RLG00000029712

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0012691
Physical Location & Seq
Reverse (-)
43899725 .. 43900610
886 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029712

Sequence Viewer

Length: 720 bp
ATGAAAACTACCGGCGGTCCCATCCGCTGCCCGTTTTGCTTATATGTGTTAAACGATAGAACCCACAAGTTGCATGTTTGTACGGCACCTCAGATATTTTCCAGCAGCAAGAACCAGGTAGAGGATGATTTTCAGTCCGATGATTCCCGGAGGCGTTCTCAACAATTCATCGATCTTGAGAAAGGTCACGGAGCTGGAGATGATAACGTCGGCGAGCACCTAACCGGAAATTCTTGGGGGCATTTCGTTCAGTCAGACGTCGAGAGCTCTGGTACAGATCTACGACATTACAACCGCAAGCAGAGGCCTCTTAAAGAAGCCGACGATCTGAAGAAAGGGAGAGAGGGAGTCGGTTCTGACGTTCGTAACGGTGGCCAGAGCTCGGGTACCAAAAATGCACACCAAGATCAGAGGAGTCACGAAGAAAAGTTGGATCTTGAGGAAGGTGGGCAAATCCGTGGTGGTGCTAAAGCGCCTGCTCGGGATTTCTTGCAGCGTTTTTGGCCCAAGCGTGTGGCTCCTGGTCGTCTCGTCGATACAGCTTTTGAAGGAGGCACCAACGCCCTAGACGCAACTCGCGTACCTTGTCGTGGCGGCCACGGCCGTGACATTGCGGCTCGGTGCTATGGGAATCCAGGAGAGAATATGGTTGCATTACACAATTGGGTTTTTCTGGTCGTTTTCAAACGGGATTATATTATGTATTTCATGTCACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

26.72

Weight (kDa)

8.26

Isoelectric Point (pI)

45.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 261
Acc65I GGTACC 1 cut(s) 386
AccB1I GGYRCC 3 cut(s) 85, 386, 554
AccII CGCG 1 cut(s) 579
AciI CCGC 5 cut(s) 15, 25, 295, 594, 614
AclWI GGATC 1 cut(s) 441
AcoI YGGCCR 3 cut(s) 373, 595, 601
AcsI RAATTY 1 cut(s) 229
AcuI CTGAAG 1 cut(s) 350
AcyI GRCGYC 1 cut(s) 258
AfaI GTAC 4 cut(s) 82, 274, 388, 582
AfiI CCNNNNNNNGG 3 cut(s) 121, 382, 590
AgsI TTSAA 2 cut(s) 548, 685
AjnI CCWGG 3 cut(s) 114, 520, 634
AleI CACNNNNGTG 1 cut(s) 603
AluBI AGCT 4 cut(s) 194, 267, 381, 542
AluI AGCT 4 cut(s) 194, 267, 381, 542
Alw21I GWGCWC 3 cut(s) 219, 269, 383
Alw26I GTCTC 1 cut(s) 533
AlwI GGATC 1 cut(s) 441
Ama87I CYCGRG 2 cut(s) 382, 480
AoxI GGCC 5 cut(s) 305, 373, 503, 595, 601
ApeKI GCWGC 3 cut(s) 27, 105, 493
ApoI RAATTY 1 cut(s) 229
Asp718I GGTACC 1 cut(s) 386
AspLEI GCGC 1 cut(s) 475
AspS9I GGNCC 2 cut(s) 17, 504
AsuC2I CCSGG 1 cut(s) 148
AvaI CYCGRG 2 cut(s) 382, 480
AvaII GGWCC 1 cut(s) 17
BaeI ACNNNNGTAYC 2 cut(s) 564, 597
BalI TGGCCA 1 cut(s) 375
BanI GGYRCC 3 cut(s) 85, 386, 554
BanII GRGCYC 2 cut(s) 269, 383
Bbv12I GWGCWC 3 cut(s) 219, 269, 383
BbvI GCAGC 3 cut(s) 14, 117, 505
BccI CCATC 1 cut(s) 29
BceAI ACGGC 3 cut(s) 99, 588, 616
BciT130I CCWGG 3 cut(s) 116, 522, 636
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 533
BfaI CTAG 1 cut(s) 566
BfoI RGCGCY 1 cut(s) 476
BglII AGATCT 1 cut(s) 277
BisI GCNGC 5 cut(s) 28, 106, 494, 595, 615
BlsI GCNGC 5 cut(s) 29, 107, 495, 596, 616
Bme1390I CCNGG 4 cut(s) 116, 148, 522, 636
Bme18I GGWCC 1 cut(s) 17
BmeT110I CYCGRG 2 cut(s) 382, 480
BmgT120I GGNCC 2 cut(s) 17, 504
BmiI GGNNCC 5 cut(s) 19, 87, 388, 519, 556
BmrFI CCNGG 4 cut(s) 116, 148, 522, 636
BplI GAGNNNNNCTC 2 cut(s) 142, 174
BpmI CTGGAG 1 cut(s) 216
BpuEI CTTGAG 2 cut(s) 197, 458
BpuMI CCSGG 1 cut(s) 148
Bsa29I ATCGAT 1 cut(s) 171
BsaHI GRCGYC 1 cut(s) 258
BsaJI CCNNGG 2 cut(s) 457, 598
BsaWI WCCGGW 1 cut(s) 224
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 382, 590
Bse118I RCCGGY 1 cut(s) 11
Bse3DI GCAATG 1 cut(s) 609
BseBI CCWGG 3 cut(s) 116, 522, 636
BseCI ATCGAT 1 cut(s) 171
BseDI CCNNGG 2 cut(s) 457, 598
BseGI GGATG 2 cut(s) 21, 130
BseLI CCNNNNNNNGG 3 cut(s) 121, 382, 590
BseMI GCAATG 1 cut(s) 609
BseMII CTCAG 1 cut(s) 104
BseRI GAGGAG 1 cut(s) 427
BseX3I CGGCCG 1 cut(s) 601
BseXI GCAGC 3 cut(s) 14, 117, 505
Bsh1236I CGCG 1 cut(s) 579
Bsh1285I CGRYCG 1 cut(s) 604
BshFI GGCC 5 cut(s) 307, 375, 505, 597, 603
BshNI GGYRCC 3 cut(s) 85, 386, 554
BshVI ATCGAT 1 cut(s) 171
BsiEI CGRYCG 1 cut(s) 604
BsiHKAI GWGCWC 3 cut(s) 219, 269, 383
BsiHKCI CYCGRG 2 cut(s) 382, 480
BsiSI CCGG 3 cut(s) 12, 148, 225
BslFI GGGAC 1 cut(s) 3
BslI CCNNNNNNNGG 3 cut(s) 121, 382, 590
BsmAI GTCTC 1 cut(s) 533
BsmBI CGTCTC 1 cut(s) 533
BsmFI GGGAC 1 cut(s) 3
BsnI GGCC 5 cut(s) 307, 375, 505, 597, 603
BsoBI CYCGRG 2 cut(s) 382, 480
Bsp1286I GDGCHC 3 cut(s) 219, 269, 383
Bsp143I GATC 5 cut(s) 172, 277, 325, 406, 433
BspACI CCGC 5 cut(s) 15, 25, 295, 594, 614
BspANI GGCC 5 cut(s) 307, 375, 505, 597, 603
BspCNI CTCAG 1 cut(s) 103
BspDI ATCGAT 1 cut(s) 171
BspFNI CGCG 1 cut(s) 579
BspLI GGNNCC 5 cut(s) 19, 87, 388, 519, 556
BspPI GGATC 1 cut(s) 441
BspT107I GGYRCC 3 cut(s) 85, 386, 554
BsrDI GCAATG 1 cut(s) 609
BsrFI RCCGGY 1 cut(s) 11
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 2 cut(s) 457, 598
BssMI GATC 5 cut(s) 172, 277, 325, 406, 433
BssNI GRCGYC 1 cut(s) 258
Bst2UI CCWGG 3 cut(s) 116, 522, 636
Bst4CI ACNGT 2 cut(s) 371, 717
BstACI GRCGYC 1 cut(s) 258
BstC8I GCNNGC 3 cut(s) 215, 299, 477
BstDEI CTNAG 1 cut(s) 90
BstDSI CCRYGG 2 cut(s) 457, 598
BstF5I GGATG 2 cut(s) 21, 130
BstFNI CGCG 1 cut(s) 579
BstH2I RGCGCY 1 cut(s) 476
BstHHI GCGC 1 cut(s) 475
BstKTI GATC 5 cut(s) 175, 280, 328, 409, 436
BstMAI GTCTC 1 cut(s) 533
BstMBI GATC 5 cut(s) 172, 277, 325, 406, 433
BstMCI CGRYCG 1 cut(s) 604
BstMWI GCNNNNNNNGC 4 cut(s) 36, 502, 569, 600
BstNI CCWGG 3 cut(s) 116, 522, 636
BstNSI RCATGY 1 cut(s) 77
BstSCI CCNGG 4 cut(s) 114, 146, 520, 634
BstUI CGCG 1 cut(s) 579
BstV1I GCAGC 3 cut(s) 14, 117, 505
BstX2I RGATCY 2 cut(s) 277, 433
BstXI CCANNNNNNTGG 1 cut(s) 514
BstYI RGATCY 2 cut(s) 277, 433
BstZI CGGCCG 1 cut(s) 601
Bsu15I ATCGAT 1 cut(s) 171
BsuRI GGCC 5 cut(s) 307, 375, 505, 597, 603
BsuTUI ATCGAT 1 cut(s) 171
BtgI CCRYGG 2 cut(s) 457, 598
BtsCI GGATG 2 cut(s) 21, 130
BtsIMutI CAGTG 1 cut(s) 713
Cac8I GCNNGC 3 cut(s) 215, 299, 477
CfoI GCGC 1 cut(s) 475
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 2 cut(s) 17, 504
ClaI ATCGAT 1 cut(s) 171
CseI GACGC 1 cut(s) 578
CsiI ACCWGGT 1 cut(s) 114
Csp6I GTAC 4 cut(s) 81, 273, 387, 581
CviAII CATG 2 cut(s) 74, 709
CviQI GTAC 4 cut(s) 81, 273, 387, 581
DdeI CTNAG 1 cut(s) 90
DpnI GATC 5 cut(s) 174, 279, 327, 408, 435
DpnII GATC 5 cut(s) 172, 277, 325, 406, 433
EaeI YGGCCR 3 cut(s) 373, 595, 601
EagI CGGCCG 1 cut(s) 601
Ecl136II GAGCTC 2 cut(s) 267, 381
EclXI CGGCCG 1 cut(s) 601
Eco147I AGGCCT 1 cut(s) 307
Eco24I GRGCYC 2 cut(s) 269, 383
Eco47I GGWCC 1 cut(s) 17
Eco52I CGGCCG 1 cut(s) 601
Eco53kI GAGCTC 2 cut(s) 267, 381
Eco57I CTGAAG 1 cut(s) 350
Eco88I CYCGRG 2 cut(s) 382, 480
EcoICRI GAGCTC 2 cut(s) 267, 381
EcoRII CCWGG 3 cut(s) 114, 520, 634
EcoT38I GRGCYC 2 cut(s) 269, 383
Esp3I CGTCTC 1 cut(s) 533
FaeI CATG 2 cut(s) 77, 712
FaiI YATR 8 cut(s) 43, 45, 75, 627, 647, 696, 701, 710
FaqI GGGAC 1 cut(s) 3
FatI CATG 2 cut(s) 73, 708
Fnu4HI GCNGC 5 cut(s) 28, 106, 494, 595, 615
FokI GGATG 2 cut(s) 8, 137
FriOI GRGCYC 2 cut(s) 269, 383
Fsp4HI GCNGC 5 cut(s) 28, 106, 494, 595, 615
FspBI CTAG 1 cut(s) 566
GlaI GCGC 1 cut(s) 474
GluI GCNGC 5 cut(s) 28, 106, 494, 595, 615
GsuI CTGGAG 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 476
HaeIII GGCC 5 cut(s) 307, 375, 505, 597, 603
HapII CCGG 3 cut(s) 12, 148, 225
HgaI GACGC 1 cut(s) 578
HhaI GCGC 1 cut(s) 475
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 2 cut(s) 77, 712
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HinfI GANTC 4 cut(s) 143, 348, 415, 631
HpaII CCGG 3 cut(s) 12, 148, 225
Hpy188I TCNGA 6 cut(s) 93, 139, 256, 330, 358, 411
Hpy188III TCNNGA 5 cut(s) 176, 262, 419, 437, 482
Hpy99I CGWCG 4 cut(s) 212, 263, 326, 536
HpyAV CCTTC 2 cut(s) 437, 542
HpyCH4III ACNGT 2 cut(s) 371, 717
HpyCH4IV ACGT 3 cut(s) 207, 258, 360
HpyCH4V TGCA 4 cut(s) 73, 398, 493, 653
HpyF10VI GCNNNNNNNGC 4 cut(s) 36, 502, 569, 600
HpyF3I CTNAG 1 cut(s) 90
HpySE526I ACGT 3 cut(s) 207, 258, 360
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 2 cut(s) 77, 712
HspAI GCGC 1 cut(s) 473
KpnI GGTACC 1 cut(s) 390
Kzo9I GATC 5 cut(s) 172, 277, 325, 406, 433
LmnI GCTCC 2 cut(s) 191, 523
Lsp1109I GCAGC 3 cut(s) 14, 117, 505
MabI ACCWGGT 1 cut(s) 114
MaeI CTAG 1 cut(s) 566
MaeII ACGT 3 cut(s) 207, 258, 360
MaeIII GTNAC 5 cut(s) 185, 365, 416, 605, 711
MalI GATC 5 cut(s) 174, 279, 327, 408, 435
MboI GATC 5 cut(s) 172, 277, 325, 406, 433
MboII GAAGA 2 cut(s) 343, 434
MfeI CAATTG 1 cut(s) 661
MflI RGATCY 2 cut(s) 277, 433
MhlI GDGCHC 3 cut(s) 219, 269, 383
MlsI TGGCCA 1 cut(s) 375
MluCI AATT 3 cut(s) 164, 229, 661
MluNI TGGCCA 1 cut(s) 375
MlyI GAGTC 2 cut(s) 357, 424
MmeI TCCRAC 1 cut(s) 411
MnlI CCTC 9 cut(s) 99, 115, 144, 297, 318, 337, 405, 433, 545
Mox20I TGGCCA 1 cut(s) 375
MscI TGGCCA 1 cut(s) 375
MseI TTAA 2 cut(s) 50, 312
MslI CAYNNNNRTG 1 cut(s) 603
Msp20I TGGCCA 1 cut(s) 375
MspA1I CMGCKG 1 cut(s) 27
MspI CCGG 3 cut(s) 12, 148, 225
MspR9I CCNGG 4 cut(s) 116, 148, 522, 636
MunI CAATTG 1 cut(s) 661
MvaI CCWGG 3 cut(s) 116, 522, 636
MvnI CGCG 1 cut(s) 579
MwoI GCNNNNNNNGC 4 cut(s) 36, 502, 569, 600
NciI CCSGG 1 cut(s) 148
NdeII GATC 5 cut(s) 172, 277, 325, 406, 433
NlaIII CATG 2 cut(s) 77, 712
NlaIV GGNNCC 5 cut(s) 19, 87, 388, 519, 556
NmuCI GTSAC 4 cut(s) 185, 416, 605, 711
NspI RCATGY 1 cut(s) 77
OliI CACNNNNGTG 1 cut(s) 603
PceI AGGCCT 1 cut(s) 307
PcsI WCGNNNNNNNCGW 2 cut(s) 357, 576
PfeI GAWTC 2 cut(s) 143, 631
PfoI TCCNGGA 2 cut(s) 146, 634
PkrI GCNGC 5 cut(s) 29, 107, 495, 596, 616
PleI GAGTC 2 cut(s) 356, 423
PpsI GAGTC 2 cut(s) 356, 423
Psp124BI GAGCTC 2 cut(s) 269, 383
Psp6I CCWGG 3 cut(s) 114, 520, 634
PspGI CCWGG 3 cut(s) 114, 520, 634
PspN4I GGNNCC 5 cut(s) 19, 87, 388, 519, 556
PspPI GGNCC 2 cut(s) 17, 504
PsuI RGATCY 2 cut(s) 277, 433
RsaI GTAC 4 cut(s) 82, 274, 388, 582
RsaNI GTAC 4 cut(s) 81, 273, 387, 581
RseI CAYNNNNRTG 1 cut(s) 603
SacI GAGCTC 2 cut(s) 269, 383
SaqAI TTAA 2 cut(s) 50, 312
SatI GCNGC 5 cut(s) 28, 106, 494, 595, 615
Sau3AI GATC 5 cut(s) 172, 277, 325, 406, 433
Sau96I GGNCC 2 cut(s) 17, 504
SchI GAGTC 2 cut(s) 357, 424
ScrFI CCNGG 4 cut(s) 116, 148, 522, 636
SduI GDGCHC 3 cut(s) 219, 269, 383
SexAI ACCWGGT 1 cut(s) 114
SinI GGWCC 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 603
SmlI CTYRAG 2 cut(s) 176, 437
SmoI CTYRAG 2 cut(s) 176, 437
Sse9I AATT 3 cut(s) 164, 229, 661
SseBI AGGCCT 1 cut(s) 307
SsiI CCGC 5 cut(s) 15, 25, 295, 594, 614
SspMI CTAG 1 cut(s) 566
SstI GAGCTC 2 cut(s) 269, 383
StuI AGGCCT 1 cut(s) 307
StyD4I CCNGG 4 cut(s) 114, 146, 520, 634
TaaI ACNGT 2 cut(s) 371, 717
TaiI ACGT 3 cut(s) 210, 261, 363
TaqI TCGA 3 cut(s) 171, 261, 534
TasI AATT 3 cut(s) 164, 229, 661
TauI GCSGC 2 cut(s) 597, 617
TfiI GAWTC 2 cut(s) 143, 631
Tru1I TTAA 2 cut(s) 50, 312
Tru9I TTAA 2 cut(s) 50, 312
TscAI CASTG 1 cut(s) 720
TseFI GTSAC 4 cut(s) 185, 416, 605, 711
TseI GCWGC 3 cut(s) 27, 105, 493
Tsp45I GTSAC 4 cut(s) 185, 416, 605, 711
TspDTI ATGAA 3 cut(s) 17, 157, 697
TspGWI ACGGA 2 cut(s) 204, 446
TspRI CASTG 1 cut(s) 720
VpaK11BI GGWCC 1 cut(s) 17
XapI RAATTY 1 cut(s) 229
XceI RCATGY 1 cut(s) 77
XspI CTAG 1 cut(s) 566
ZraI GACGTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.