Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0012691

Physical Location & Seq

Genomic Coordinates Reverse (-)

325727 .. 326764

Gene Structure 1038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG001600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGTTTTTTCTGAATTACTAGACAATAATGAATGCATCGAAAGGGAGAGGAGAAAGGGGCGAACCGAAAGGGAGTCTGATAGCCAATTTTATGATTTCAAAATATCTCATGTAAGGAATGAGAATGTGAGAGAGCAGAGGGCTGCAAGGAAGACAATTCAGAGGAGGGAGAGGAGAACCGAAGGGGTATCTGTGAGGCAGCATCTTGAAGATGGAATGGCTCAAATAAGGAAGGAGCAGAATGAGAGGAGTAAACAGAGGGCCGCAAGGAGGGGAAGGGATGCAAGGACTAGAATTGAGAATCAGCTGGCATACGAATCAAGACCAAAACGGAGGGATACTCAGAGGGATTCAGAAAAGAAGGAACTAGGCTTGGTTCGCCAGCAAGAAATGAATGCAAAGCGCAGGGAGGACCTTTTAAATGAGAGGCGAGCACTCACACGGGCAGACATCAGGATGGAATTACAGAGGGAGCGCCTGAAAGATCAGAGAATAAAATGGCATAAGGACTTGGATGACCTAATGGATGAGAGACAGCAGCTCCGGAAACGAAAGGCTTCTTTCAAGAAACTGTGGTGGATTTCCATAGTGGTGGACGGAGTAATTTTAACTTGCTTGGATTTATACATGGAAGACGCAGGTGGCATACGCTATTGGACCTCTTTTGTTGCTTACCTGATACTTTTTTCACTATGGTGGGGTATGATATCCAAGAGACAACAGAAGCTAGAAGGGCCTCCCCAGGCAATTGAGTGTGGAGCTGGATTAATGAAGGGTCTTTGTGTGATTGCCCTCAAGATGGTGTTAATCAATAGATTCAAGAAAGAATCTCTTCTCTATTATGTTGTCAAGTGTTTCTTTTATGTCGGGGCTCGAGGTTTAATTTCCTACGCTATGTTGCTGCTGACTCTTGAGAAACTGGATAAGGAGGACCTTCTAATTGAACAAACTATGGATAAGCTGATCAGAGAACTAGCCAGCCTAGAGCAAGAAATCTCAGATGATGAGAGAAATTGGATAAGGAGGAGGACCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

345

Amino Acids

41.45

Weight (kDa)

9.74

Isoelectric Point (pI)

59.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012691)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0384821 RchiOBHm_Chr4g0384861
rosa_laevigata	RLG00000010264 RLG00000029711 RLG00000029712
rosa_multiflora	Rmu_co8480945.1_g000001
rosa_roxburghii	Rroxscaffold_5G00332890 Rroxscaffold_5G00332900
rosa_rugosa	Rorug01G0105400
rosa_samantha	Rh1AG126900 Rh1CG120700 Rh1DG131800 Rh1DG131900 Rh4AG002000 Rh4CG001500 Rh4CG001600 Rh4DG001600 Rh7DG319100
rosa_wichuraiana	Rw4G000740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	629
Acc36I	ACCTGC	1 cut(s)	629
AccIII	TCCGGA	1 cut(s)	543
AciI	CCGC	1 cut(s)	264
AfiI	CCNNNNNNNGG	2 cut(s)	270, 799
AgsI	TTSAA	5 cut(s)	100, 209, 565, 820, 944
AjnI	CCWGG	1 cut(s)	741
AleI	CACNNNNGTG	1 cut(s)	694
AluBI	AGCT	5 cut(s)	307, 541, 727, 761, 961
AluI	AGCT	5 cut(s)	307, 541, 727, 761, 961
Alw21I	GWGCWC	1 cut(s)	436
Alw26I	GTCTC	2 cut(s)	526, 709
Ama87I	CYCGRG	1 cut(s)	873
Aor13HI	TCCGGA	1 cut(s)	543
AoxI	GGCC	2 cut(s)	261, 734
ApeKI	GCWGC	4 cut(s)	143, 199, 538, 901
AseI	ATTAAT	1 cut(s)	767
Asp700I	GAANNNNTTC	2 cut(s)	556, 831
AspLEI	GCGC	2 cut(s)	405, 477
AspS9I	GGNCC	6 cut(s)	261, 412, 657, 734, 931, 1029
AvaI	CYCGRG	1 cut(s)	873
AvaII	GGWCC	4 cut(s)	412, 657, 931, 1029
BanII	GRGCYC	1 cut(s)	874
BbsI	GAAGAC	2 cut(s)	158, 639
Bbv12I	GWGCWC	1 cut(s)	436
BbvI	GCAGC	4 cut(s)	130, 211, 550, 888
BccI	CCATC	3 cut(s)	206, 451, 793
BciT130I	CCWGG	1 cut(s)	743
BciVI	GTATCC	1 cut(s)	331
BclI	TGATCA	1 cut(s)	963
BcoDI	GTCTC	2 cut(s)	526, 709
BfaI	CTAG	6 cut(s)	20, 291, 368, 728, 974, 983
BfoI	RGCGCY	1 cut(s)	478
BfuAI	ACCTGC	1 cut(s)	629
BfuI	GTATCC	1 cut(s)	331
BisI	GCNGC	5 cut(s)	144, 200, 264, 539, 902
BlsI	GCNGC	5 cut(s)	145, 201, 265, 540, 903
Bme1390I	CCNGG	1 cut(s)	743
Bme18I	GGWCC	4 cut(s)	412, 657, 931, 1029
BmeT110I	CYCGRG	1 cut(s)	873
BmgT120I	GGNCC	6 cut(s)	261, 412, 657, 734, 931, 1029
BmrFI	CCNGG	1 cut(s)	743
BmsI	GCATC	3 cut(s)	45, 211, 271
BpiI	GAAGAC	2 cut(s)	158, 639
BplI	GAGNNNNNCTC	2 cut(s)	325, 357
BpuEI	CTTGAG	2 cut(s)	779, 932
BsaJI	CCNNGG	1 cut(s)	741
BsaWI	WCCGGW	1 cut(s)	543
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 799
Bse1I	ACTGG	1 cut(s)	924
BseAI	TCCGGA	1 cut(s)	543
BseBI	CCWGG	1 cut(s)	743
BseDI	CCNNGG	1 cut(s)	741
BseGI	GGATG	4 cut(s)	286, 462, 520, 532
BseLI	CCNNNNNNNGG	2 cut(s)	270, 799
BseMII	CTCAG	2 cut(s)	356, 1011
BseNI	ACTGG	1 cut(s)	924
BseRI	GAGGAG	4 cut(s)	64, 178, 187, 262
BseXI	GCAGC	4 cut(s)	130, 211, 550, 888
BshFI	GGCC	2 cut(s)	263, 736
BsiHKAI	GWGCWC	1 cut(s)	436
BsiHKCI	CYCGRG	1 cut(s)	873
BsiSI	CCGG	1 cut(s)	544
BslI	CCNNNNNNNGG	2 cut(s)	270, 799
BsmAI	GTCTC	2 cut(s)	526, 709
BsmI	GAATGC	2 cut(s)	38, 400
BsnI	GGCC	2 cut(s)	263, 736
BsoBI	CYCGRG	1 cut(s)	873
Bsp1286I	GDGCHC	2 cut(s)	436, 874
Bsp13I	TCCGGA	1 cut(s)	543
Bsp143I	GATC	2 cut(s)	484, 963
BspACI	CCGC	1 cut(s)	264
BspANI	GGCC	2 cut(s)	263, 736
BspCNI	CTCAG	2 cut(s)	355, 1010
BspEI	TCCGGA	1 cut(s)	543
BspMI	ACCTGC	1 cut(s)	629
BsrI	ACTGG	1 cut(s)	924
BssECI	CCNNGG	1 cut(s)	741
BssMI	GATC	2 cut(s)	484, 963
Bst2UI	CCWGG	1 cut(s)	743
Bst4CI	ACNGT	1 cut(s)	573
Bst6I	CTCTTC	1 cut(s)	837
BstC8I	GCNNGC	4 cut(s)	309, 383, 432, 979
BstDEI	CTNAG	2 cut(s)	342, 997
BstF5I	GGATG	4 cut(s)	286, 462, 520, 532
BstH2I	RGCGCY	1 cut(s)	478
BstHHI	GCGC	2 cut(s)	405, 477
BstKTI	GATC	2 cut(s)	487, 966
BstMAI	GTCTC	2 cut(s)	526, 709
BstMBI	GATC	2 cut(s)	484, 963
BstMWI	GCNNNNNNNGC	2 cut(s)	378, 733
BstNI	CCWGG	1 cut(s)	743
BstSCI	CCNGG	1 cut(s)	741
BstV1I	GCAGC	4 cut(s)	130, 211, 550, 888
BstV2I	GAAGAC	2 cut(s)	158, 639
BstXI	CCANNNNNNTGG	1 cut(s)	592
BsuI	GTATCC	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	263, 736
BtsCI	GGATG	4 cut(s)	286, 462, 520, 532
BveI	ACCTGC	1 cut(s)	629
Cac8I	GCNNGC	4 cut(s)	309, 383, 432, 979
CfoI	GCGC	2 cut(s)	405, 477
Cfr13I	GGNCC	6 cut(s)	261, 412, 657, 734, 931, 1029
CseI	GACGC	1 cut(s)	644
CviAII	CATG	2 cut(s)	110, 628
DdeI	CTNAG	2 cut(s)	342, 997
DpnI	GATC	2 cut(s)	486, 965
DpnII	GATC	2 cut(s)	484, 963
DraI	TTTAAA	1 cut(s)	420
Eam1104I	CTCTTC	1 cut(s)	837
EarI	CTCTTC	1 cut(s)	837
Eco24I	GRGCYC	1 cut(s)	874
Eco32I	GATATC	1 cut(s)	708
Eco47I	GGWCC	4 cut(s)	412, 657, 931, 1029
Eco88I	CYCGRG	1 cut(s)	873
EcoO109I	RGGNCCY	4 cut(s)	412, 734, 931, 1029
EcoRII	CCWGG	1 cut(s)	741
EcoRV	GATATC	1 cut(s)	708
EcoT22I	ATGCAT	1 cut(s)	38
EcoT38I	GRGCYC	1 cut(s)	874
FaeI	CATG	2 cut(s)	113, 631
FalI	AAGNNNNNCTT	4 cut(s)	816, 848, 842, 874
FatI	CATG	2 cut(s)	109, 627
FbaI	TGATCA	1 cut(s)	963
Fnu4HI	GCNGC	5 cut(s)	144, 200, 264, 539, 902
FokI	GGATG	4 cut(s)	293, 469, 527, 539
FriOI	GRGCYC	1 cut(s)	874
Fsp4HI	GCNGC	5 cut(s)	144, 200, 264, 539, 902
FspBI	CTAG	6 cut(s)	20, 291, 368, 728, 974, 983
GlaI	GCGC	2 cut(s)	404, 476
GluI	GCNGC	5 cut(s)	144, 200, 264, 539, 902
HaeII	RGCGCY	1 cut(s)	478
HaeIII	GGCC	2 cut(s)	263, 736
HapII	CCGG	1 cut(s)	544
HgaI	GACGC	1 cut(s)	644
HhaI	GCGC	2 cut(s)	405, 477
Hin1II	CATG	2 cut(s)	113, 631
Hin6I	GCGC	2 cut(s)	403, 475
HinP1I	GCGC	2 cut(s)	403, 475
HinfI	GANTC	7 cut(s)	74, 301, 317, 350, 816, 827, 907
HpaII	CCGG	1 cut(s)	544
Hpy166II	GTNNAC	2 cut(s)	254, 595
Hpy188I	TCNGA	8 cut(s)	13, 79, 162, 345, 355, 489, 968, 1000
Hpy188III	TCNNGA	8 cut(s)	206, 321, 454, 544, 565, 796, 820, 911
Hpy8I	GTNNAC	2 cut(s)	254, 595
HpyAV	CCTTC	7 cut(s)	176, 226, 270, 355, 725, 766, 944
HpyCH4III	ACNGT	1 cut(s)	573
HpyCH4V	TGCA	4 cut(s)	36, 146, 284, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	378, 733
HpyF3I	CTNAG	2 cut(s)	342, 997
Hsp92II	CATG	2 cut(s)	113, 631
HspAI	GCGC	2 cut(s)	403, 475
Kpn2I	TCCGGA	1 cut(s)	543
Ksp22I	TGATCA	1 cut(s)	963
Kzo9I	GATC	2 cut(s)	484, 963
LmnI	GCTCC	4 cut(s)	235, 472, 546, 758
Lsp1109I	GCAGC	4 cut(s)	130, 211, 550, 888
LweI	GCATC	3 cut(s)	45, 211, 271
MaeI	CTAG	6 cut(s)	20, 291, 368, 728, 974, 983
MalI	GATC	2 cut(s)	486, 965
MboI	GATC	2 cut(s)	484, 963
MboII	GAAGA	4 cut(s)	163, 221, 644, 824
MfeI	CAATTG	1 cut(s)	747
MhlI	GDGCHC	2 cut(s)	436, 874
MlyI	GAGTC	2 cut(s)	83, 901
Mph1103I	ATGCAT	1 cut(s)	38
MroI	TCCGGA	1 cut(s)	543
MroXI	GAANNNNTTC	2 cut(s)	556, 831
MseI	TTAA	5 cut(s)	419, 608, 767, 806, 881
MslI	CAYNNNNRTG	3 cut(s)	455, 590, 694
MspA1I	CMGCKG	1 cut(s)	307
MspI	CCGG	1 cut(s)	544
MspR9I	CCNGG	1 cut(s)	743
MunI	CAATTG	1 cut(s)	747
Mva1269I	GAATGC	2 cut(s)	38, 400
MvaI	CCWGG	1 cut(s)	743
MwoI	GCNNNNNNNGC	2 cut(s)	378, 733
NdeII	GATC	2 cut(s)	484, 963
NlaIII	CATG	2 cut(s)	113, 631
NsiI	ATGCAT	1 cut(s)	38
OliI	CACNNNNGTG	1 cut(s)	694
PaeR7I	CTCGAG	1 cut(s)	873
PaqCI	CACCTGC	1 cut(s)	629
PctI	GAATGC	2 cut(s)	38, 400
PdmI	GAANNNNTTC	2 cut(s)	556, 831
PfeI	GAWTC	5 cut(s)	301, 317, 350, 816, 827
PkrI	GCNGC	5 cut(s)	145, 201, 265, 540, 903
PleI	GAGTC	2 cut(s)	82, 901
PpsI	GAGTC	2 cut(s)	82, 901
PpuMI	RGGWCCY	3 cut(s)	412, 931, 1029
PshBI	ATTAAT	1 cut(s)	767
Psp5II	RGGWCCY	3 cut(s)	412, 931, 1029
Psp6I	CCWGG	1 cut(s)	741
PspGI	CCWGG	1 cut(s)	741
PspPI	GGNCC	6 cut(s)	261, 412, 657, 734, 931, 1029
PspPPI	RGGWCCY	3 cut(s)	412, 931, 1029
PspXI	VCTCGAGB	1 cut(s)	873
PvuII	CAGCTG	1 cut(s)	307
RseI	CAYNNNNRTG	3 cut(s)	455, 590, 694
SaqAI	TTAA	5 cut(s)	419, 608, 767, 806, 881
SatI	GCNGC	5 cut(s)	144, 200, 264, 539, 902
Sau3AI	GATC	2 cut(s)	484, 963
Sau96I	GGNCC	6 cut(s)	261, 412, 657, 734, 931, 1029
SchI	GAGTC	2 cut(s)	83, 901
ScrFI	CCNGG	1 cut(s)	743
SduI	GDGCHC	2 cut(s)	436, 874
SfaNI	GCATC	3 cut(s)	45, 211, 271
Sfr274I	CTCGAG	1 cut(s)	873
SinI	GGWCC	4 cut(s)	412, 657, 931, 1029
SlaI	CTCGAG	1 cut(s)	873
SmiMI	CAYNNNNRTG	3 cut(s)	455, 590, 694
SmlI	CTYRAG	3 cut(s)	794, 873, 911
SmoI	CTYRAG	3 cut(s)	794, 873, 911
SsiI	CCGC	1 cut(s)	264
SspMI	CTAG	6 cut(s)	20, 291, 368, 728, 974, 983
StyD4I	CCNGG	1 cut(s)	741
TaaI	ACNGT	1 cut(s)	573
TaqI	TCGA	2 cut(s)	39, 874
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	5 cut(s)	301, 317, 350, 816, 827
Tru1I	TTAA	5 cut(s)	419, 608, 767, 806, 881
Tru9I	TTAA	5 cut(s)	419, 608, 767, 806, 881
TseI	GCWGC	4 cut(s)	143, 199, 538, 901
TspDTI	ATGAA	3 cut(s)	45, 407, 785
TspGWI	ACGGA	2 cut(s)	346, 612
VpaK11BI	GGWCC	4 cut(s)	412, 657, 931, 1029
VspI	ATTAAT	1 cut(s)	767
XhoI	CTCGAG	1 cut(s)	873
XmnI	GAANNNNTTC	2 cut(s)	556, 831
XspI	CTAG	6 cut(s)	20, 291, 368, 728, 974, 983
Zsp2I	ATGCAT	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.