	2 cut(s)	198, 480
SetI	ASST	6 cut(s)	40, 54, 198, 298, 328, 369
SfuI	TTCGAA	1 cut(s)	423
SinI	GGWCC	3 cut(s)	49, 214, 437
Sse9I	AATT	3 cut(s)	80, 344, 385
SsiI	CCGC	3 cut(s)	12, 56, 111
SspMI	CTAG	4 cut(s)	41, 117, 122, 233
SstI	GAGCTC	1 cut(s)	198
StyI	CCWWGG	4 cut(s)	7, 141, 209, 363
TaaI	ACNGT	2 cut(s)	101, 397
TaqI	TCGA	2 cut(s)	278, 423
TasI	AATT	3 cut(s)	80, 344, 385
TatI	WGTACW	1 cut(s)	43
TauI	GCSGC	2 cut(s)	15, 58
TfiI	GAWTC	2 cut(s)	310, 402
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TscAI	CASTG	1 cut(s)	172
TseI	GCWGC	2 cut(s)	58, 329
TspDTI	ATGAA	4 cut(s)	162, 297, 302, 306
TspRI	CASTG	1 cut(s)	172
Van91I	CCANNNNNTGG	1 cut(s)	29
VpaK11BI	GGWCC	3 cut(s)	49, 214, 437
VspI	ATTAAT	1 cut(s)	83
XspI	CTAG	4 cut(s)	41, 117, 122, 233
ZrmI	AGTACT	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.