Rw2G046690

Regulator of Vps4 activity in the MVB pathway

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
73976429 .. 73979299
2871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G046690.1

Sequence Viewer

Length: 1659 bp
ATGTTTGGCATATTGTTCGGGTGGAGAAAAGCTTCAAAGTGCAAGCAGCTGATTAAACAGGTGCAGTGCCGGCTCAAGTTGCTGAAGAACAAGAGGGCTACTATTGTGAGGCAATTGCGAGAAGACGCGGCGGAGCTGATCAAGAATGGCTACGAAGGCAAAGCCTTCAATAGGGTTGAGCAGATAATCAAAGATGAATGCATAGTGGCAGTGTATGAACTGTTGGATAATTTCTGTGAATTTATCCTCCTCCACCTTTCATATATCCGAAGACACAAGGACTGTCCAAATGACATAAATGAAGCAGTTTCAAGTCTTATATATGCTTCTGCTAGATGTGGAGATCTCCCTGAGCTTAGAACAATCCGAAAGCTCTTCGGAGAACGTTATGGTCAGAAATATGCAATGACTGCTCTTGAACTATTCCCCGGGAACCTTGTGAACTGTCAGGTAATAGAGAAACTGTCCCTAAAGTCAGTAACAGATGATATGAAGCACAGATTGGTCAATGAAATAACAAGGAATTACTGCATCAAACCAGAGGTTTTAGCCATCGAATACTATTCCGATTGGCAACAGAAGGTAAAGGAAATTAGTGGACATCAAGCACTGGATTCAAATGTTCGGACTTACTATGAGAGATCTGAAATGCAAATTTGCTCTGTCGAAGGGCTTGAAACAGAAGATGTTCATGATTCCAGTATATCTACTACTACTTCAGTAGCTAAGCTGGCCCCGACTGTATCAGACTCTCCGGTGCATAATGAAATACATGAAGAACAGGACTTTGCTGAAGTGGATTCTCCAAGGGGTGGAGAAATAGTGGTGTACAATGATGACATTGAAGAGGTTCAGTCTTGCACAACAAGAGATGGAGATGACTGCCAGGACCAAAGAGCTTTCAAGTTCAAAGCTAGTGTTCCGAAAAAGGAGAATCTTGAAAACAGCTTTGATCGTGGTCATATGAACACATGGAGTGTGAATTCAGGGTCAAGAGTCTCTACGAGAAGTTTTGGGGGAAATGGGAAAAGACCAAGGAAGAGATCAGTGTCTCAGGAAAATCAGTTTTTGAAGGATAGTAAATTTCCAAGTCACTATGCTAGGAAGCATCAGAAGAAATTGGGACCTAACATTTTGTCATGCAAGTGCAGCCTAGTAAATCCATGTTATGTTTGCAATGGGAATGAAAATGTCGAATTTGAAGTTCCAACATTGAAGCAAAATAGAGGGATTTCAAATAGGGTGGGATTTGTTAATCCTGGTCATGAACATAAAAGTTTGGTGTACAATGTTTTCACTTACCCTGATCACCAGCCAAAACCGCAAAGCAAAGTGTTCAAAGGAAACATAGAGGAATCTGGTTTTCAATGCAAGCTTCCCTCTTATACTTCGTCTTCATCATCATCATCTTCTCCAACTGTGACTAGTTCTTGGACGAGAAAAGAAATGGTACCTCCTTACTTCAGAAATGTGACAATGCCGCCGGAAAGAGTCAACGACAAGCGGAAAGAAGAGTTTCAACGATCCATTTCGGACTGTTTTCAGTTTCCTACTCATGTTCATCCAAAGCTGCCAGATTATGATGATATTGCAGCTAAATTCATGGCTCTCAAGAAAGAACGTCTGCAAACTAAGCCTCCTCTCAGCAATCAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

552

Amino Acids

63.21

Weight (kDa)

8.65

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ist1 PF03398 15 - 178 2.2e-50 Regulator of Vps4 activity in the MVB pathway
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013512)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1450
AccB1I GGYRCC 1 cut(s) 1450
AccB7I CCANNNNNTGG 1 cut(s) 812
AccII CGCG 1 cut(s) 128
AciI CCGC 5 cut(s) 128, 131, 1322, 1481, 1504
AclI AACGTT 1 cut(s) 385
AclWI GGATC 1 cut(s) 1518
AcsI RAATTY 6 cut(s) 239, 654, 982, 1082, 1196, 1598
AcuI CTGAAG 4 cut(s) 104, 702, 813, 1447
AfaI GTAC 3 cut(s) 830, 1286, 1452
AfiI CCNNNNNNNGG 2 cut(s) 171, 812
AhlI ACTAGT 1 cut(s) 1424
AjnI CCWGG 2 cut(s) 885, 1258
AjuI GAANNNNNNNTTGG 2 cut(s) 485, 517
Alw26I GTCTC 2 cut(s) 1003, 1056
AlwI GGATC 1 cut(s) 1518
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 1 cut(s) 732
ApeKI GCWGC 4 cut(s) 46, 1149, 1570, 1592
ApoI RAATTY 6 cut(s) 239, 654, 982, 1082, 1196, 1598
Asp700I GAANNNNTTC 4 cut(s) 31, 687, 849, 1515
Asp718I GGTACC 1 cut(s) 1450
AspS9I GGNCC 3 cut(s) 733, 889, 1124
AsuC2I CCSGG 2 cut(s) 429, 430
AsuHPI GGTGA 1 cut(s) 1301
AvaI CYCGRG 1 cut(s) 428
AvaII GGWCC 2 cut(s) 889, 1124
BanI GGYRCC 1 cut(s) 1450
BbsI GAAGAC 3 cut(s) 129, 277, 1386
BbvI GCAGC 4 cut(s) 58, 1161, 1557, 1604
BccI CCATC 2 cut(s) 560, 866
BcgI CGANNNNNNTGC 1 cut(s) 32
BciT130I CCWGG 2 cut(s) 887, 1260
BclI TGATCA 2 cut(s) 138, 1306
BcnI CCSGG 2 cut(s) 429, 430
BcoDI GTCTC 2 cut(s) 1003, 1056
BcuI ACTAGT 1 cut(s) 1424
BfaI CTAG 5 cut(s) 333, 915, 1101, 1154, 1425
BglII AGATCT 2 cut(s) 343, 641
BisI GCNGC 6 cut(s) 47, 129, 1150, 1481, 1571, 1593
BlpI GCTNAGC 1 cut(s) 726
BlsI GCNGC 6 cut(s) 48, 130, 1151, 1482, 1572, 1594
Bme1390I CCNGG 4 cut(s) 429, 430, 887, 1260
Bme18I GGWCC 2 cut(s) 889, 1124
BmeT110I CYCGRG 1 cut(s) 428
BmgT120I GGNCC 3 cut(s) 733, 889, 1124
BmiI GGNNCC 4 cut(s) 434, 735, 1125, 1452
BmrFI CCNGG 4 cut(s) 429, 430, 887, 1260
BmsI GCATC 2 cut(s) 540, 1117
BpiI GAAGAC 3 cut(s) 129, 277, 1386
Bpu10I CCTNAGC 1 cut(s) 351
Bpu1102I GCTNAGC 1 cut(s) 726
BpuEI CTTGAG 2 cut(s) 59, 1595
BpuMI CCSGG 2 cut(s) 429, 430
BsaJI CCNNGG 4 cut(s) 427, 428, 806, 1034
BsaWI WCCGGW 1 cut(s) 754
BsaXI ACNNNNNCTCC 4 cut(s) 807, 837, 1621, 1651
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 812
Bse118I RCCGGY 1 cut(s) 69
Bse1I ACTGG 2 cut(s) 615, 699
Bse3DI GCAATG 2 cut(s) 411, 1183
BseBI CCWGG 2 cut(s) 887, 1260
BseDI CCNNGG 4 cut(s) 427, 428, 806, 1034
BseGI GGATG 1 cut(s) 1561
BseLI CCNNNNNNNGG 2 cut(s) 171, 812
BseMI GCAATG 2 cut(s) 411, 1183
BseMII CTCAG 3 cut(s) 342, 1067, 1657
BseNI ACTGG 2 cut(s) 615, 699
BseRI GAGGAG 2 cut(s) 239, 1629
BseXI GCAGC 4 cut(s) 58, 1161, 1557, 1604
BsgI GTGCAG 2 cut(s) 83, 1168
Bsh1236I CGCG 1 cut(s) 128
BshFI GGCC 1 cut(s) 734
BshNI GGYRCC 1 cut(s) 1450
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 4 cut(s) 70, 429, 755, 1484
BslFI GGGAC 2 cut(s) 451, 1137
BslI CCNNNNNNNGG 2 cut(s) 171, 812
BsmAI GTCTC 2 cut(s) 1003, 1056
BsmFI GGGAC 2 cut(s) 451, 1137
BsmI GAATGC 1 cut(s) 203
BsnI GGCC 1 cut(s) 734
BsoBI CYCGRG 1 cut(s) 428
Bsp1407I TGTACA 2 cut(s) 828, 1284
Bsp143I GATC 7 cut(s) 138, 343, 641, 952, 1043, 1306, 1523
Bsp1720I GCTNAGC 1 cut(s) 726
BspACI CCGC 5 cut(s) 128, 131, 1322, 1481, 1504
BspANI GGCC 1 cut(s) 734
BspCNI CTCAG 3 cut(s) 343, 1066, 1656
BspFNI CGCG 1 cut(s) 128
BspHI TCATGA 2 cut(s) 691, 1264
BspLI GGNNCC 4 cut(s) 434, 735, 1125, 1452
BspPI GGATC 1 cut(s) 1518
BspQI GCTCTTC 1 cut(s) 380
BspT107I GGYRCC 1 cut(s) 1450
BsrDI GCAATG 2 cut(s) 411, 1183
BsrFI RCCGGY 1 cut(s) 69
BsrGI TGTACA 2 cut(s) 828, 1284
BsrI ACTGG 2 cut(s) 615, 699
BssAI RCCGGY 1 cut(s) 69
BssECI CCNNGG 4 cut(s) 427, 428, 806, 1034
BssMI GATC 7 cut(s) 138, 343, 641, 952, 1043, 1306, 1523
BssT1I CCWWGG 2 cut(s) 806, 1034
Bst2UI CCWGG 2 cut(s) 887, 1260
Bst4CI ACNGT 7 cut(s) 222, 284, 446, 465, 742, 1420, 1538
Bst6I CTCTTC 4 cut(s) 380, 840, 1034, 1506
BstAPI GCANNNNNTGC 1 cut(s) 410
BstAUI TGTACA 2 cut(s) 828, 1284
BstC8I GCNNGC 4 cut(s) 44, 71, 732, 1373
BstDEI CTNAG 6 cut(s) 351, 356, 726, 1053, 1632, 1643
BstENI CCTNNNNNAGG 1 cut(s) 169
BstF5I GGATG 1 cut(s) 1561
BstFNI CGCG 1 cut(s) 128
BstKTI GATC 7 cut(s) 141, 346, 644, 955, 1046, 1309, 1526
BstMAI GTCTC 2 cut(s) 1003, 1056
BstMBI GATC 7 cut(s) 138, 343, 641, 952, 1043, 1306, 1523
BstMWI GCNNNNNNNGC 8 cut(s) 70, 79, 156, 410, 731, 1149, 1321, 1633
BstNI CCWGG 2 cut(s) 887, 1260
BstSCI CCNGG 4 cut(s) 427, 428, 885, 1258
BstUI CGCG 1 cut(s) 128
BstV1I GCAGC 4 cut(s) 58, 1161, 1557, 1604
BstV2I GAAGAC 3 cut(s) 129, 277, 1386
BstX2I RGATCY 2 cut(s) 343, 641
BstYI RGATCY 2 cut(s) 343, 641
BsuRI GGCC 1 cut(s) 734
BtsCI GGATG 1 cut(s) 1561
BtsI GCAGTG 2 cut(s) 71, 216
BtsIMutI CAGTG 4 cut(s) 71, 216, 608, 1053
Cac8I GCNNGC 4 cut(s) 44, 71, 732, 1373
CciI TCATGA 2 cut(s) 691, 1264
Cfr10I RCCGGY 1 cut(s) 69
Cfr13I GGNCC 3 cut(s) 733, 889, 1124
Cfr9I CCCGGG 1 cut(s) 428
CseI GACGC 1 cut(s) 134
Csp6I GTAC 3 cut(s) 829, 1285, 1451
CspCI CAANNNNNGTGG 2 cut(s) 1224, 1259
CviAII CATG 8 cut(s) 692, 773, 972, 1140, 1164, 1265, 1556, 1603
CviQI GTAC 3 cut(s) 829, 1285, 1451
DdeI CTNAG 6 cut(s) 351, 356, 726, 1053, 1632, 1643
DpnI GATC 7 cut(s) 140, 345, 643, 954, 1045, 1308, 1525
DpnII GATC 7 cut(s) 138, 343, 641, 952, 1043, 1306, 1523
Eam1104I CTCTTC 4 cut(s) 380, 840, 1034, 1506
EarI CTCTTC 4 cut(s) 380, 840, 1034, 1506
EciI GGCGGA 1 cut(s) 146
Eco130I CCWWGG 2 cut(s) 806, 1034
Eco47I GGWCC 2 cut(s) 889, 1124
Eco57I CTGAAG 4 cut(s) 104, 702, 813, 1447
Eco88I CYCGRG 1 cut(s) 428
EcoNI CCTNNNNNAGG 1 cut(s) 169
EcoO109I RGGNCCY 1 cut(s) 1124
EcoRI GAATTC 1 cut(s) 982
EcoRII CCWGG 2 cut(s) 885, 1258
EcoT14I CCWWGG 2 cut(s) 806, 1034
EcoT22I ATGCAT 1 cut(s) 203
ErhI CCWWGG 2 cut(s) 806, 1034
FaeI CATG 8 cut(s) 695, 776, 975, 1143, 1167, 1268, 1559, 1606
FaqI GGGAC 2 cut(s) 451, 1137
FatI CATG 8 cut(s) 691, 772, 971, 1139, 1163, 1264, 1555, 1602
FauNDI CATATG 1 cut(s) 963
FbaI TGATCA 2 cut(s) 138, 1306
Fnu4HI GCNGC 6 cut(s) 47, 129, 1150, 1481, 1571, 1593
FokI GGATG 1 cut(s) 1548
Fsp4HI GCNGC 6 cut(s) 47, 129, 1150, 1481, 1571, 1593
FspBI CTAG 5 cut(s) 333, 915, 1101, 1154, 1425
GluI GCNGC 6 cut(s) 47, 129, 1150, 1481, 1571, 1593
HaeIII GGCC 1 cut(s) 734
HapII CCGG 4 cut(s) 70, 429, 755, 1484
HgaI GACGC 1 cut(s) 134
Hin1II CATG 8 cut(s) 695, 776, 975, 1143, 1167, 1268, 1559, 1606
HincII GTYRAC 1 cut(s) 1495
HindII GTYRAC 1 cut(s) 1495
HindIII AAGCTT 2 cut(s) 30, 1373
HinfI GANTC 8 cut(s) 614, 695, 749, 800, 934, 996, 1355, 1491
HpaII CCGG 4 cut(s) 70, 429, 755, 1484
HphI GGTGA 1 cut(s) 1301
Hpy166II GTNNAC 5 cut(s) 442, 599, 829, 1285, 1495
Hpy188III TCNNGA 8 cut(s) 142, 416, 692, 938, 993, 1055, 1265, 1612
Hpy8I GTNNAC 5 cut(s) 442, 599, 829, 1285, 1495
HpyAV CCTTC 5 cut(s) 149, 175, 574, 662, 1066
HpyCH4III ACNGT 7 cut(s) 222, 284, 446, 465, 742, 1420, 1538
HpyCH4IV ACGT 2 cut(s) 385, 1621
HpyF10VI GCNNNNNNNGC 8 cut(s) 70, 79, 156, 410, 731, 1149, 1321, 1633
HpyF3I CTNAG 6 cut(s) 351, 356, 726, 1053, 1632, 1643
HpySE526I ACGT 2 cut(s) 385, 1621
Hsp92II CATG 8 cut(s) 695, 776, 975, 1143, 1167, 1268, 1559, 1606
KpnI GGTACC 1 cut(s) 1454
KroI GCCGGC 1 cut(s) 69
KroNI GCCGGC 1 cut(s) 71
Ksp22I TGATCA 2 cut(s) 138, 1306
Kzo9I GATC 7 cut(s) 138, 343, 641, 952, 1043, 1306, 1523
LguI GCTCTTC 1 cut(s) 380
LmnI GCTCC 1 cut(s) 133
Lsp1109I GCAGC 4 cut(s) 58, 1161, 1557, 1604
LweI GCATC 2 cut(s) 540, 1117
MaeI CTAG 5 cut(s) 333, 915, 1101, 1154, 1425
MaeII ACGT 2 cut(s) 385, 1621
MaeIII GTNAC 4 cut(s) 478, 1091, 1420, 1471
MalI GATC 7 cut(s) 140, 345, 643, 954, 1045, 1308, 1525
MboI GATC 7 cut(s) 138, 343, 641, 952, 1043, 1306, 1523
MfeI CAATTG 1 cut(s) 113
MflI RGATCY 2 cut(s) 343, 641
MlyI GAGTC 3 cut(s) 743, 1005, 1500
MmeI TCCRAC 3 cut(s) 204, 1232, 1439
Mph1103I ATGCAT 1 cut(s) 203
MroNI GCCGGC 1 cut(s) 69
MroXI GAANNNNTTC 4 cut(s) 31, 687, 849, 1515
MseI TTAA 2 cut(s) 54, 1254
MslI CAYNNNNRTG 1 cut(s) 1144
MspA1I CMGCKG 1 cut(s) 49
MspI CCGG 4 cut(s) 70, 429, 755, 1484
MspR9I CCNGG 4 cut(s) 429, 430, 887, 1260
MunI CAATTG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 203
MvaI CCWGG 2 cut(s) 887, 1260
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 8 cut(s) 70, 79, 156, 410, 731, 1149, 1321, 1633
NaeI GCCGGC 1 cut(s) 71
NciI CCSGG 2 cut(s) 429, 430
NdeI CATATG 1 cut(s) 963
NdeII GATC 7 cut(s) 138, 343, 641, 952, 1043, 1306, 1523
NgoMIV GCCGGC 1 cut(s) 69
NlaIII CATG 8 cut(s) 695, 776, 975, 1143, 1167, 1268, 1559, 1606
NlaIV GGNNCC 4 cut(s) 434, 735, 1125, 1452
NmuCI GTSAC 3 cut(s) 1091, 1420, 1471
NsiI ATGCAT 1 cut(s) 203
PagI TCATGA 2 cut(s) 691, 1264
PciSI GCTCTTC 1 cut(s) 380
PctI GAATGC 1 cut(s) 203
PdiI GCCGGC 1 cut(s) 71
PdmI GAANNNNTTC 4 cut(s) 31, 687, 849, 1515
PfeI GAWTC 5 cut(s) 614, 695, 800, 934, 1355
PflMI CCANNNNNTGG 1 cut(s) 812
PkrI GCNGC 6 cut(s) 48, 130, 1151, 1482, 1572, 1594
PleI GAGTC 3 cut(s) 743, 1004, 1499
PpsI GAGTC 3 cut(s) 743, 1004, 1499
PpuMI RGGWCCY 1 cut(s) 1124
Psp1406I AACGTT 1 cut(s) 385
Psp5II RGGWCCY 1 cut(s) 1124
Psp6I CCWGG 2 cut(s) 885, 1258
PspGI CCWGG 2 cut(s) 885, 1258
PspN4I GGNNCC 4 cut(s) 434, 735, 1125, 1452
PspPI GGNCC 3 cut(s) 733, 889, 1124
PspPPI RGGWCCY 1 cut(s) 1124
PsuI RGATCY 2 cut(s) 343, 641
PvuII CAGCTG 1 cut(s) 49
RsaI GTAC 3 cut(s) 830, 1286, 1452
RsaNI GTAC 3 cut(s) 829, 1285, 1451
RseI CAYNNNNRTG 1 cut(s) 1144
SapI GCTCTTC 1 cut(s) 380
SaqAI TTAA 2 cut(s) 54, 1254
SatI GCNGC 6 cut(s) 47, 129, 1150, 1481, 1571, 1593
Sau3AI GATC 7 cut(s) 138, 343, 641, 952, 1043, 1306, 1523
Sau96I GGNCC 3 cut(s) 733, 889, 1124
SchI GAGTC 3 cut(s) 743, 1005, 1500
ScrFI CCNGG 4 cut(s) 429, 430, 887, 1260
SfaNI GCATC 2 cut(s) 540, 1117
SinI GGWCC 2 cut(s) 889, 1124
SmaI CCCGGG 1 cut(s) 430
SmiMI CAYNNNNRTG 1 cut(s) 1144
SmlI CTYRAG 2 cut(s) 74, 1610
SmoI CTYRAG 2 cut(s) 74, 1610
SpeI ACTAGT 1 cut(s) 1424
SsiI CCGC 5 cut(s) 128, 131, 1322, 1481, 1504
SspMI CTAG 5 cut(s) 333, 915, 1101, 1154, 1425
StyD4I CCNGG 4 cut(s) 427, 428, 885, 1258
StyI CCWWGG 2 cut(s) 806, 1034
TaaI ACNGT 7 cut(s) 222, 284, 446, 465, 742, 1420, 1538
TaiI ACGT 2 cut(s) 388, 1624
TaqI TCGA 3 cut(s) 555, 666, 1194
TatI WGTACW 2 cut(s) 828, 1284
TauI GCSGC 2 cut(s) 131, 1483
TfiI GAWTC 5 cut(s) 614, 695, 800, 934, 1355
Tru1I TTAA 2 cut(s) 54, 1254
Tru9I TTAA 2 cut(s) 54, 1254
TscAI CASTG 4 cut(s) 71, 216, 615, 1053
TseFI GTSAC 3 cut(s) 1091, 1420, 1471
TseI GCWGC 4 cut(s) 46, 1149, 1570, 1592
Tsp45I GTSAC 3 cut(s) 1091, 1420, 1471
TspMI CCCGGG 1 cut(s) 428
TspRI CASTG 4 cut(s) 71, 216, 615, 1053
Van91I CCANNNNNTGG 1 cut(s) 812
VpaK11BI GGWCC 2 cut(s) 889, 1124
XagI CCTNNNNNAGG 1 cut(s) 169
XapI RAATTY 6 cut(s) 239, 654, 982, 1082, 1196, 1598
XmaI CCCGGG 1 cut(s) 428
XmnI GAANNNNTTC 4 cut(s) 31, 687, 849, 1515
XspI CTAG 5 cut(s) 333, 915, 1101, 1154, 1425
Zsp2I ATGCAT 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.