Rh7DG319100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0012691
Physical Location & Seq
Forward (+)
37939078 .. 37940647
1570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG319100.1

Sequence Viewer

Length: 279 bp
ATGCAAGATGGAGTCGAGCAGGGTGGTCCTGACACTCTTGGTGTCGTGCGTGGCGGTAATGAATGCAGCGGCAGTAACATGGCTCTGGGTTTCTGGCAGAAGCTGGCTCAAGGTTTCTGGCCAAAGCATGCACCTAACGTGCTTGATTCGCCCGTCGCTCCAGCTTTAAGAAGAGGCATCCACTCTCGGGAAGCAACTCGCGTCGCTGGTCGTGGTGGCCACGGTCGTGGCATTGCCGGTATCCATATGATTTACTTGTACGTCACCTACCATCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.84

Weight (kDa)

9.51

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 201
AciI CCGC 2 cut(s) 54, 69
AcoI YGGCCR 2 cut(s) 119, 217
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 1 cut(s) 187
AleI CACNNNNGTG 1 cut(s) 225
AluBI AGCT 2 cut(s) 103, 164
AluI AGCT 2 cut(s) 103, 164
AlwNI CAGNNNCTG 1 cut(s) 103
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 2 cut(s) 119, 217
ApeKI GCWGC 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 256
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 26
BalI TGGCCA 2 cut(s) 121, 219
BbvI GCAGC 1 cut(s) 78
BccI CCATC 1 cut(s) 2
BciVI GTATCC 1 cut(s) 251
BfuI GTATCC 1 cut(s) 251
BisI GCNGC 2 cut(s) 67, 70
BlsI GCNGC 2 cut(s) 68, 71
Bme18I GGWCC 1 cut(s) 26
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 26
BmsI GCATC 1 cut(s) 186
BpmI CTGGAG 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 220
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse118I RCCGGY 1 cut(s) 236
Bse3DI GCAATG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 2 cut(s) 177, 271
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMI GCAATG 1 cut(s) 231
BseXI GCAGC 1 cut(s) 78
Bsh1236I CGCG 1 cut(s) 201
Bsh1285I CGRYCG 1 cut(s) 226
BshFI GGCC 2 cut(s) 121, 219
BsiEI CGRYCG 1 cut(s) 226
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 187
BsmI GAATGC 1 cut(s) 68
BsnI GGCC 2 cut(s) 121, 219
BsoBI CYCGRG 1 cut(s) 186
BspACI CCGC 2 cut(s) 54, 69
BspANI GGCC 2 cut(s) 121, 219
BspFNI CGCG 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 231
BsrFI RCCGGY 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 1 cut(s) 220
Bst4CI ACNGT 1 cut(s) 224
Bst6I CTCTTC 1 cut(s) 166
BstC8I GCNNGC 2 cut(s) 105, 129
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 2 cut(s) 177, 271
BstFNI CGCG 1 cut(s) 201
BstMCI CGRYCG 1 cut(s) 226
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstNSI RCATGY 1 cut(s) 131
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 78
BstXI CCANNNNNNTGG 1 cut(s) 227
BsuI GTATCC 1 cut(s) 251
BsuRI GGCC 2 cut(s) 121, 219
BtgI CCRYGG 1 cut(s) 220
BtsCI GGATG 2 cut(s) 177, 271
Cac8I GCNNGC 2 cut(s) 105, 129
CaiI CAGNNNCTG 1 cut(s) 103
Cfr10I RCCGGY 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 26
CseI GACGC 1 cut(s) 190
Csp6I GTAC 1 cut(s) 259
CviAII CATG 2 cut(s) 79, 128
CviJI RGCY 6 cut(s) 83, 103, 107, 121, 164, 219
CviKI_1 RGCY 6 cut(s) 83, 103, 107, 121, 164, 219
CviQI GTAC 1 cut(s) 259
EaeI YGGCCR 2 cut(s) 119, 217
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 26
Eco88I CYCGRG 1 cut(s) 186
FaeI CATG 2 cut(s) 82, 131
FaiI YATR 4 cut(s) 80, 129, 246, 248
FatI CATG 2 cut(s) 78, 127
FauNDI CATATG 1 cut(s) 246
Fnu4HI GCNGC 2 cut(s) 67, 70
FokI GGATG 2 cut(s) 164, 258
Fsp4HI GCNGC 2 cut(s) 67, 70
GluI GCNGC 2 cut(s) 67, 70
GsuI CTGGAG 1 cut(s) 144
HaeIII GGCC 2 cut(s) 121, 219
HapII CCGG 1 cut(s) 237
HgaI GACGC 1 cut(s) 190
Hin1II CATG 2 cut(s) 82, 131
HinfI GANTC 2 cut(s) 12, 146
HpaII CCGG 1 cut(s) 237
HphI GGTGA 1 cut(s) 256
Hpy188III TCNNGA 2 cut(s) 29, 188
Hpy99I CGWCG 2 cut(s) 158, 206
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4IV ACGT 2 cut(s) 138, 261
HpyCH4V TGCA 3 cut(s) 4, 66, 131
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpySE526I ACGT 2 cut(s) 138, 261
Hsp92II CATG 2 cut(s) 82, 131
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 9 cut(s) 5, 42, 71, 79, 89, 103, 174, 192, 250
Lsp1109I GCAGC 1 cut(s) 78
LweI GCATC 1 cut(s) 186
MaeII ACGT 2 cut(s) 138, 261
MaeIII GTNAC 2 cut(s) 74, 262
MboII GAAGA 1 cut(s) 183
MlsI TGGCCA 2 cut(s) 121, 219
MluNI TGGCCA 2 cut(s) 121, 219
MlyI GAGTC 1 cut(s) 21
MnlI CCTC 1 cut(s) 167
Mox20I TGGCCA 2 cut(s) 121, 219
MscI TGGCCA 2 cut(s) 121, 219
MseI TTAA 1 cut(s) 167
MslI CAYNNNNRTG 1 cut(s) 225
Msp20I TGGCCA 2 cut(s) 121, 219
MspA1I CMGCKG 1 cut(s) 69
MspI CCGG 1 cut(s) 237
Mva1269I GAATGC 1 cut(s) 68
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 148
NdeI CATATG 1 cut(s) 246
NlaIII CATG 2 cut(s) 82, 131
NmuCI GTSAC 1 cut(s) 262
NspI RCATGY 1 cut(s) 131
OliI CACNNNNGTG 1 cut(s) 225
PaeI GCATGC 1 cut(s) 131
PctI GAATGC 1 cut(s) 68
PfeI GAWTC 1 cut(s) 146
PkrI GCNGC 2 cut(s) 68, 71
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
PspPI GGNCC 1 cut(s) 26
PstNI CAGNNNCTG 1 cut(s) 103
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
RseI CAYNNNNRTG 1 cut(s) 225
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 2 cut(s) 67, 70
Sau96I GGNCC 1 cut(s) 26
SchI GAGTC 1 cut(s) 21
SetI ASST 7 cut(s) 105, 115, 136, 141, 166, 264, 269
SfaNI GCATC 1 cut(s) 186
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
SphI GCATGC 1 cut(s) 131
SsiI CCGC 2 cut(s) 54, 69
TaaI ACNGT 1 cut(s) 224
TaiI ACGT 2 cut(s) 141, 264
TaqI TCGA 1 cut(s) 15
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 1 cut(s) 66
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 75
TspGWI ACGGA 1 cut(s) 264
VpaK11BI GGWCC 1 cut(s) 26
XceI RCATGY 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.