RLG00000021352

Regulator of Vps4 activity in the MVB pathway

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
74392479 .. 74394877
2399 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021352

Sequence Viewer

Length: 1665 bp
ATGTTTGACATATTGTTCGGGTGGAGAAAAGCTTCAAAGTGCAAGCAGCTGATCAAACAGGTGCAGTGCCGGCTCAAGTTGCTGAAGAACAAGAGGGCTACTATTGTGAGGCAATTGCGAGAAGACGCGGCGGAGCTAATCAAGAATGGCTACGAAGGCAAAGCCTTCAATAGGGTTGAGCAGATAATCAAAGATGAATGCATAGTGGCAGTGTATGAACTGTTGGATAATTTCTGTGAATTTGTCCTCCTTCACCTTTCATATATTCGAAGACACAAGGACTGTCCAAATGACATAAATGAAGCAGTTTCAAGTCTTATATATGCTTCTGCTAGATGTGGAGATCTCCCTGAGCTTAGAACAATCCGAAATCTCTTCGGAGAACGTTATGGTCAGAAATATGCAATGACTGCTCTTGAACTATTCCCCGGGAACCTTGTGAACTGTCAGGTAATAGAGAAACTGTCCCTAAAGTCAGTAACAGATGATATGAAGCACAGATTGGTCAATGAAATAGCAAGGAATTACTGCATCAAACCAGAGGTTTTAGCCATCGAATACTATTCCGAGTGGCAACAGAAGGCAAAGGAAATTAGTGGACATCAAGCACTGGATTCAAATGTTCGGACTTATTACGAAAGATCTGAAATGCAAATTTGCTCTGTCGAAGGGCTTGAAACAGAAGATGTTCATGATTCCAGTATATCTACTACTACTTCTTCAGTAGCTCAGCTGGCCCCGACTATATCAGACTCTCCGGTGCGTAATGAAATACAGGAAGAACAGGACTTTGCCGAAGTGGATTCTCCAAGGGGTGGAGAAATAGTGGTGTACAATAATGACATTGAAGAGGTTCAGTCTTGCACAACAAGAGATGGAGATGACTGCCAGGACCAAAGAGCTTTCAAGTTCAAAGCTAGTGTTCCGAAAAAGGAGAATCTTGAAAACAGCTTTGATCGTGGTCATGTGAACACATGGAGTGTGAATTCAGGGTCAAGAGTCTCTACGAGAAGTTTTGGGGGAAATGGGAAAAGACCAAGGAAGAGATCAGTGTCTCAGGAAAATCAGTTTTCGAAGGATAGTGAATTTCCAAGTTACTATGCTAGGAAGCATCAGAAGAAATTGGGACCTAACATTTTGTCATGCAAGTGCAGCCTGGTAAATCCATGTTATGTTTGCAATGGGAATGAAAATGCCGAATTTGAAGTTCCAACATTGAAGCAAAATAGAGGGATTTCAACTAGGGTGGGATTTGCTAATCCTGGTCATGAACATAAAAGTTTGGTGTACAATGTTTTCACTTACCCTGATCACCAGCCAAAACCGCAAAGCAAAGTGTTCAAAGGAAACATAGAGGAATCTGGTTTTCAACGCAAGCTTCCCTCTTATACTTCGTCTTCATCATCATCATCTTCTCCAACTGTGACTAGTTCTTGGACGAGAAAAGAAATGGCACCTCCTTACTTCAGAAACATGACAATGCCGCTGGAAAGAGTCAAGGACAAGCGGAAAGAAGAGTTTCAACGATCCATTTCGGACTGTTTTCAGTATCCTACTCATGTTCATCCAAAGCTGCCAGATTATGATGATATTGCAGCTAAATTCATGGCTCTCAAGAAAGAACGTCTGCAAACTAATAAGCCTCCTCGCAGCAATCAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

555

Amino Acids

63.47

Weight (kDa)

8.67

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ist1 PF03398 15 - 178 2.9e-51 Regulator of Vps4 activity in the MVB pathway
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013512)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1453
AccB7I CCANNNNNTGG 1 cut(s) 815
AccII CGCG 1 cut(s) 128
AciI CCGC 5 cut(s) 128, 131, 1325, 1484, 1507
AclI AACGTT 1 cut(s) 385
AclWI GGATC 1 cut(s) 1521
AcsI RAATTY 6 cut(s) 239, 654, 985, 1085, 1199, 1601
AcuI CTGAAG 3 cut(s) 104, 705, 1450
AfaI GTAC 2 cut(s) 833, 1289
AfiI CCNNNNNNNGG 2 cut(s) 171, 815
AhlI ACTAGT 1 cut(s) 1427
AjnI CCWGG 3 cut(s) 888, 1155, 1261
AjuI GAANNNNNNNTTGG 2 cut(s) 485, 517
Alw26I GTCTC 2 cut(s) 1006, 1059
AlwI GGATC 1 cut(s) 1521
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 1 cut(s) 735
ApeKI GCWGC 5 cut(s) 46, 1152, 1573, 1595, 1650
ApoI RAATTY 6 cut(s) 239, 654, 985, 1085, 1199, 1601
ArsI GACNNNNNNTTYG 1 cut(s) 31
Asp700I GAANNNNTTC 4 cut(s) 31, 687, 852, 1518
AspS9I GGNCC 3 cut(s) 736, 892, 1127
AsuC2I CCSGG 2 cut(s) 429, 430
AsuHPI GGTGA 2 cut(s) 245, 1304
AsuII TTCGAA 2 cut(s) 268, 1073
AvaI CYCGRG 1 cut(s) 428
AvaII GGWCC 2 cut(s) 892, 1127
BanI GGYRCC 1 cut(s) 1453
BbsI GAAGAC 3 cut(s) 129, 277, 1389
BbvI GCAGC 4 cut(s) 58, 1164, 1560, 1607
BccI CCATC 2 cut(s) 560, 869
BciT130I CCWGG 3 cut(s) 890, 1157, 1263
BciVI GTATCC 1 cut(s) 1560
BclI TGATCA 2 cut(s) 51, 1309
BcnI CCSGG 2 cut(s) 429, 430
BcoDI GTCTC 2 cut(s) 1006, 1059
BcuI ACTAGT 1 cut(s) 1427
BfaI CTAG 5 cut(s) 333, 918, 1104, 1242, 1428
BfuI GTATCC 1 cut(s) 1560
BglII AGATCT 2 cut(s) 343, 641
BisI GCNGC 7 cut(s) 47, 129, 1153, 1484, 1574, 1596, 1651
BlpI GCTNAGC 1 cut(s) 729
BlsI GCNGC 7 cut(s) 48, 130, 1154, 1485, 1575, 1597, 1652
Bme1390I CCNGG 5 cut(s) 429, 430, 890, 1157, 1263
Bme18I GGWCC 2 cut(s) 892, 1127
BmeT110I CYCGRG 1 cut(s) 428
BmgT120I GGNCC 3 cut(s) 736, 892, 1127
BmiI GGNNCC 4 cut(s) 434, 738, 1128, 1455
BmrFI CCNGG 5 cut(s) 429, 430, 890, 1157, 1263
BmsI GCATC 2 cut(s) 540, 1120
BpiI GAAGAC 3 cut(s) 129, 277, 1389
Bpu10I CCTNAGC 1 cut(s) 351
Bpu1102I GCTNAGC 1 cut(s) 729
Bpu14I TTCGAA 2 cut(s) 268, 1073
BpuEI CTTGAG 2 cut(s) 59, 1598
BpuMI CCSGG 2 cut(s) 429, 430
BsaJI CCNNGG 4 cut(s) 427, 428, 809, 1037
BsaWI WCCGGW 1 cut(s) 757
BsaXI ACNNNNNCTCC 2 cut(s) 810, 840
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 815
Bse118I RCCGGY 1 cut(s) 69
Bse1I ACTGG 2 cut(s) 615, 699
Bse3DI GCAATG 2 cut(s) 411, 1186
BseBI CCWGG 3 cut(s) 890, 1157, 1263
BseDI CCNNGG 4 cut(s) 427, 428, 809, 1037
BseGI GGATG 1 cut(s) 1564
BseLI CCNNNNNNNGG 2 cut(s) 171, 815
BseMI GCAATG 2 cut(s) 411, 1186
BseMII CTCAG 3 cut(s) 342, 743, 1070
BseNI ACTGG 2 cut(s) 615, 699
BseRI GAGGAG 1 cut(s) 1635
BseXI GCAGC 4 cut(s) 58, 1164, 1560, 1607
BsgI GTGCAG 2 cut(s) 83, 1171
Bsh1236I CGCG 1 cut(s) 128
BshFI GGCC 1 cut(s) 737
BshNI GGYRCC 1 cut(s) 1453
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 3 cut(s) 70, 429, 758
BslFI GGGAC 2 cut(s) 451, 1140
BslI CCNNNNNNNGG 2 cut(s) 171, 815
BsmAI GTCTC 2 cut(s) 1006, 1059
BsmFI GGGAC 2 cut(s) 451, 1140
BsmI GAATGC 1 cut(s) 203
BsnI GGCC 1 cut(s) 737
BsoBI CYCGRG 1 cut(s) 428
Bsp119I TTCGAA 2 cut(s) 268, 1073
Bsp1407I TGTACA 2 cut(s) 831, 1287
Bsp143I GATC 7 cut(s) 51, 343, 641, 955, 1046, 1309, 1526
Bsp1720I GCTNAGC 1 cut(s) 729
BspACI CCGC 5 cut(s) 128, 131, 1325, 1484, 1507
BspANI GGCC 1 cut(s) 737
BspCNI CTCAG 3 cut(s) 343, 742, 1069
BspFNI CGCG 1 cut(s) 128
BspHI TCATGA 2 cut(s) 691, 1267
BspLI GGNNCC 4 cut(s) 434, 738, 1128, 1455
BspPI GGATC 1 cut(s) 1521
BspT104I TTCGAA 2 cut(s) 268, 1073
BspT107I GGYRCC 1 cut(s) 1453
BsrDI GCAATG 2 cut(s) 411, 1186
BsrFI RCCGGY 1 cut(s) 69
BsrGI TGTACA 2 cut(s) 831, 1287
BsrI ACTGG 2 cut(s) 615, 699
BssAI RCCGGY 1 cut(s) 69
BssECI CCNNGG 4 cut(s) 427, 428, 809, 1037
BssMI GATC 7 cut(s) 51, 343, 641, 955, 1046, 1309, 1526
BssT1I CCWWGG 2 cut(s) 809, 1037
Bst2UI CCWGG 3 cut(s) 890, 1157, 1263
Bst4CI ACNGT 6 cut(s) 222, 284, 446, 465, 1423, 1541
Bst6I CTCTTC 4 cut(s) 380, 843, 1037, 1509
BstAPI GCANNNNNTGC 1 cut(s) 410
BstAUI TGTACA 2 cut(s) 831, 1287
BstBI TTCGAA 2 cut(s) 268, 1073
BstC8I GCNNGC 4 cut(s) 44, 71, 735, 1376
BstDEI CTNAG 4 cut(s) 351, 356, 729, 1056
BstENI CCTNNNNNAGG 1 cut(s) 169
BstF5I GGATG 1 cut(s) 1564
BstFNI CGCG 1 cut(s) 128
BstKTI GATC 7 cut(s) 54, 346, 644, 958, 1049, 1312, 1529
BstMAI GTCTC 2 cut(s) 1006, 1059
BstMBI GATC 7 cut(s) 51, 343, 641, 955, 1046, 1309, 1526
BstMWI GCNNNNNNNGC 7 cut(s) 70, 79, 156, 410, 734, 1152, 1324
BstNI CCWGG 3 cut(s) 890, 1157, 1263
BstSCI CCNGG 5 cut(s) 427, 428, 888, 1155, 1261
BstUI CGCG 1 cut(s) 128
BstV1I GCAGC 4 cut(s) 58, 1164, 1560, 1607
BstV2I GAAGAC 3 cut(s) 129, 277, 1389
BstX2I RGATCY 2 cut(s) 343, 641
BstYI RGATCY 2 cut(s) 343, 641
BsuI GTATCC 1 cut(s) 1560
BsuRI GGCC 1 cut(s) 737
BtsCI GGATG 1 cut(s) 1564
BtsI GCAGTG 2 cut(s) 71, 216
BtsIMutI CAGTG 4 cut(s) 71, 216, 608, 1056
Cac8I GCNNGC 4 cut(s) 44, 71, 735, 1376
CciI TCATGA 2 cut(s) 691, 1267
Cfr10I RCCGGY 1 cut(s) 69
Cfr13I GGNCC 3 cut(s) 736, 892, 1127
Cfr9I CCCGGG 1 cut(s) 428
CseI GACGC 1 cut(s) 134
Csp6I GTAC 2 cut(s) 832, 1288
CspCI CAANNNNNGTGG 2 cut(s) 1227, 1262
CviAII CATG 9 cut(s) 692, 965, 975, 1143, 1167, 1268, 1474, 1559, 1606
CviQI GTAC 2 cut(s) 832, 1288
DdeI CTNAG 4 cut(s) 351, 356, 729, 1056
DpnI GATC 7 cut(s) 53, 345, 643, 957, 1048, 1311, 1528
DpnII GATC 7 cut(s) 51, 343, 641, 955, 1046, 1309, 1526
Eam1104I CTCTTC 4 cut(s) 380, 843, 1037, 1509
EarI CTCTTC 4 cut(s) 380, 843, 1037, 1509
EciI GGCGGA 1 cut(s) 146
Eco130I CCWWGG 2 cut(s) 809, 1037
Eco47I GGWCC 2 cut(s) 892, 1127
Eco57I CTGAAG 3 cut(s) 104, 705, 1450
Eco88I CYCGRG 1 cut(s) 428
EcoNI CCTNNNNNAGG 1 cut(s) 169
EcoO109I RGGNCCY 1 cut(s) 1127
EcoRI GAATTC 1 cut(s) 985
EcoRII CCWGG 3 cut(s) 888, 1155, 1261
EcoT14I CCWWGG 2 cut(s) 809, 1037
EcoT22I ATGCAT 1 cut(s) 203
ErhI CCWWGG 2 cut(s) 809, 1037
FaeI CATG 9 cut(s) 695, 968, 978, 1146, 1170, 1271, 1477, 1562, 1609
FaqI GGGAC 2 cut(s) 451, 1140
FatI CATG 9 cut(s) 691, 964, 974, 1142, 1166, 1267, 1473, 1558, 1605
FbaI TGATCA 2 cut(s) 51, 1309
Fnu4HI GCNGC 7 cut(s) 47, 129, 1153, 1484, 1574, 1596, 1651
FokI GGATG 1 cut(s) 1551
Fsp4HI GCNGC 7 cut(s) 47, 129, 1153, 1484, 1574, 1596, 1651
FspBI CTAG 5 cut(s) 333, 918, 1104, 1242, 1428
GluI GCNGC 7 cut(s) 47, 129, 1153, 1484, 1574, 1596, 1651
HaeIII GGCC 1 cut(s) 737
HapII CCGG 3 cut(s) 70, 429, 758
HgaI GACGC 1 cut(s) 134
Hin1II CATG 9 cut(s) 695, 968, 978, 1146, 1170, 1271, 1477, 1562, 1609
HindIII AAGCTT 2 cut(s) 30, 1376
HinfI GANTC 8 cut(s) 614, 695, 752, 803, 937, 999, 1358, 1494
HpaII CCGG 3 cut(s) 70, 429, 758
HphI GGTGA 2 cut(s) 245, 1304
Hpy166II GTNNAC 5 cut(s) 442, 599, 832, 970, 1288
Hpy188III TCNNGA 8 cut(s) 142, 416, 692, 941, 996, 1058, 1268, 1615
Hpy8I GTNNAC 5 cut(s) 442, 599, 832, 970, 1288
HpyAV CCTTC 6 cut(s) 149, 175, 260, 574, 662, 1069
HpyCH4III ACNGT 6 cut(s) 222, 284, 446, 465, 1423, 1541
HpyCH4IV ACGT 2 cut(s) 385, 1624
HpyF10VI GCNNNNNNNGC 7 cut(s) 70, 79, 156, 410, 734, 1152, 1324
HpyF3I CTNAG 4 cut(s) 351, 356, 729, 1056
HpySE526I ACGT 2 cut(s) 385, 1624
Hsp92II CATG 9 cut(s) 695, 968, 978, 1146, 1170, 1271, 1477, 1562, 1609
KroI GCCGGC 1 cut(s) 69
KroNI GCCGGC 1 cut(s) 71
Ksp22I TGATCA 2 cut(s) 51, 1309
Kzo9I GATC 7 cut(s) 51, 343, 641, 955, 1046, 1309, 1526
LmnI GCTCC 1 cut(s) 133
Lsp1109I GCAGC 4 cut(s) 58, 1164, 1560, 1607
LweI GCATC 2 cut(s) 540, 1120
MaeI CTAG 5 cut(s) 333, 918, 1104, 1242, 1428
MaeII ACGT 2 cut(s) 385, 1624
MaeIII GTNAC 3 cut(s) 478, 1094, 1423
MalI GATC 7 cut(s) 53, 345, 643, 957, 1048, 1311, 1528
MboI GATC 7 cut(s) 51, 343, 641, 955, 1046, 1309, 1526
MfeI CAATTG 1 cut(s) 113
MflI RGATCY 2 cut(s) 343, 641
MlyI GAGTC 3 cut(s) 746, 1008, 1503
MmeI TCCRAC 3 cut(s) 204, 1235, 1442
Mph1103I ATGCAT 1 cut(s) 203
MroNI GCCGGC 1 cut(s) 69
MroXI GAANNNNTTC 4 cut(s) 31, 687, 852, 1518
MseI TTAA 1 cut(s) 1663
MslI CAYNNNNRTG 2 cut(s) 1147, 1478
MspA1I CMGCKG 3 cut(s) 49, 733, 1486
MspI CCGG 3 cut(s) 70, 429, 758
MspR9I CCNGG 5 cut(s) 429, 430, 890, 1157, 1263
MunI CAATTG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 203
MvaI CCWGG 3 cut(s) 890, 1157, 1263
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 7 cut(s) 70, 79, 156, 410, 734, 1152, 1324
NaeI GCCGGC 1 cut(s) 71
NciI CCSGG 2 cut(s) 429, 430
NdeII GATC 7 cut(s) 51, 343, 641, 955, 1046, 1309, 1526
NgoMIV GCCGGC 1 cut(s) 69
NlaIII CATG 9 cut(s) 695, 968, 978, 1146, 1170, 1271, 1477, 1562, 1609
NlaIV GGNNCC 4 cut(s) 434, 738, 1128, 1455
NmuCI GTSAC 1 cut(s) 1423
NsiI ATGCAT 1 cut(s) 203
NspV TTCGAA 2 cut(s) 268, 1073
PagI TCATGA 2 cut(s) 691, 1267
PctI GAATGC 1 cut(s) 203
PdiI GCCGGC 1 cut(s) 71
PdmI GAANNNNTTC 4 cut(s) 31, 687, 852, 1518
PfeI GAWTC 5 cut(s) 614, 695, 803, 937, 1358
PflMI CCANNNNNTGG 1 cut(s) 815
PkrI GCNGC 7 cut(s) 48, 130, 1154, 1485, 1575, 1597, 1652
PleI GAGTC 3 cut(s) 746, 1007, 1502
PpsI GAGTC 3 cut(s) 746, 1007, 1502
PpuMI RGGWCCY 1 cut(s) 1127
Psp1406I AACGTT 1 cut(s) 385
Psp5II RGGWCCY 1 cut(s) 1127
Psp6I CCWGG 3 cut(s) 888, 1155, 1261
PspGI CCWGG 3 cut(s) 888, 1155, 1261
PspN4I GGNNCC 4 cut(s) 434, 738, 1128, 1455
PspPI GGNCC 3 cut(s) 736, 892, 1127
PspPPI RGGWCCY 1 cut(s) 1127
PsuI RGATCY 2 cut(s) 343, 641
PvuII CAGCTG 2 cut(s) 49, 733
RsaI GTAC 2 cut(s) 833, 1289
RsaNI GTAC 2 cut(s) 832, 1288
RseI CAYNNNNRTG 2 cut(s) 1147, 1478
SaqAI TTAA 1 cut(s) 1663
SatI GCNGC 7 cut(s) 47, 129, 1153, 1484, 1574, 1596, 1651
Sau3AI GATC 7 cut(s) 51, 343, 641, 955, 1046, 1309, 1526
Sau96I GGNCC 3 cut(s) 736, 892, 1127
SchI GAGTC 3 cut(s) 746, 1008, 1503
ScrFI CCNGG 5 cut(s) 429, 430, 890, 1157, 1263
SfaNI GCATC 2 cut(s) 540, 1120
SfuI TTCGAA 2 cut(s) 268, 1073
SinI GGWCC 2 cut(s) 892, 1127
SmaI CCCGGG 1 cut(s) 430
SmiMI CAYNNNNRTG 2 cut(s) 1147, 1478
SmlI CTYRAG 2 cut(s) 74, 1613
SmoI CTYRAG 2 cut(s) 74, 1613
SpeI ACTAGT 1 cut(s) 1427
SsiI CCGC 5 cut(s) 128, 131, 1325, 1484, 1507
SspMI CTAG 5 cut(s) 333, 918, 1104, 1242, 1428
StyD4I CCNGG 5 cut(s) 427, 428, 888, 1155, 1261
StyI CCWWGG 2 cut(s) 809, 1037
TaaI ACNGT 6 cut(s) 222, 284, 446, 465, 1423, 1541
TaiI ACGT 2 cut(s) 388, 1627
TaqI TCGA 4 cut(s) 268, 555, 666, 1073
TatI WGTACW 2 cut(s) 831, 1287
TauI GCSGC 2 cut(s) 131, 1486
TfiI GAWTC 5 cut(s) 614, 695, 803, 937, 1358
Tru1I TTAA 1 cut(s) 1663
Tru9I TTAA 1 cut(s) 1663
TscAI CASTG 4 cut(s) 71, 216, 615, 1056
TseFI GTSAC 1 cut(s) 1423
TseI GCWGC 5 cut(s) 46, 1152, 1573, 1595, 1650
Tsp45I GTSAC 1 cut(s) 1423
TspMI CCCGGG 1 cut(s) 428
TspRI CASTG 4 cut(s) 71, 216, 615, 1056
Van91I CCANNNNNTGG 1 cut(s) 815
VpaK11BI GGWCC 2 cut(s) 892, 1127
XagI CCTNNNNNAGG 1 cut(s) 169
XapI RAATTY 6 cut(s) 239, 654, 985, 1085, 1199, 1601
XmaI CCCGGG 1 cut(s) 428
XmnI GAANNNNTTC 4 cut(s) 31, 687, 852, 1518
XspI CTAG 5 cut(s) 333, 918, 1104, 1242, 1428
Zsp2I ATGCAT 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.