Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0012691

Physical Location & Seq

Genomic Coordinates Forward (+)

318060 .. 322806

Gene Structure 4747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG001500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGTTTTTTCTGAATTACTAAACAATAATGAATGCATCGAAAGGGAGAGGAGAAAGGGGCAAACCGAAAGGGAGTCTGATAGCCAATTTTATGATTTCAAAATATCTGATGTAAGGAATGAGAATGTGAGAGAGCAGAGGGCTGCAAGGAAGACAACTCAGAGGAGGGAGGGGAGAACTGAAACGGAGTCTGATAGGCAGTCTCAGGATGAAGAAATATCTGATGTCATTCATGAGAGAGAGCAGAGGGCTGCAAGGAAGACAATTCAGAGGAGGGAGAGGAGAACTGAAGGGGTATCTGTGAGGGCGCAGCATCTTGAAGATGGAATGGCTCAAATAAGGAAGGAGCAGAATGAGAGGAGTAAACAGAGGGCCACAAGGAGGGAAAGGGATGCAAGGACTAGAATTGAGAATCAGCTGGCATACGAATCAAGACCAAAATGGAGGGATACTCAGAGGGATTCAGAAAAGAAGGAACTAGGCTTGGTTCACCAGCAAGAAATGAATGCAAAGCGCAGGGAGGACCTTTTAAAAGAGAGGCGAGCACTCACACGGGCAGACATCAGGATGGAATTACAGAGGGAGCGCCTGAAAGATCAGATAATAAAATGGCATAAGGACTTGGATGACCTAATGGATGAGAGACAGCAGCTCCGGAAACGAAATGCTTCTCTCAAGAAACTATGGTGGATTTCCATAGTGGTGGACGGAGTAATTTTAACTTGTTTGGATTTATACATAGAAGACGCAGGTGGCATACGCTATTGGACCTCTTTTGTTGTTTACATGATACTTTTTTCACTATGGTGGGGTATAATATCTAAGAGACAACAGAAGCTAGATGGGCCTCCCGAGGCAATTGAGTGTGGAGCTGGATTAATGAAGGGTCTTTGTGTGATTGCCCTTAAGATGGTGTTAATCAACAGATTCAAGAAAGAATCTCTTCTCTATTATGTTGTCAAGTGTTTCTTTTATGTCGGGGCTCGAGGTTTAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

332

Amino Acids

39.75

Weight (kDa)

9.58

Isoelectric Point (pI)

59.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012691)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0384821 RchiOBHm_Chr4g0384861
rosa_laevigata	RLG00000010264 RLG00000029711 RLG00000029712
rosa_multiflora	Rmu_co8480945.1_g000001
rosa_roxburghii	Rroxscaffold_5G00332890 Rroxscaffold_5G00332900
rosa_rugosa	Rorug01G0105400
rosa_samantha	Rh1AG126900 Rh1CG120700 Rh1DG131800 Rh1DG131900 Rh4AG002000 Rh4CG001500 Rh4CG001600 Rh4DG001600 Rh7DG319100
rosa_wichuraiana	Rw4G000740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	740
Acc36I	ACCTGC	1 cut(s)	740
AccIII	TCCGGA	1 cut(s)	654
AcuI	CTGAAG	1 cut(s)	309
AfiI	CCNNNNNNNGG	2 cut(s)	381, 910
AflII	CTTAAG	1 cut(s)	905
AgsI	TTSAA	3 cut(s)	100, 320, 931
AleI	CACNNNNGTG	1 cut(s)	805
AluBI	AGCT	4 cut(s)	418, 652, 838, 872
AluI	AGCT	4 cut(s)	418, 652, 838, 872
Alw21I	GWGCWC	1 cut(s)	547
Alw26I	GTCTC	3 cut(s)	207, 637, 820
Ama87I	CYCGRG	2 cut(s)	851, 984
Aor13HI	TCCGGA	1 cut(s)	654
AoxI	GGCC	2 cut(s)	372, 845
ApeKI	GCWGC	4 cut(s)	143, 251, 310, 649
AseI	ATTAAT	1 cut(s)	878
Asp700I	GAANNNNTTC	2 cut(s)	667, 942
AspLEI	GCGC	3 cut(s)	310, 516, 588
AspS9I	GGNCC	4 cut(s)	372, 523, 768, 845
AsuHPI	GGTGA	1 cut(s)	482
AvaI	CYCGRG	2 cut(s)	851, 984
AvaII	GGWCC	2 cut(s)	523, 768
BanII	GRGCYC	1 cut(s)	985
BbsI	GAAGAC	3 cut(s)	158, 266, 750
Bbv12I	GWGCWC	1 cut(s)	547
BbvI	GCAGC	4 cut(s)	130, 238, 322, 661
BccI	CCATC	4 cut(s)	317, 562, 836, 904
BciVI	GTATCC	1 cut(s)	442
BcoDI	GTCTC	3 cut(s)	207, 637, 820
BfaI	CTAG	3 cut(s)	402, 479, 839
BfoI	RGCGCY	1 cut(s)	589
BfrI	CTTAAG	1 cut(s)	905
BfuAI	ACCTGC	1 cut(s)	740
BfuI	GTATCC	1 cut(s)	442
BisI	GCNGC	4 cut(s)	144, 252, 311, 650
BlsI	GCNGC	4 cut(s)	145, 253, 312, 651
Bme18I	GGWCC	2 cut(s)	523, 768
BmeT110I	CYCGRG	2 cut(s)	851, 984
BmgT120I	GGNCC	4 cut(s)	372, 523, 768, 845
BmsI	GCATC	3 cut(s)	45, 322, 382
BpiI	GAAGAC	3 cut(s)	158, 266, 750
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
BpuEI	CTTGAG	1 cut(s)	659
BsaJI	CCNNGG	1 cut(s)	852
BsaWI	WCCGGW	1 cut(s)	654
BsaXI	ACNNNNNCTCC	2 cut(s)	636, 666
Bsc4I	CCNNNNNNNGG	2 cut(s)	381, 910
BseAI	TCCGGA	1 cut(s)	654
BseDI	CCNNGG	1 cut(s)	852
BseGI	GGATG	5 cut(s)	214, 397, 573, 631, 643
BseLI	CCNNNNNNNGG	2 cut(s)	381, 910
BseMII	CTCAG	3 cut(s)	173, 218, 467
BseRI	GAGGAG	5 cut(s)	64, 178, 286, 295, 373
BseXI	GCAGC	4 cut(s)	130, 238, 322, 661
BshFI	GGCC	2 cut(s)	374, 847
BsiHKAI	GWGCWC	1 cut(s)	547
BsiHKCI	CYCGRG	2 cut(s)	851, 984
BsiSI	CCGG	1 cut(s)	655
BslI	CCNNNNNNNGG	2 cut(s)	381, 910
BsmAI	GTCTC	3 cut(s)	207, 637, 820
BsmI	GAATGC	2 cut(s)	38, 511
BsnI	GGCC	2 cut(s)	374, 847
BsoBI	CYCGRG	2 cut(s)	851, 984
Bsp1286I	GDGCHC	2 cut(s)	547, 985
Bsp13I	TCCGGA	1 cut(s)	654
Bsp143I	GATC	1 cut(s)	595
BspANI	GGCC	2 cut(s)	374, 847
BspCNI	CTCAG	3 cut(s)	172, 217, 466
BspEI	TCCGGA	1 cut(s)	654
BspHI	TCATGA	1 cut(s)	232
BspMI	ACCTGC	1 cut(s)	740
BspTI	CTTAAG	1 cut(s)	905
BssECI	CCNNGG	1 cut(s)	852
BssMI	GATC	1 cut(s)	595
Bst6I	CTCTTC	1 cut(s)	948
BstAFI	CTTAAG	1 cut(s)	905
BstC8I	GCNNGC	2 cut(s)	420, 543
BstDEI	CTNAG	4 cut(s)	159, 204, 453, 822
BstF5I	GGATG	5 cut(s)	214, 397, 573, 631, 643
BstH2I	RGCGCY	1 cut(s)	589
BstHHI	GCGC	3 cut(s)	310, 516, 588
BstKTI	GATC	1 cut(s)	598
BstMAI	GTCTC	3 cut(s)	207, 637, 820
BstMBI	GATC	1 cut(s)	595
BstMWI	GCNNNNNNNGC	1 cut(s)	844
BstV1I	GCAGC	4 cut(s)	130, 238, 322, 661
BstV2I	GAAGAC	3 cut(s)	158, 266, 750
BstXI	CCANNNNNNTGG	1 cut(s)	703
BsuI	GTATCC	1 cut(s)	442
BsuRI	GGCC	2 cut(s)	374, 847
BtsCI	GGATG	5 cut(s)	214, 397, 573, 631, 643
BveI	ACCTGC	1 cut(s)	740
Cac8I	GCNNGC	2 cut(s)	420, 543
CciI	TCATGA	1 cut(s)	232
CfoI	GCGC	3 cut(s)	310, 516, 588
Cfr13I	GGNCC	4 cut(s)	372, 523, 768, 845
CseI	GACGC	1 cut(s)	755
CviAII	CATG	2 cut(s)	233, 787
DdeI	CTNAG	4 cut(s)	159, 204, 453, 822
DpnI	GATC	1 cut(s)	597
DpnII	GATC	1 cut(s)	595
DraI	TTTAAA	1 cut(s)	531
Eam1104I	CTCTTC	1 cut(s)	948
EarI	CTCTTC	1 cut(s)	948
Eco24I	GRGCYC	1 cut(s)	985
Eco47I	GGWCC	2 cut(s)	523, 768
Eco57I	CTGAAG	1 cut(s)	309
Eco88I	CYCGRG	2 cut(s)	851, 984
EcoO109I	RGGNCCY	1 cut(s)	523
EcoT22I	ATGCAT	1 cut(s)	38
EcoT38I	GRGCYC	1 cut(s)	985
FaeI	CATG	2 cut(s)	236, 790
FalI	AAGNNNNNCTT	4 cut(s)	927, 959, 953, 985
FatI	CATG	2 cut(s)	232, 786
Fnu4HI	GCNGC	4 cut(s)	144, 252, 311, 650
FokI	GGATG	5 cut(s)	221, 404, 580, 638, 650
FriOI	GRGCYC	1 cut(s)	985
Fsp4HI	GCNGC	4 cut(s)	144, 252, 311, 650
FspBI	CTAG	3 cut(s)	402, 479, 839
GlaI	GCGC	3 cut(s)	309, 515, 587
GluI	GCNGC	4 cut(s)	144, 252, 311, 650
HaeII	RGCGCY	1 cut(s)	589
HaeIII	GGCC	2 cut(s)	374, 847
HapII	CCGG	1 cut(s)	655
HgaI	GACGC	1 cut(s)	755
HhaI	GCGC	3 cut(s)	310, 516, 588
Hin1II	CATG	2 cut(s)	236, 790
Hin6I	GCGC	3 cut(s)	308, 514, 586
HinP1I	GCGC	3 cut(s)	308, 514, 586
HinfI	GANTC	7 cut(s)	74, 188, 412, 428, 461, 927, 938
HpaII	CCGG	1 cut(s)	655
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	4 cut(s)	365, 490, 706, 784
Hpy188III	TCNNGA	9 cut(s)	206, 233, 317, 432, 565, 655, 676, 851, 931
Hpy8I	GTNNAC	4 cut(s)	365, 490, 706, 784
HpyAV	CCTTC	4 cut(s)	284, 337, 466, 877
HpyCH4V	TGCA	5 cut(s)	36, 146, 254, 395, 509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	844
HpyF3I	CTNAG	4 cut(s)	159, 204, 453, 822
Hsp92II	CATG	2 cut(s)	236, 790
HspAI	GCGC	3 cut(s)	308, 514, 586
Kpn2I	TCCGGA	1 cut(s)	654
Kzo9I	GATC	1 cut(s)	595
LmnI	GCTCC	4 cut(s)	346, 583, 657, 869
LpnPI	CCDG	9 cut(s)	191, 404, 502, 506, 550, 602, 668, 735, 858
Lsp1109I	GCAGC	4 cut(s)	130, 238, 322, 661
LweI	GCATC	3 cut(s)	45, 322, 382
MaeI	CTAG	3 cut(s)	402, 479, 839
MalI	GATC	1 cut(s)	597
MboI	GATC	1 cut(s)	595
MboII	GAAGA	6 cut(s)	163, 224, 271, 332, 755, 935
MfeI	CAATTG	1 cut(s)	858
MhlI	GDGCHC	2 cut(s)	547, 985
MluCI	AATT	8 cut(s)	14, 86, 264, 405, 572, 714, 858, 993
MlyI	GAGTC	2 cut(s)	83, 197
Mph1103I	ATGCAT	1 cut(s)	38
MroI	TCCGGA	1 cut(s)	654
MroXI	GAANNNNTTC	2 cut(s)	667, 942
MseI	TTAA	6 cut(s)	530, 719, 878, 906, 917, 992
MslI	CAYNNNNRTG	3 cut(s)	566, 701, 805
MspA1I	CMGCKG	1 cut(s)	418
MspCI	CTTAAG	1 cut(s)	905
MspI	CCGG	1 cut(s)	655
MunI	CAATTG	1 cut(s)	858
Mva1269I	GAATGC	2 cut(s)	38, 511
MwoI	GCNNNNNNNGC	1 cut(s)	844
NdeII	GATC	1 cut(s)	595
NlaIII	CATG	2 cut(s)	236, 790
NsiI	ATGCAT	1 cut(s)	38
OliI	CACNNNNGTG	1 cut(s)	805
PaeR7I	CTCGAG	1 cut(s)	984
PagI	TCATGA	1 cut(s)	232
PaqCI	CACCTGC	1 cut(s)	740
PctI	GAATGC	2 cut(s)	38, 511
PdmI	GAANNNNTTC	2 cut(s)	667, 942
PfeI	GAWTC	5 cut(s)	412, 428, 461, 927, 938
PkrI	GCNGC	4 cut(s)	145, 253, 312, 651
PleI	GAGTC	2 cut(s)	82, 196
PpsI	GAGTC	2 cut(s)	82, 196
PpuMI	RGGWCCY	1 cut(s)	523
PshBI	ATTAAT	1 cut(s)	878
Psp5II	RGGWCCY	1 cut(s)	523
PspPI	GGNCC	4 cut(s)	372, 523, 768, 845
PspPPI	RGGWCCY	1 cut(s)	523
PspXI	VCTCGAGB	1 cut(s)	984
PvuII	CAGCTG	1 cut(s)	418
RseI	CAYNNNNRTG	3 cut(s)	566, 701, 805
SaqAI	TTAA	6 cut(s)	530, 719, 878, 906, 917, 992
SatI	GCNGC	4 cut(s)	144, 252, 311, 650
Sau3AI	GATC	1 cut(s)	595
Sau96I	GGNCC	4 cut(s)	372, 523, 768, 845
SchI	GAGTC	2 cut(s)	83, 197
SduI	GDGCHC	2 cut(s)	547, 985
SetI	ASST	9 cut(s)	420, 528, 633, 654, 754, 773, 840, 874, 991
SfaNI	GCATC	3 cut(s)	45, 322, 382
Sfr274I	CTCGAG	1 cut(s)	984
SinI	GGWCC	2 cut(s)	523, 768
SlaI	CTCGAG	1 cut(s)	984
SmiMI	CAYNNNNRTG	3 cut(s)	566, 701, 805
SmlI	CTYRAG	3 cut(s)	674, 905, 984
SmoI	CTYRAG	3 cut(s)	674, 905, 984
Sse9I	AATT	8 cut(s)	14, 86, 264, 405, 572, 714, 858, 993
SspMI	CTAG	3 cut(s)	402, 479, 839
TaqI	TCGA	2 cut(s)	39, 985
TasI	AATT	8 cut(s)	14, 86, 264, 405, 572, 714, 858, 993
TfiI	GAWTC	5 cut(s)	412, 428, 461, 927, 938
Tru1I	TTAA	6 cut(s)	530, 719, 878, 906, 917, 992
Tru9I	TTAA	6 cut(s)	530, 719, 878, 906, 917, 992
TseI	GCWGC	4 cut(s)	143, 251, 310, 649
TspDTI	ATGAA	5 cut(s)	45, 221, 225, 518, 896
TspGWI	ACGGA	2 cut(s)	200, 723
Vha464I	CTTAAG	1 cut(s)	905
VpaK11BI	GGWCC	2 cut(s)	523, 768
VspI	ATTAAT	1 cut(s)	878
XhoI	CTCGAG	1 cut(s)	984
XmnI	GAANNNNTTC	2 cut(s)	667, 942
XspI	CTAG	3 cut(s)	402, 479, 839
Zsp2I	ATGCAT	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.