Rh1DG131800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0012691
Physical Location & Seq
Forward (+)
27455537 .. 27455851
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG131800.1

Sequence Viewer

Length: 315 bp
ATGAAAACTACCGGAGGTCCCATCCGCTGCTCGTTTTGCTTATATGTGTTAAACGATAGAACCCACAAGTTGCATGTTTGTACGGCGCCTCAGATATTTTCCTGCAGCAAGAACCAGGTAGATGATGATTTTCAGTCCGATGATTCCCGGAGGCGTTCTCAACAATTCATCGATCTTGAGAAAGGTCACGGAGCTGGAGATGATAACGTCGGCGAGCACCTGACAGGAAATTCTTGGGGGCATTTGGTTCAGTCCGACGTCGAGAGCTCTGGTACAGATCTACAACATTACAACCGCAAGCAGCCGACGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.68

Weight (kDa)

6.01

Isoelectric Point (pI)

56.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 85
AciI CCGC 2 cut(s) 25, 295
AcsI RAATTY 1 cut(s) 229
AcyI GRCGYC 2 cut(s) 86, 258
AfaI GTAC 2 cut(s) 82, 274
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 2 cut(s) 194, 267
AluI AGCT 2 cut(s) 194, 267
Alw21I GWGCWC 2 cut(s) 219, 269
ApeKI GCWGC 3 cut(s) 27, 105, 301
ApoI RAATTY 1 cut(s) 229
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 17
AsuC2I CCSGG 1 cut(s) 148
AvaII GGWCC 1 cut(s) 17
BanI GGYRCC 1 cut(s) 85
BanII GRGCYC 1 cut(s) 269
Bbv12I GWGCWC 2 cut(s) 219, 269
BbvI GCAGC 2 cut(s) 14, 117
BccI CCATC 1 cut(s) 29
BceAI ACGGC 1 cut(s) 99
BciT130I CCWGG 1 cut(s) 116
BcnI CCSGG 1 cut(s) 148
BfmI CTRYAG 1 cut(s) 103
BfoI RGCGCY 1 cut(s) 89
BglII AGATCT 1 cut(s) 277
BisI GCNGC 3 cut(s) 28, 106, 302
BlsI GCNGC 3 cut(s) 29, 107, 303
Bme1390I CCNGG 2 cut(s) 116, 148
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 2 cut(s) 19, 87
BmrFI CCNGG 2 cut(s) 116, 148
BplI GAGNNNNNCTC 2 cut(s) 142, 174
BpmI CTGGAG 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 197
BpuMI CCSGG 1 cut(s) 148
Bsa29I ATCGAT 1 cut(s) 171
BsaHI GRCGYC 2 cut(s) 86, 258
BsaWI WCCGGW 1 cut(s) 11
BseBI CCWGG 1 cut(s) 116
BseCI ATCGAT 1 cut(s) 171
BseGI GGATG 1 cut(s) 21
BseMII CTCAG 1 cut(s) 104
BseXI GCAGC 2 cut(s) 14, 117
BshNI GGYRCC 1 cut(s) 85
BshVI ATCGAT 1 cut(s) 171
BsiHKAI GWGCWC 2 cut(s) 219, 269
BsiSI CCGG 2 cut(s) 12, 148
BslFI GGGAC 1 cut(s) 3
BsmFI GGGAC 1 cut(s) 3
Bsp1286I GDGCHC 2 cut(s) 219, 269
Bsp143I GATC 3 cut(s) 172, 277, 309
BspACI CCGC 2 cut(s) 25, 295
BspCNI CTCAG 1 cut(s) 103
BspDI ATCGAT 1 cut(s) 171
BspLI GGNNCC 2 cut(s) 19, 87
BspMAI CTGCAG 1 cut(s) 107
BspT107I GGYRCC 1 cut(s) 85
BssMI GATC 3 cut(s) 172, 277, 309
BssNI GRCGYC 2 cut(s) 86, 258
Bst2UI CCWGG 1 cut(s) 116
BstACI GRCGYC 2 cut(s) 86, 258
BstC8I GCNNGC 2 cut(s) 215, 299
BstDEI CTNAG 1 cut(s) 90
BstF5I GGATG 1 cut(s) 21
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 3 cut(s) 175, 280, 312
BstMBI GATC 3 cut(s) 172, 277, 309
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNI CCWGG 1 cut(s) 116
BstNSI RCATGY 1 cut(s) 77
BstSCI CCNGG 2 cut(s) 114, 146
BstSFI CTRYAG 1 cut(s) 103
BstV1I GCAGC 2 cut(s) 14, 117
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
Bsu15I ATCGAT 1 cut(s) 171
BsuTUI ATCGAT 1 cut(s) 171
BtsCI GGATG 1 cut(s) 21
Cac8I GCNNGC 2 cut(s) 215, 299
CfoI GCGC 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 17
ClaI ATCGAT 1 cut(s) 171
CsiI ACCWGGT 1 cut(s) 114
Csp6I GTAC 2 cut(s) 81, 273
CviAII CATG 1 cut(s) 74
CviJI RGCY 3 cut(s) 194, 267, 304
CviKI_1 RGCY 3 cut(s) 194, 267, 304
CviQI GTAC 2 cut(s) 81, 273
DdeI CTNAG 1 cut(s) 90
DinI GGCGCC 1 cut(s) 87
DpnI GATC 3 cut(s) 174, 279, 311
DpnII GATC 3 cut(s) 172, 277, 309
Ecl136II GAGCTC 1 cut(s) 267
Eco24I GRGCYC 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 17
Eco53kI GAGCTC 1 cut(s) 267
EcoICRI GAGCTC 1 cut(s) 267
EcoO109I RGGNCCY 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 269
EgeI GGCGCC 1 cut(s) 87
EheI GGCGCC 1 cut(s) 87
FaeI CATG 1 cut(s) 77
FaiI YATR 3 cut(s) 43, 45, 75
FaqI GGGAC 1 cut(s) 3
FatI CATG 1 cut(s) 73
Fnu4HI GCNGC 3 cut(s) 28, 106, 302
FokI GGATG 1 cut(s) 8
FriOI GRGCYC 1 cut(s) 269
Fsp4HI GCNGC 3 cut(s) 28, 106, 302
GlaI GCGC 1 cut(s) 87
GluI GCNGC 3 cut(s) 28, 106, 302
GsuI CTGGAG 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 89
HapII CCGG 2 cut(s) 12, 148
HhaI GCGC 1 cut(s) 88
Hin1I GRCGYC 2 cut(s) 86, 258
Hin1II CATG 1 cut(s) 77
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HinfI GANTC 1 cut(s) 143
HpaII CCGG 2 cut(s) 12, 148
Hpy188I TCNGA 4 cut(s) 93, 139, 256, 314
Hpy188III TCNNGA 2 cut(s) 176, 262
Hpy99I CGWCG 4 cut(s) 212, 260, 263, 310
HpyCH4IV ACGT 2 cut(s) 207, 258
HpyCH4V TGCA 2 cut(s) 73, 105
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 1 cut(s) 90
HpySE526I ACGT 2 cut(s) 207, 258
Hsp92I GRCGYC 2 cut(s) 86, 258
Hsp92II CATG 1 cut(s) 77
HspAI GCGC 1 cut(s) 86
KasI GGCGCC 1 cut(s) 85
Kzo9I GATC 3 cut(s) 172, 277, 309
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 9 cut(s) 25, 101, 115, 128, 161, 180, 210, 233, 255
Lsp1109I GCAGC 2 cut(s) 14, 117
MabI ACCWGGT 1 cut(s) 114
MaeII ACGT 2 cut(s) 207, 258
MaeIII GTNAC 1 cut(s) 185
MalI GATC 3 cut(s) 174, 279, 311
MboI GATC 3 cut(s) 172, 277, 309
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 2 cut(s) 219, 269
MluCI AATT 2 cut(s) 164, 229
Mly113I GGCGCC 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 279
MnlI CCTC 3 cut(s) 8, 99, 144
MseI TTAA 1 cut(s) 50
MspA1I CMGCKG 1 cut(s) 27
MspI CCGG 2 cut(s) 12, 148
MspR9I CCNGG 2 cut(s) 116, 148
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 36
NarI GGCGCC 1 cut(s) 86
NciI CCSGG 1 cut(s) 148
NdeII GATC 3 cut(s) 172, 277, 309
NlaIII CATG 1 cut(s) 77
NlaIV GGNNCC 2 cut(s) 19, 87
NmuCI GTSAC 1 cut(s) 185
NspI RCATGY 1 cut(s) 77
PfeI GAWTC 1 cut(s) 143
PfoI TCCNGGA 1 cut(s) 146
PkrI GCNGC 3 cut(s) 29, 107, 303
PluTI GGCGCC 1 cut(s) 89
PpuMI RGGWCCY 1 cut(s) 17
Psp124BI GAGCTC 1 cut(s) 269
Psp5II RGGWCCY 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 19, 87
PspPI GGNCC 1 cut(s) 17
PspPPI RGGWCCY 1 cut(s) 17
PstI CTGCAG 1 cut(s) 107
PsuI RGATCY 1 cut(s) 277
RsaI GTAC 2 cut(s) 82, 274
RsaNI GTAC 2 cut(s) 81, 273
SacI GAGCTC 1 cut(s) 269
SaqAI TTAA 1 cut(s) 50
SatI GCNGC 3 cut(s) 28, 106, 302
Sau3AI GATC 3 cut(s) 172, 277, 309
Sau96I GGNCC 1 cut(s) 17
ScrFI CCNGG 2 cut(s) 116, 148
SduI GDGCHC 2 cut(s) 219, 269
SetI ASST 8 cut(s) 19, 120, 187, 196, 210, 222, 261, 269
SexAI ACCWGGT 1 cut(s) 114
SfcI CTRYAG 1 cut(s) 103
SfoI GGCGCC 1 cut(s) 87
SinI GGWCC 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 2 cut(s) 164, 229
SsiI CCGC 2 cut(s) 25, 295
SspDI GGCGCC 1 cut(s) 85
SstI GAGCTC 1 cut(s) 269
StyD4I CCNGG 2 cut(s) 114, 146
TaiI ACGT 2 cut(s) 210, 261
TaqI TCGA 2 cut(s) 171, 261
TasI AATT 2 cut(s) 164, 229
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 3 cut(s) 27, 105, 301
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 2 cut(s) 17, 157
TspGWI ACGGA 1 cut(s) 204
VpaK11BI GGWCC 1 cut(s) 17
XapI RAATTY 1 cut(s) 229
XceI RCATGY 1 cut(s) 77
ZraI GACGTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.