Rh1AG126900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0012691
Physical Location & Seq
Forward (+)
23753609 .. 23755419
1811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG126900.1

Sequence Viewer

Length: 867 bp
ATGAAAACTACCGACGGTCCCATCCGCTGCTCGTTTTGCTTATATGTGTTAAACGATAGAACCCACAAGTTGCATGTTTGTACGGCGCCTAAGATATTTTCCGGCAGTAAGAACCAGGTAGATGATGATTTTCAGTCCGATGATTCCCGGAGGCGTTCTCAACAATTCATCGATCTTGAGAAAGGTCACGGAGCTGGAGATGATAACAGCTCGGGTACCAAAAATGCACACCAAGATCAGAGGAGTCACGAAGAAAACTTGGATCTTGAGGAAGGTGGGCAAATCCGTGGTAGTGCTAAAGCGCCTGCTCGGGATTTCTTGCAGTGTTTTTGGCCCAAGCATGCAGTGCCTGGTCATCTCGTCGATACAGCTTTTGAAGGAGGCACCAACGCCTTGGACGCAACTCGCATACCTGGTCGTGGTGGCCACGGCCGTGACATTGCGGATGTTACTGTGAATGTTGAGACAAGAAAGCAAATTCTTGACAATGAAAGGAGGGAGGGGAGCACTCAGAAGAAGTCCGGGAGGCAATATAATGAAGAAATGACTATCTTAAGGAAGGCTGAGATTGAGCGGAGAAAACAGTGGGATACAAGGAGGAAGATGAATGCTAGGAAGACATGGGAGGGGAGCAGGAGCACTGAGGAGGAGTCAGAGAGGCAGTGTGATGCGATTGACAGAAGAAAACAGAGGGATATCAGGAGGAAGATAAATGCTAGGAAGACATGGGACGGCAGCAGTGAGACAGAATCAGAGTGGCAGCATGATGCAGAAGAAATATCTATTTTAAGGAGGGATGAAAATGAGAGGAGGAAACAGAGGGATGCAAGGAAGAATAGAAATGCAAGGAAGACATGTGAGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

33.39

Weight (kDa)

9.11

Isoelectric Point (pI)

60.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 215
AccB1I GGYRCC 3 cut(s) 85, 215, 383
AccBSI CCGCTC 1 cut(s) 574
AciI CCGC 3 cut(s) 25, 443, 574
AclWI GGATC 1 cut(s) 270
AcoI YGGCCR 2 cut(s) 424, 430
AcsI RAATTY 1 cut(s) 477
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 2 cut(s) 82, 217
AfiI CCNNNNNNNGG 1 cut(s) 419
AflII CTTAAG 1 cut(s) 553
AflIII ACRYGT 1 cut(s) 854
AgsI TTSAA 1 cut(s) 377
AjnI CCWGG 3 cut(s) 114, 349, 412
AleI CACNNNNGTG 1 cut(s) 432
AluBI AGCT 3 cut(s) 194, 210, 371
AluI AGCT 3 cut(s) 194, 210, 371
Alw21I GWGCWC 2 cut(s) 509, 641
Alw26I GTCTC 2 cut(s) 458, 737
AlwI GGATC 1 cut(s) 270
AlwNI CAGNNNCTG 1 cut(s) 350
Ama87I CYCGRG 2 cut(s) 211, 309
AoxI GGCC 3 cut(s) 332, 424, 430
ApeKI GCWGC 3 cut(s) 27, 735, 760
ApoI RAATTY 1 cut(s) 477
Asp718I GGTACC 1 cut(s) 215
AspLEI GCGC 2 cut(s) 88, 304
AspS9I GGNCC 2 cut(s) 17, 333
AsuC2I CCSGG 2 cut(s) 148, 523
AvaI CYCGRG 2 cut(s) 211, 309
AvaII GGWCC 1 cut(s) 17
BalI TGGCCA 1 cut(s) 426
BanI GGYRCC 3 cut(s) 85, 215, 383
BbsI GAAGAC 3 cut(s) 623, 728, 857
Bbv12I GWGCWC 2 cut(s) 509, 641
BbvI GCAGC 3 cut(s) 14, 747, 772
BccI CCATC 1 cut(s) 29
BceAI ACGGC 4 cut(s) 99, 417, 445, 748
BciT130I CCWGG 3 cut(s) 116, 351, 414
BciVI GTATCC 1 cut(s) 583
BcnI CCSGG 2 cut(s) 148, 523
BcoDI GTCTC 2 cut(s) 458, 737
BfaI CTAG 2 cut(s) 612, 717
BfoI RGCGCY 2 cut(s) 89, 305
BfrI CTTAAG 1 cut(s) 553
BfuI GTATCC 1 cut(s) 583
BisI GCNGC 3 cut(s) 28, 736, 761
BlsI GCNGC 3 cut(s) 29, 737, 762
Bme1390I CCNGG 5 cut(s) 116, 148, 351, 414, 523
Bme18I GGWCC 1 cut(s) 17
BmeT110I CYCGRG 2 cut(s) 211, 309
BmgT120I GGNCC 2 cut(s) 17, 333
BmiI GGNNCC 4 cut(s) 19, 87, 217, 385
BmrFI CCNGG 5 cut(s) 116, 148, 351, 414, 523
BmsI GCATC 3 cut(s) 658, 757, 814
BpiI GAAGAC 3 cut(s) 623, 728, 857
BplI GAGNNNNNCTC 2 cut(s) 142, 174
BpmI CTGGAG 1 cut(s) 216
BpuEI CTTGAG 2 cut(s) 197, 287
BpuMI CCSGG 2 cut(s) 148, 523
Bsa29I ATCGAT 1 cut(s) 171
BsaHI GRCGYC 1 cut(s) 86
BsaJI CCNNGG 3 cut(s) 286, 393, 427
Bsc4I CCNNNNNNNGG 1 cut(s) 419
Bse3DI GCAATG 1 cut(s) 438
BseBI CCWGG 3 cut(s) 116, 351, 414
BseCI ATCGAT 1 cut(s) 171
BseDI CCNNGG 3 cut(s) 286, 393, 427
BseGI GGATG 4 cut(s) 21, 451, 802, 829
BseLI CCNNNNNNNGG 1 cut(s) 419
BseMI GCAATG 1 cut(s) 438
BseMII CTCAG 3 cut(s) 524, 555, 633
BseRI GAGGAG 4 cut(s) 256, 659, 662, 823
BseX3I CGGCCG 1 cut(s) 430
BseXI GCAGC 3 cut(s) 14, 747, 772
Bsh1285I CGRYCG 1 cut(s) 433
BshFI GGCC 3 cut(s) 334, 426, 432
BshNI GGYRCC 3 cut(s) 85, 215, 383
BshVI ATCGAT 1 cut(s) 171
BsiEI CGRYCG 1 cut(s) 433
BsiHKAI GWGCWC 2 cut(s) 509, 641
BsiHKCI CYCGRG 2 cut(s) 211, 309
BsiSI CCGG 3 cut(s) 102, 148, 522
BslFI GGGAC 2 cut(s) 3, 743
BslI CCNNNNNNNGG 1 cut(s) 419
BsmAI GTCTC 2 cut(s) 458, 737
BsmFI GGGAC 2 cut(s) 3, 743
BsmI GAATGC 1 cut(s) 613
BsnI GGCC 3 cut(s) 334, 426, 432
BsoBI CYCGRG 2 cut(s) 211, 309
Bsp1286I GDGCHC 2 cut(s) 509, 641
Bsp143I GATC 3 cut(s) 172, 235, 262
BspACI CCGC 3 cut(s) 25, 443, 574
BspANI GGCC 3 cut(s) 334, 426, 432
BspCNI CTCAG 3 cut(s) 523, 556, 634
BspDI ATCGAT 1 cut(s) 171
BspLI GGNNCC 4 cut(s) 19, 87, 217, 385
BspPI GGATC 1 cut(s) 270
BspT107I GGYRCC 3 cut(s) 85, 215, 383
BspTI CTTAAG 1 cut(s) 553
BsrBI CCGCTC 1 cut(s) 574
BsrDI GCAATG 1 cut(s) 438
BssECI CCNNGG 3 cut(s) 286, 393, 427
BssMI GATC 3 cut(s) 172, 235, 262
BssNI GRCGYC 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 393
Bst2UI CCWGG 3 cut(s) 116, 351, 414
Bst4CI ACNGT 3 cut(s) 17, 454, 585
BstACI GRCGYC 1 cut(s) 86
BstAFI CTTAAG 1 cut(s) 553
BstAPI GCANNNNNTGC 1 cut(s) 346
BstC8I GCNNGC 2 cut(s) 306, 342
BstDEI CTNAG 4 cut(s) 90, 510, 564, 642
BstDSI CCRYGG 2 cut(s) 286, 427
BstF5I GGATG 4 cut(s) 21, 451, 802, 829
BstH2I RGCGCY 2 cut(s) 89, 305
BstHHI GCGC 2 cut(s) 88, 304
BstKTI GATC 3 cut(s) 175, 238, 265
BstMAI GTCTC 2 cut(s) 458, 737
BstMBI GATC 3 cut(s) 172, 235, 262
BstMCI CGRYCG 1 cut(s) 433
BstMWI GCNNNNNNNGC 3 cut(s) 36, 346, 398
BstNI CCWGG 3 cut(s) 116, 351, 414
BstNSI RCATGY 3 cut(s) 77, 344, 858
BstSCI CCNGG 5 cut(s) 114, 146, 349, 412, 521
BstV1I GCAGC 3 cut(s) 14, 747, 772
BstV2I GAAGAC 3 cut(s) 623, 728, 857
BstX2I RGATCY 1 cut(s) 262
BstXI CCANNNNNNTGG 1 cut(s) 394
BstYI RGATCY 1 cut(s) 262
BstZI CGGCCG 1 cut(s) 430
Bsu15I ATCGAT 1 cut(s) 171
BsuI GTATCC 1 cut(s) 583
BsuRI GGCC 3 cut(s) 334, 426, 432
BsuTUI ATCGAT 1 cut(s) 171
BtgI CCRYGG 2 cut(s) 286, 427
BtsCI GGATG 4 cut(s) 21, 451, 802, 829
BtsI GCAGTG 4 cut(s) 329, 351, 668, 745
BtsIMutI CAGTG 6 cut(s) 329, 351, 590, 639, 668, 745
Cac8I GCNNGC 2 cut(s) 306, 342
CaiI CAGNNNCTG 1 cut(s) 350
CfoI GCGC 2 cut(s) 88, 304
Cfr13I GGNCC 2 cut(s) 17, 333
ClaI ATCGAT 1 cut(s) 171
CseI GACGC 1 cut(s) 407
CsiI ACCWGGT 2 cut(s) 114, 412
Csp6I GTAC 2 cut(s) 81, 216
CviAII CATG 6 cut(s) 74, 341, 621, 726, 764, 855
CviJI RGCY 7 cut(s) 194, 210, 334, 371, 426, 432, 563
CviKI_1 RGCY 7 cut(s) 194, 210, 334, 371, 426, 432, 563
CviQI GTAC 2 cut(s) 81, 216
DdeI CTNAG 4 cut(s) 90, 510, 564, 642
DinI GGCGCC 1 cut(s) 87
DpnI GATC 3 cut(s) 174, 237, 264
DpnII GATC 3 cut(s) 172, 235, 262
EaeI YGGCCR 2 cut(s) 424, 430
EagI CGGCCG 1 cut(s) 430
EclXI CGGCCG 1 cut(s) 430
Eco130I CCWWGG 1 cut(s) 393
Eco32I GATATC 1 cut(s) 697
Eco47I GGWCC 1 cut(s) 17
Eco52I CGGCCG 1 cut(s) 430
Eco88I CYCGRG 2 cut(s) 211, 309
EcoRII CCWGG 3 cut(s) 114, 349, 412
EcoRV GATATC 1 cut(s) 697
EcoT14I CCWWGG 1 cut(s) 393
EgeI GGCGCC 1 cut(s) 87
EheI GGCGCC 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 393
FaeI CATG 6 cut(s) 77, 344, 624, 729, 767, 858
FaqI GGGAC 2 cut(s) 3, 743
FatI CATG 6 cut(s) 73, 340, 620, 725, 763, 854
Fnu4HI GCNGC 3 cut(s) 28, 736, 761
FokI GGATG 4 cut(s) 8, 458, 809, 836
Fsp4HI GCNGC 3 cut(s) 28, 736, 761
FspBI CTAG 2 cut(s) 612, 717
GlaI GCGC 2 cut(s) 87, 303
GluI GCNGC 3 cut(s) 28, 736, 761
GsuI CTGGAG 1 cut(s) 216
HaeII RGCGCY 2 cut(s) 89, 305
HaeIII GGCC 3 cut(s) 334, 426, 432
HapII CCGG 3 cut(s) 102, 148, 522
HgaI GACGC 1 cut(s) 407
HhaI GCGC 2 cut(s) 88, 304
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 6 cut(s) 77, 344, 624, 729, 767, 858
Hin6I GCGC 2 cut(s) 86, 302
HinP1I GCGC 2 cut(s) 86, 302
HinfI GANTC 4 cut(s) 143, 244, 650, 749
HpaII CCGG 3 cut(s) 102, 148, 522
Hpy188I TCNGA 5 cut(s) 139, 240, 513, 655, 754
Hpy188III TCNNGA 6 cut(s) 176, 248, 266, 311, 482, 700
Hpy99I CGWCG 2 cut(s) 17, 365
HpyAV CCTTC 3 cut(s) 266, 371, 553
HpyCH4III ACNGT 3 cut(s) 17, 454, 585
HpyCH4V TGCA 7 cut(s) 73, 227, 322, 344, 770, 827, 845
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 346, 398
HpyF3I CTNAG 4 cut(s) 90, 510, 564, 642
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 6 cut(s) 77, 344, 624, 729, 767, 858
HspAI GCGC 2 cut(s) 86, 302
KasI GGCGCC 1 cut(s) 85
KpnI GGTACC 1 cut(s) 219
Kzo9I GATC 3 cut(s) 172, 235, 262
LmnI GCTCC 4 cut(s) 191, 504, 630, 636
Lsp1109I GCAGC 3 cut(s) 14, 747, 772
LweI GCATC 3 cut(s) 658, 757, 814
MabI ACCWGGT 2 cut(s) 114, 412
MaeI CTAG 2 cut(s) 612, 717
MaeIII GTNAC 4 cut(s) 185, 245, 434, 448
MalI GATC 3 cut(s) 174, 237, 264
MbiI CCGCTC 1 cut(s) 574
MboI GATC 3 cut(s) 172, 235, 262
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 2 cut(s) 509, 641
MlsI TGGCCA 1 cut(s) 426
MluCI AATT 2 cut(s) 164, 477
MluNI TGGCCA 1 cut(s) 426
Mly113I GGCGCC 1 cut(s) 86
MlyI GAGTC 2 cut(s) 253, 659
Mox20I TGGCCA 1 cut(s) 426
MscI TGGCCA 1 cut(s) 426
MseI TTAA 3 cut(s) 50, 554, 788
MslI CAYNNNNRTG 1 cut(s) 432
Msp20I TGGCCA 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 27
MspCI CTTAAG 1 cut(s) 553
MspI CCGG 3 cut(s) 102, 148, 522
MspR9I CCNGG 5 cut(s) 116, 148, 351, 414, 523
Mva1269I GAATGC 1 cut(s) 613
MvaI CCWGG 3 cut(s) 116, 351, 414
MwoI GCNNNNNNNGC 3 cut(s) 36, 346, 398
NarI GGCGCC 1 cut(s) 86
NciI CCSGG 2 cut(s) 148, 523
NdeII GATC 3 cut(s) 172, 235, 262
NlaIII CATG 6 cut(s) 77, 344, 624, 729, 767, 858
NlaIV GGNNCC 4 cut(s) 19, 87, 217, 385
NmuCI GTSAC 3 cut(s) 185, 245, 434
NspI RCATGY 3 cut(s) 77, 344, 858
OliI CACNNNNGTG 1 cut(s) 432
PaeI GCATGC 1 cut(s) 344
PciI ACATGT 1 cut(s) 854
PctI GAATGC 1 cut(s) 613
PfeI GAWTC 2 cut(s) 143, 749
PfoI TCCNGGA 2 cut(s) 146, 521
PkrI GCNGC 3 cut(s) 29, 737, 762
PleI GAGTC 2 cut(s) 252, 658
PluTI GGCGCC 1 cut(s) 89
PpsI GAGTC 2 cut(s) 252, 658
PscI ACATGT 1 cut(s) 854
Psp6I CCWGG 3 cut(s) 114, 349, 412
PspGI CCWGG 3 cut(s) 114, 349, 412
PspN4I GGNNCC 4 cut(s) 19, 87, 217, 385
PspPI GGNCC 2 cut(s) 17, 333
PstNI CAGNNNCTG 1 cut(s) 350
PsuI RGATCY 1 cut(s) 262
RsaI GTAC 2 cut(s) 82, 217
RsaNI GTAC 2 cut(s) 81, 216
RseI CAYNNNNRTG 1 cut(s) 432
SaqAI TTAA 3 cut(s) 50, 554, 788
SatI GCNGC 3 cut(s) 28, 736, 761
Sau3AI GATC 3 cut(s) 172, 235, 262
Sau96I GGNCC 2 cut(s) 17, 333
SchI GAGTC 2 cut(s) 253, 659
ScrFI CCNGG 5 cut(s) 116, 148, 351, 414, 523
SduI GDGCHC 2 cut(s) 509, 641
SetI ASST 8 cut(s) 120, 187, 196, 212, 277, 373, 415, 866
SexAI ACCWGGT 2 cut(s) 114, 412
SfaNI GCATC 3 cut(s) 658, 757, 814
SfoI GGCGCC 1 cut(s) 87
SinI GGWCC 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 432
SmlI CTYRAG 3 cut(s) 176, 266, 553
SmoI CTYRAG 3 cut(s) 176, 266, 553
SphI GCATGC 1 cut(s) 344
Sse9I AATT 2 cut(s) 164, 477
SsiI CCGC 3 cut(s) 25, 443, 574
SspDI GGCGCC 1 cut(s) 85
SspMI CTAG 2 cut(s) 612, 717
StyD4I CCNGG 5 cut(s) 114, 146, 349, 412, 521
StyI CCWWGG 1 cut(s) 393
TaaI ACNGT 3 cut(s) 17, 454, 585
TaqI TCGA 2 cut(s) 171, 363
TasI AATT 2 cut(s) 164, 477
TfiI GAWTC 2 cut(s) 143, 749
Tru1I TTAA 3 cut(s) 50, 554, 788
Tru9I TTAA 3 cut(s) 50, 554, 788
TscAI CASTG 6 cut(s) 329, 351, 590, 646, 668, 745
TseFI GTSAC 3 cut(s) 185, 245, 434
TseI GCWGC 3 cut(s) 27, 735, 760
Tsp45I GTSAC 3 cut(s) 185, 245, 434
TspDTI ATGAA 6 cut(s) 17, 157, 504, 552, 620, 813
TspGWI ACGGA 2 cut(s) 204, 275
TspRI CASTG 6 cut(s) 329, 351, 590, 646, 668, 745
Vha464I CTTAAG 1 cut(s) 553
VpaK11BI GGWCC 1 cut(s) 17
XapI RAATTY 1 cut(s) 477
XceI RCATGY 3 cut(s) 77, 344, 858
XspI CTAG 2 cut(s) 612, 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.