Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0012691

Physical Location & Seq

Genomic Coordinates Reverse (-)

1505235 .. 1507449

Gene Structure 2215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G000740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGCATCCCAGTAATGGAGAAGACCGTGGAGCTAGTGGCACAGGCCTCGGAGTTCTAATCAGTCCCATGATAGAGGTTGTTGATGAAATTTATAGGGCACAAGATGATTTGATCAAGGCTCGAGGTTTAAGTTCCTACGCTATGTTGCTGCTGACTCTTGAGAAACTGGATAAGGAGGACATTCTAATTGAACAAACTATGGATAAGCTGATCAGAGAACTAGCCAGCCTAGAGCAAGAAATCTCAGATGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_1 SH3_9

Protein Analysis

85

Amino Acids

9.45

Weight (kDa)

4.28

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012691)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0384821 RchiOBHm_Chr4g0384861
rosa_laevigata	RLG00000010264 RLG00000029711 RLG00000029712
rosa_multiflora	Rmu_co8480945.1_g000001
rosa_roxburghii	Rroxscaffold_5G00332890 Rroxscaffold_5G00332900
rosa_rugosa	Rorug01G0105400
rosa_samantha	Rh1AG126900 Rh1CG120700 Rh1DG131800 Rh1DG131900 Rh4AG002000 Rh4CG001500 Rh4CG001600 Rh4DG001600 Rh7DG319100
rosa_wichuraiana	Rw4G000740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	191
AluBI	AGCT	2 cut(s)	32, 208
AluI	AGCT	2 cut(s)	32, 208
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	148
ApoI	RAATTY	1 cut(s)	87
AvaI	CYCGRG	1 cut(s)	120
BaeGI	GKGCMC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	135
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BclI	TGATCA	2 cut(s)	111, 210
BfaI	CTAG	3 cut(s)	33, 221, 230
BisI	GCNGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	150
BmeT110I	CYCGRG	1 cut(s)	120
BmrI	ACTGGG	1 cut(s)	3
BmsI	GCATC	1 cut(s)	13
BmuI	ACTGGG	1 cut(s)	3
BpiI	GAAGAC	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	179
BsaJI	CCNNGG	2 cut(s)	25, 46
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	2 cut(s)	9, 171
BseDI	CCNNGG	2 cut(s)	25, 46
BseGI	GGATG	1 cut(s)	4
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	2 cut(s)	9, 171
BseSI	GKGCMC	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	135
BshFI	GGCC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmFI	GGGAC	1 cut(s)	48
BsnI	GGCC	1 cut(s)	45
BsoBI	CYCGRG	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	111, 210
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	1 cut(s)	257
BsrI	ACTGG	2 cut(s)	9, 171
BssECI	CCNNGG	2 cut(s)	25, 46
BssMI	GATC	2 cut(s)	111, 210
Bst4CI	ACNGT	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	1 cut(s)	244
BstDSI	CCRYGG	1 cut(s)	25
BstF5I	GGATG	1 cut(s)	4
BstKTI	GATC	2 cut(s)	114, 213
BstMBI	GATC	2 cut(s)	111, 210
BstSLI	GKGCMC	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	45
BtgI	CCRYGG	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	4
Cac8I	GCNNGC	1 cut(s)	226
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	6 cut(s)	32, 45, 119, 208, 224, 228
CviKI_1	RGCY	6 cut(s)	32, 45, 119, 208, 224, 228
DdeI	CTNAG	1 cut(s)	244
DpnI	GATC	2 cut(s)	113, 212
DpnII	GATC	2 cut(s)	111, 210
Eco147I	AGGCCT	1 cut(s)	45
Eco88I	CYCGRG	1 cut(s)	120
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	70
FaiI	YATR	4 cut(s)	68, 93, 143, 200
FaqI	GGGAC	1 cut(s)	48
FatI	CATG	1 cut(s)	66
FbaI	TGATCA	2 cut(s)	111, 210
Fnu4HI	GCNGC	1 cut(s)	149
Fsp4HI	GCNGC	1 cut(s)	149
FspBI	CTAG	3 cut(s)	33, 221, 230
GluI	GCNGC	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	45
Hin1II	CATG	1 cut(s)	70
HinfI	GANTC	1 cut(s)	154
Hpy188I	TCNGA	3 cut(s)	50, 215, 247
Hpy188III	TCNNGA	1 cut(s)	158
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	244
Hsp92II	CATG	1 cut(s)	70
Ksp22I	TGATCA	2 cut(s)	111, 210
Kzo9I	GATC	2 cut(s)	111, 210
LmnI	GCTCC	1 cut(s)	29
LpnPI	CCDG	4 cut(s)	22, 27, 152, 238
Lsp1109I	GCAGC	1 cut(s)	135
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	3 cut(s)	33, 221, 230
MalI	GATC	2 cut(s)	113, 212
MboI	GATC	2 cut(s)	111, 210
MboII	GAAGA	1 cut(s)	32
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	2 cut(s)	87, 186
MlyI	GAGTC	1 cut(s)	148
MnlI	CCTC	4 cut(s)	56, 67, 116, 169
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	128
NdeII	GATC	2 cut(s)	111, 210
NlaIII	CATG	1 cut(s)	70
NsiI	ATGCAT	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	120
PceI	AGGCCT	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	150
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PspXI	VCTCGAGB	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	128
SatI	GCNGC	1 cut(s)	149
Sau3AI	GATC	2 cut(s)	111, 210
SchI	GAGTC	1 cut(s)	148
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	4 cut(s)	34, 78, 127, 210
SfaNI	GCATC	1 cut(s)	13
Sfr274I	CTCGAG	1 cut(s)	120
SlaI	CTCGAG	1 cut(s)	120
SmlI	CTYRAG	2 cut(s)	120, 158
SmoI	CTYRAG	2 cut(s)	120, 158
Sse9I	AATT	2 cut(s)	87, 186
SseBI	AGGCCT	1 cut(s)	45
SspMI	CTAG	3 cut(s)	33, 221, 230
StuI	AGGCCT	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	121
TasI	AATT	2 cut(s)	87, 186
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
TseI	GCWGC	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	99
XapI	RAATTY	1 cut(s)	87
XhoI	CTCGAG	1 cut(s)	120
XspI	CTAG	3 cut(s)	33, 221, 230
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.