Rh1CG120700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0012691
Physical Location & Seq
Forward (+)
26256321 .. 26258058
1738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG120700.1

Sequence Viewer

Length: 789 bp
ATGTTTGTACGGCGCCTAAGATATTTTCCGGCAGTAAGAACCAGATCTACGACATTACAACCGCAAGCAGCCGACGATCTGAAGAAAGGGAGAGAGGGAGTCGGTTCTGACGTTTGTAACGGTGGCCAGAGCTCGGGTACCAAAAATGCACACCAAGATCAGAGGAGTCACGAAGAAAACTTGGATCTTGAGGAAGGTGGGCAAATCCGTGGTAGTGCTAAAGCGCCTGCTCGGGATTTCTTGCAGTGTTTTTGGCCCAAGCATGCAGTGCCTGGTCATCTCGTCGATACAGCTTTTGAAGGAGGCACCAACGCCTTGGACGCAACTCGCATACCTGGTCGTGGTGGCCACGGCCGTGACATTGCGGATGTTACTGTGAATGTTGAGACAAGAAAGCAAATTCTTGACAATGAAAGGAGGGAGGGGAGCACTCAGAAGAAGTCCGGGAGGCAATATAATGAAGAAATGACTATCTTAAGGAAGGCTGAGATTGAGCGGAGAAAACAGTGGGATACAAGGAGGAAGATGAATGCTAGGAAGACATGGGAGGGGAGCAGGAGCACTGAGGAGGAGTCAGAGAGGCAGTGTGATGCGATTGACAGAAGAAAACAGAGGGATATCAGGAGGAAGATAAATGCTAGGAAGACATGGGACGGCAGCAGTGAGACAGAATCAGAGTGGCAGCATGATGCAGAAGAAATATCTATTTTAAGGAGGGATGAAAATGAGAGGAGGAAACAGAGGGATGCAAGGAAGAATAGAAATGCAAGGAAGACATGTGAGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

262

Amino Acids

30.35

Weight (kDa)

9.77

Isoelectric Point (pI)

63.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 137
AccB1I GGYRCC 3 cut(s) 12, 137, 305
AccBSI CCGCTC 1 cut(s) 496
AciI CCGC 3 cut(s) 62, 365, 496
AclWI GGATC 1 cut(s) 192
AcoI YGGCCR 3 cut(s) 124, 346, 352
AcsI RAATTY 1 cut(s) 399
AcuI CTGAAG 1 cut(s) 101
AcyI GRCGYC 1 cut(s) 13
AfaI GTAC 2 cut(s) 9, 139
AfiI CCNNNNNNNGG 2 cut(s) 133, 341
AflII CTTAAG 1 cut(s) 475
AflIII ACRYGT 1 cut(s) 776
AgsI TTSAA 1 cut(s) 299
AjnI CCWGG 2 cut(s) 271, 334
AleI CACNNNNGTG 1 cut(s) 354
AluBI AGCT 2 cut(s) 132, 293
AluI AGCT 2 cut(s) 132, 293
Alw21I GWGCWC 3 cut(s) 134, 431, 563
Alw26I GTCTC 2 cut(s) 380, 659
AlwI GGATC 1 cut(s) 192
AlwNI CAGNNNCTG 1 cut(s) 272
Ama87I CYCGRG 2 cut(s) 133, 231
AoxI GGCC 4 cut(s) 124, 254, 346, 352
ApeKI GCWGC 3 cut(s) 68, 657, 682
ApoI RAATTY 1 cut(s) 399
Asp718I GGTACC 1 cut(s) 137
AspLEI GCGC 2 cut(s) 15, 226
AspS9I GGNCC 1 cut(s) 255
AsuC2I CCSGG 1 cut(s) 445
AvaI CYCGRG 2 cut(s) 133, 231
BalI TGGCCA 2 cut(s) 126, 348
BanI GGYRCC 3 cut(s) 12, 137, 305
BanII GRGCYC 1 cut(s) 134
BbsI GAAGAC 3 cut(s) 545, 650, 779
Bbv12I GWGCWC 3 cut(s) 134, 431, 563
BbvI GCAGC 3 cut(s) 80, 669, 694
BceAI ACGGC 4 cut(s) 26, 339, 367, 670
BciT130I CCWGG 2 cut(s) 273, 336
BciVI GTATCC 1 cut(s) 505
BcnI CCSGG 1 cut(s) 445
BcoDI GTCTC 2 cut(s) 380, 659
BfaI CTAG 2 cut(s) 534, 639
BfoI RGCGCY 2 cut(s) 16, 227
BfrI CTTAAG 1 cut(s) 475
BfuI GTATCC 1 cut(s) 505
BglII AGATCT 1 cut(s) 44
BisI GCNGC 3 cut(s) 69, 658, 683
BlsI GCNGC 3 cut(s) 70, 659, 684
Bme1390I CCNGG 3 cut(s) 273, 336, 445
BmeT110I CYCGRG 2 cut(s) 133, 231
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 3 cut(s) 14, 139, 307
BmrFI CCNGG 3 cut(s) 273, 336, 445
BmsI GCATC 3 cut(s) 580, 679, 736
BpiI GAAGAC 3 cut(s) 545, 650, 779
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 445
BsaHI GRCGYC 1 cut(s) 13
BsaJI CCNNGG 3 cut(s) 208, 315, 349
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 341
Bse3DI GCAATG 1 cut(s) 360
BseBI CCWGG 2 cut(s) 273, 336
BseDI CCNNGG 3 cut(s) 208, 315, 349
BseGI GGATG 3 cut(s) 373, 724, 751
BseLI CCNNNNNNNGG 2 cut(s) 133, 341
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 3 cut(s) 446, 477, 555
BseRI GAGGAG 4 cut(s) 178, 581, 584, 745
BseX3I CGGCCG 1 cut(s) 352
BseXI GCAGC 3 cut(s) 80, 669, 694
Bsh1285I CGRYCG 1 cut(s) 355
BshFI GGCC 4 cut(s) 126, 256, 348, 354
BshNI GGYRCC 3 cut(s) 12, 137, 305
BsiEI CGRYCG 1 cut(s) 355
BsiHKAI GWGCWC 3 cut(s) 134, 431, 563
BsiHKCI CYCGRG 2 cut(s) 133, 231
BsiSI CCGG 2 cut(s) 29, 444
BslFI GGGAC 1 cut(s) 665
BslI CCNNNNNNNGG 2 cut(s) 133, 341
BsmAI GTCTC 2 cut(s) 380, 659
BsmFI GGGAC 1 cut(s) 665
BsmI GAATGC 1 cut(s) 535
BsnI GGCC 4 cut(s) 126, 256, 348, 354
BsoBI CYCGRG 2 cut(s) 133, 231
Bsp1286I GDGCHC 3 cut(s) 134, 431, 563
Bsp143I GATC 4 cut(s) 44, 76, 157, 184
BspACI CCGC 3 cut(s) 62, 365, 496
BspANI GGCC 4 cut(s) 126, 256, 348, 354
BspCNI CTCAG 3 cut(s) 445, 478, 556
BspLI GGNNCC 3 cut(s) 14, 139, 307
BspPI GGATC 1 cut(s) 192
BspT107I GGYRCC 3 cut(s) 12, 137, 305
BspTI CTTAAG 1 cut(s) 475
BsrBI CCGCTC 1 cut(s) 496
BsrDI GCAATG 1 cut(s) 360
BssECI CCNNGG 3 cut(s) 208, 315, 349
BssMI GATC 4 cut(s) 44, 76, 157, 184
BssNI GRCGYC 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 315
Bst2UI CCWGG 2 cut(s) 273, 336
Bst4CI ACNGT 3 cut(s) 122, 376, 507
BstACI GRCGYC 1 cut(s) 13
BstAFI CTTAAG 1 cut(s) 475
BstAPI GCANNNNNTGC 1 cut(s) 268
BstC8I GCNNGC 3 cut(s) 66, 228, 264
BstDEI CTNAG 4 cut(s) 17, 432, 486, 564
BstDSI CCRYGG 2 cut(s) 208, 349
BstF5I GGATG 3 cut(s) 373, 724, 751
BstH2I RGCGCY 2 cut(s) 16, 227
BstHHI GCGC 2 cut(s) 15, 226
BstKTI GATC 4 cut(s) 47, 79, 160, 187
BstMAI GTCTC 2 cut(s) 380, 659
BstMBI GATC 4 cut(s) 44, 76, 157, 184
BstMCI CGRYCG 1 cut(s) 355
BstMWI GCNNNNNNNGC 2 cut(s) 268, 320
BstNI CCWGG 2 cut(s) 273, 336
BstNSI RCATGY 2 cut(s) 266, 780
BstSCI CCNGG 3 cut(s) 271, 334, 443
BstV1I GCAGC 3 cut(s) 80, 669, 694
BstV2I GAAGAC 3 cut(s) 545, 650, 779
BstX2I RGATCY 2 cut(s) 44, 184
BstXI CCANNNNNNTGG 1 cut(s) 316
BstYI RGATCY 2 cut(s) 44, 184
BstZI CGGCCG 1 cut(s) 352
BsuI GTATCC 1 cut(s) 505
BsuRI GGCC 4 cut(s) 126, 256, 348, 354
BtgI CCRYGG 2 cut(s) 208, 349
BtsCI GGATG 3 cut(s) 373, 724, 751
BtsI GCAGTG 4 cut(s) 251, 273, 590, 667
BtsIMutI CAGTG 6 cut(s) 251, 273, 512, 561, 590, 667
Cac8I GCNNGC 3 cut(s) 66, 228, 264
CaiI CAGNNNCTG 1 cut(s) 272
CfoI GCGC 2 cut(s) 15, 226
Cfr13I GGNCC 1 cut(s) 255
CseI GACGC 1 cut(s) 329
CsiI ACCWGGT 1 cut(s) 334
Csp6I GTAC 2 cut(s) 8, 138
CviAII CATG 5 cut(s) 263, 543, 648, 686, 777
CviJI RGCY 8 cut(s) 71, 126, 132, 256, 293, 348, 354, 485
CviKI_1 RGCY 8 cut(s) 71, 126, 132, 256, 293, 348, 354, 485
CviQI GTAC 2 cut(s) 8, 138
DdeI CTNAG 4 cut(s) 17, 432, 486, 564
DinI GGCGCC 1 cut(s) 14
DpnI GATC 4 cut(s) 46, 78, 159, 186
DpnII GATC 4 cut(s) 44, 76, 157, 184
EaeI YGGCCR 3 cut(s) 124, 346, 352
EagI CGGCCG 1 cut(s) 352
Ecl136II GAGCTC 1 cut(s) 132
EclXI CGGCCG 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 134
Eco32I GATATC 1 cut(s) 619
Eco52I CGGCCG 1 cut(s) 352
Eco53kI GAGCTC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 101
Eco88I CYCGRG 2 cut(s) 133, 231
EcoICRI GAGCTC 1 cut(s) 132
EcoRII CCWGG 2 cut(s) 271, 334
EcoRV GATATC 1 cut(s) 619
EcoT14I CCWWGG 1 cut(s) 315
EcoT38I GRGCYC 1 cut(s) 134
EgeI GGCGCC 1 cut(s) 14
EheI GGCGCC 1 cut(s) 14
ErhI CCWWGG 1 cut(s) 315
FaeI CATG 5 cut(s) 266, 546, 651, 689, 780
FaiI YATR 7 cut(s) 264, 332, 456, 544, 649, 687, 778
FaqI GGGAC 1 cut(s) 665
FatI CATG 5 cut(s) 262, 542, 647, 685, 776
Fnu4HI GCNGC 3 cut(s) 69, 658, 683
FokI GGATG 3 cut(s) 380, 731, 758
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 3 cut(s) 69, 658, 683
FspBI CTAG 2 cut(s) 534, 639
GlaI GCGC 2 cut(s) 14, 225
GluI GCNGC 3 cut(s) 69, 658, 683
HaeII RGCGCY 2 cut(s) 16, 227
HaeIII GGCC 4 cut(s) 126, 256, 348, 354
HapII CCGG 2 cut(s) 29, 444
HgaI GACGC 1 cut(s) 329
HhaI GCGC 2 cut(s) 15, 226
Hin1I GRCGYC 1 cut(s) 13
Hin1II CATG 5 cut(s) 266, 546, 651, 689, 780
Hin6I GCGC 2 cut(s) 13, 224
HinP1I GCGC 2 cut(s) 13, 224
HinfI GANTC 4 cut(s) 99, 166, 572, 671
HpaII CCGG 2 cut(s) 29, 444
Hpy188I TCNGA 6 cut(s) 81, 109, 162, 435, 577, 676
Hpy188III TCNNGA 5 cut(s) 170, 188, 233, 404, 622
Hpy99I CGWCG 2 cut(s) 77, 287
HpyAV CCTTC 3 cut(s) 188, 293, 475
HpyCH4III ACNGT 3 cut(s) 122, 376, 507
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 6 cut(s) 149, 244, 266, 692, 749, 767
HpyF10VI GCNNNNNNNGC 2 cut(s) 268, 320
HpyF3I CTNAG 4 cut(s) 17, 432, 486, 564
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 13
Hsp92II CATG 5 cut(s) 266, 546, 651, 689, 780
HspAI GCGC 2 cut(s) 13, 224
KasI GGCGCC 1 cut(s) 12
KpnI GGTACC 1 cut(s) 141
Kzo9I GATC 4 cut(s) 44, 76, 157, 184
LmnI GCTCC 3 cut(s) 426, 552, 558
Lsp1109I GCAGC 3 cut(s) 80, 669, 694
LweI GCATC 3 cut(s) 580, 679, 736
MabI ACCWGGT 1 cut(s) 334
MaeI CTAG 2 cut(s) 534, 639
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 4 cut(s) 116, 167, 356, 370
MalI GATC 4 cut(s) 46, 78, 159, 186
MbiI CCGCTC 1 cut(s) 496
MboI GATC 4 cut(s) 44, 76, 157, 184
MflI RGATCY 2 cut(s) 44, 184
MhlI GDGCHC 3 cut(s) 134, 431, 563
MlsI TGGCCA 2 cut(s) 126, 348
MluCI AATT 1 cut(s) 399
MluNI TGGCCA 2 cut(s) 126, 348
Mly113I GGCGCC 1 cut(s) 13
MlyI GAGTC 3 cut(s) 108, 175, 581
Mox20I TGGCCA 2 cut(s) 126, 348
MscI TGGCCA 2 cut(s) 126, 348
MseI TTAA 2 cut(s) 476, 710
MslI CAYNNNNRTG 1 cut(s) 354
Msp20I TGGCCA 2 cut(s) 126, 348
MspCI CTTAAG 1 cut(s) 475
MspI CCGG 2 cut(s) 29, 444
MspR9I CCNGG 3 cut(s) 273, 336, 445
Mva1269I GAATGC 1 cut(s) 535
MvaI CCWGG 2 cut(s) 273, 336
MwoI GCNNNNNNNGC 2 cut(s) 268, 320
NarI GGCGCC 1 cut(s) 13
NciI CCSGG 1 cut(s) 445
NdeII GATC 4 cut(s) 44, 76, 157, 184
NlaIII CATG 5 cut(s) 266, 546, 651, 689, 780
NlaIV GGNNCC 3 cut(s) 14, 139, 307
NmuCI GTSAC 2 cut(s) 167, 356
NspI RCATGY 2 cut(s) 266, 780
OliI CACNNNNGTG 1 cut(s) 354
PaeI GCATGC 1 cut(s) 266
PciI ACATGT 1 cut(s) 776
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PctI GAATGC 1 cut(s) 535
PfeI GAWTC 1 cut(s) 671
PfoI TCCNGGA 1 cut(s) 443
PkrI GCNGC 3 cut(s) 70, 659, 684
PleI GAGTC 3 cut(s) 107, 174, 580
PluTI GGCGCC 1 cut(s) 16
PpsI GAGTC 3 cut(s) 107, 174, 580
PscI ACATGT 1 cut(s) 776
Psp124BI GAGCTC 1 cut(s) 134
Psp6I CCWGG 2 cut(s) 271, 334
PspGI CCWGG 2 cut(s) 271, 334
PspN4I GGNNCC 3 cut(s) 14, 139, 307
PspPI GGNCC 1 cut(s) 255
PsrI GAACNNNNNNTAC 2 cut(s) 31, 63
PstNI CAGNNNCTG 1 cut(s) 272
PsuI RGATCY 2 cut(s) 44, 184
RsaI GTAC 2 cut(s) 9, 139
RsaNI GTAC 2 cut(s) 8, 138
RseI CAYNNNNRTG 1 cut(s) 354
SacI GAGCTC 1 cut(s) 134
SaqAI TTAA 2 cut(s) 476, 710
SatI GCNGC 3 cut(s) 69, 658, 683
Sau3AI GATC 4 cut(s) 44, 76, 157, 184
Sau96I GGNCC 1 cut(s) 255
SchI GAGTC 3 cut(s) 108, 175, 581
ScrFI CCNGG 3 cut(s) 273, 336, 445
SduI GDGCHC 3 cut(s) 134, 431, 563
SetI ASST 6 cut(s) 114, 134, 199, 295, 337, 788
SexAI ACCWGGT 1 cut(s) 334
SfaNI GCATC 3 cut(s) 580, 679, 736
SfoI GGCGCC 1 cut(s) 14
SmiMI CAYNNNNRTG 1 cut(s) 354
SmlI CTYRAG 2 cut(s) 188, 475
SmoI CTYRAG 2 cut(s) 188, 475
SphI GCATGC 1 cut(s) 266
Sse9I AATT 1 cut(s) 399
SsiI CCGC 3 cut(s) 62, 365, 496
SspDI GGCGCC 1 cut(s) 12
SspMI CTAG 2 cut(s) 534, 639
SstI GAGCTC 1 cut(s) 134
StyD4I CCNGG 3 cut(s) 271, 334, 443
StyI CCWWGG 1 cut(s) 315
TaaI ACNGT 3 cut(s) 122, 376, 507
TaiI ACGT 1 cut(s) 114
TaqI TCGA 1 cut(s) 285
TasI AATT 1 cut(s) 399
TfiI GAWTC 1 cut(s) 671
Tru1I TTAA 2 cut(s) 476, 710
Tru9I TTAA 2 cut(s) 476, 710
TscAI CASTG 6 cut(s) 251, 273, 512, 568, 590, 667
TseFI GTSAC 2 cut(s) 167, 356
TseI GCWGC 3 cut(s) 68, 657, 682
Tsp45I GTSAC 2 cut(s) 167, 356
TspDTI ATGAA 4 cut(s) 426, 474, 542, 735
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 6 cut(s) 251, 273, 512, 568, 590, 667
Vha464I CTTAAG 1 cut(s) 475
XapI RAATTY 1 cut(s) 399
XceI RCATGY 2 cut(s) 266, 780
XspI CTAG 2 cut(s) 534, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.