Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0012691

Physical Location & Seq

Genomic Coordinates Reverse (-)

320954 .. 321463

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG001600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAAGACAACTCAGAGGAGGGAGAGGAGAACCGAAGGGGTATCTGTGAGGAAGCATCTTGAAGATGGAATGGCTCAAATAAGGAAGGAGCAGAATGAGAGGAGTAAACAGAGGGCCGCAAGGAGGGGAAGGGATGCAAGGACTAGAATTGAGAATCAGCTGGCATACGAATCAAGACCAAAACGGAGGGATACTCAGAGGGATTCAGAAAAGAAGGAACTAGGCTTGGTTCGCCAGCAAGAAATGAATGCAAGGCGCAGGGAGGACCTTTTAAATGAGACGCGAGCACTCACACGGGCAAGCATCAGGATGGAATTACAGAGGGAGCGCCTGAAAGATCAGAGAATAAAATGGCATAAGGACTTGGATGACCTAATGGATGAGAGACAGCAACTCCGGAAACGAAAGGCTTCTTTCAAGAAACTGTGGTGGATTTCTATAGTTGTGGACGGAGTAATTTTAACTTGCTTGGATTTATACATGGAAGACGCAGGTGACATACGCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

20.56

Weight (kDa)

10.41

Isoelectric Point (pI)

63.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012691)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0384821 RchiOBHm_Chr4g0384861
rosa_laevigata	RLG00000010264 RLG00000029711 RLG00000029712
rosa_multiflora	Rmu_co8480945.1_g000001
rosa_roxburghii	Rroxscaffold_5G00332890 Rroxscaffold_5G00332900
rosa_rugosa	Rorug01G0105400
rosa_samantha	Rh1AG126900 Rh1CG120700 Rh1DG131800 Rh1DG131900 Rh4AG002000 Rh4CG001500 Rh4CG001600 Rh4DG001600 Rh7DG319100
rosa_wichuraiana	Rw4G000740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	482
Acc36I	ACCTGC	1 cut(s)	482
AccII	CGCG	1 cut(s)	283
AccIII	TCCGGA	1 cut(s)	396
AciI	CCGC	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	123
AgsI	TTSAA	2 cut(s)	62, 418
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	2 cut(s)	272, 379
Aor13HI	TCCGGA	1 cut(s)	396
AoxI	GGCC	1 cut(s)	114
Asp700I	GAANNNNTTC	1 cut(s)	409
AspLEI	GCGC	2 cut(s)	258, 330
AspS9I	GGNCC	2 cut(s)	114, 265
AsuHPI	GGTGA	1 cut(s)	506
AvaII	GGWCC	1 cut(s)	265
BbsI	GAAGAC	2 cut(s)	11, 492
Bbv12I	GWGCWC	1 cut(s)	289
BccI	CCATC	2 cut(s)	59, 304
BciVI	GTATCC	1 cut(s)	184
BcoDI	GTCTC	2 cut(s)	272, 379
BfaI	CTAG	2 cut(s)	144, 221
BfmI	CTRYAG	1 cut(s)	438
BfoI	RGCGCY	1 cut(s)	331
BfuAI	ACCTGC	1 cut(s)	482
BfuI	GTATCC	1 cut(s)	184
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	2 cut(s)	114, 265
BmsI	GCATC	3 cut(s)	64, 124, 312
BpiI	GAAGAC	2 cut(s)	11, 492
BplI	GAGNNNNNCTC	2 cut(s)	178, 210
BsaWI	WCCGGW	1 cut(s)	396
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
BseAI	TCCGGA	1 cut(s)	396
BseGI	GGATG	4 cut(s)	139, 315, 373, 385
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMII	CTCAG	2 cut(s)	26, 209
BseRI	GAGGAG	3 cut(s)	31, 40, 115
Bsh1236I	CGCG	1 cut(s)	283
BshFI	GGCC	1 cut(s)	116
BsiHKAI	GWGCWC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	397
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	2 cut(s)	272, 379
BsmBI	CGTCTC	1 cut(s)	272
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp13I	TCCGGA	1 cut(s)	396
Bsp143I	GATC	1 cut(s)	337
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	2 cut(s)	25, 208
BspEI	TCCGGA	1 cut(s)	396
BspFNI	CGCG	1 cut(s)	283
BspMI	ACCTGC	1 cut(s)	482
BssMI	GATC	1 cut(s)	337
Bst4CI	ACNGT	1 cut(s)	426
BstC8I	GCNNGC	4 cut(s)	162, 236, 285, 301
BstDEI	CTNAG	2 cut(s)	12, 195
BstF5I	GGATG	4 cut(s)	139, 315, 373, 385
BstFNI	CGCG	1 cut(s)	283
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	2 cut(s)	258, 330
BstKTI	GATC	1 cut(s)	340
BstMAI	GTCTC	2 cut(s)	272, 379
BstMBI	GATC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstSFI	CTRYAG	1 cut(s)	438
BstUI	CGCG	1 cut(s)	283
BstV2I	GAAGAC	2 cut(s)	11, 492
BsuI	GTATCC	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	116
BtsCI	GGATG	4 cut(s)	139, 315, 373, 385
BveI	ACCTGC	1 cut(s)	482
Cac8I	GCNNGC	4 cut(s)	162, 236, 285, 301
CfoI	GCGC	2 cut(s)	258, 330
Cfr13I	GGNCC	2 cut(s)	114, 265
CseI	GACGC	2 cut(s)	289, 497
CviAII	CATG	1 cut(s)	481
CviJI	RGCY	5 cut(s)	74, 116, 160, 225, 410
CviKI_1	RGCY	5 cut(s)	74, 116, 160, 225, 410
DdeI	CTNAG	2 cut(s)	12, 195
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
DraI	TTTAAA	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	265
EcoO109I	RGGNCCY	1 cut(s)	265
Esp3I	CGTCTC	1 cut(s)	272
FaeI	CATG	1 cut(s)	484
FaiI	YATR	6 cut(s)	166, 357, 440, 478, 482, 500
FatI	CATG	1 cut(s)	480
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	4 cut(s)	146, 322, 380, 392
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	2 cut(s)	144, 221
GlaI	GCGC	2 cut(s)	257, 329
GluI	GCNGC	1 cut(s)	117
HaeII	RGCGCY	1 cut(s)	331
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	1 cut(s)	397
HgaI	GACGC	2 cut(s)	289, 497
HhaI	GCGC	2 cut(s)	258, 330
Hin1II	CATG	1 cut(s)	484
Hin6I	GCGC	2 cut(s)	256, 328
HinP1I	GCGC	2 cut(s)	256, 328
HinfI	GANTC	3 cut(s)	154, 170, 203
HpaII	CCGG	1 cut(s)	397
HphI	GGTGA	1 cut(s)	506
Hpy166II	GTNNAC	2 cut(s)	107, 448
Hpy188I	TCNGA	4 cut(s)	15, 198, 208, 342
Hpy188III	TCNNGA	5 cut(s)	59, 174, 307, 397, 418
Hpy8I	GTNNAC	2 cut(s)	107, 448
HpyAV	CCTTC	4 cut(s)	29, 79, 123, 208
HpyCH4III	ACNGT	1 cut(s)	426
HpyCH4V	TGCA	2 cut(s)	137, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpyF3I	CTNAG	2 cut(s)	12, 195
Hsp92II	CATG	1 cut(s)	484
HspAI	GCGC	2 cut(s)	256, 328
Kpn2I	TCCGGA	1 cut(s)	396
Kzo9I	GATC	1 cut(s)	337
LmnI	GCTCC	2 cut(s)	88, 325
LpnPI	CCDG	7 cut(s)	146, 244, 248, 292, 344, 410, 477
LweI	GCATC	3 cut(s)	64, 124, 312
MaeI	CTAG	2 cut(s)	144, 221
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	3 cut(s)	16, 74, 497
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	3 cut(s)	147, 314, 456
MroI	TCCGGA	1 cut(s)	396
MroXI	GAANNNNTTC	1 cut(s)	409
MseI	TTAA	2 cut(s)	272, 461
MslI	CAYNNNNRTG	1 cut(s)	308
MspA1I	CMGCKG	1 cut(s)	160
MspI	CCGG	1 cut(s)	397
Mva1269I	GAATGC	1 cut(s)	253
MvnI	CGCG	1 cut(s)	283
MwoI	GCNNNNNNNGC	1 cut(s)	231
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	1 cut(s)	484
NmuCI	GTSAC	1 cut(s)	494
PaqCI	CACCTGC	1 cut(s)	482
PctI	GAATGC	1 cut(s)	253
PdmI	GAANNNNTTC	1 cut(s)	409
PfeI	GAWTC	3 cut(s)	154, 170, 203
PkrI	GCNGC	1 cut(s)	118
PpuMI	RGGWCCY	1 cut(s)	265
Psp5II	RGGWCCY	1 cut(s)	265
PspPI	GGNCC	2 cut(s)	114, 265
PspPPI	RGGWCCY	1 cut(s)	265
PvuII	CAGCTG	1 cut(s)	160
RseI	CAYNNNNRTG	1 cut(s)	308
SaqAI	TTAA	2 cut(s)	272, 461
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	337
Sau96I	GGNCC	2 cut(s)	114, 265
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	4 cut(s)	162, 270, 375, 496
SfaNI	GCATC	3 cut(s)	64, 124, 312
SfcI	CTRYAG	1 cut(s)	438
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	308
Sse9I	AATT	3 cut(s)	147, 314, 456
SsiI	CCGC	1 cut(s)	117
SspMI	CTAG	2 cut(s)	144, 221
TaaI	ACNGT	1 cut(s)	426
TasI	AATT	3 cut(s)	147, 314, 456
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	3 cut(s)	154, 170, 203
Tru1I	TTAA	2 cut(s)	272, 461
Tru9I	TTAA	2 cut(s)	272, 461
TseFI	GTSAC	1 cut(s)	494
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	2 cut(s)	17, 260
TspGWI	ACGGA	2 cut(s)	199, 465
VpaK11BI	GGWCC	1 cut(s)	265
XmnI	GAANNNNTTC	1 cut(s)	409
XspI	CTAG	2 cut(s)	144, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.