RLG00000029781

Flowering time control protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002760
Physical Location & Seq
Reverse (-)
48961756 .. 48963933
2178 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029781

Sequence Viewer

Length: 468 bp
ATGAGGGTCTCGGTGGTTCACGCGGATAGTGATGCTATTGCTTTCCCCACATATCGAATGAGGGTCTCGGTGGTTCACGCGAAAAACCAGGACGACGACGACGACGACGACGACAACGTTGGAACTAGAGTTGTTAAGAGATGGCGCCGGCGGCAAGGCGGCGGAAACGAAGGAAGAGTGGCGTCTAACAATCTGTGGGTTGGGAACATCGGGAGGGACGTCACCGACTCGGATCTGTATGACCTGTTCTCCCAATACGGTGCGTTGGACGGCGTGACGTCATACTCGACGCGCAGCTACGCGTTCGTGTTGTTCAAACGCAAGGAGGAGGCTGGGGCGGCCAAGGAGGCTCTGCAAGGCACTCCTGTGCGAGGACAGCCCATTAAGATCGAATTTGCTCGACCGATGGCAGTAGCTAGCCTCTTGGTAACATCTGATAATCAATTTGCAACTGGACAAAACATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0000785 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0019219 GO:0019222 GO:0022414 GO:0031047 GO:0031048 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048229 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1 SPOC

Protein Analysis

156

Amino Acids

17.13

Weight (kDa)

6.1

Isoelectric Point (pI)

43.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 65 - 129 1.5e-14 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 222, 281
AccB1I GGYRCC 1 cut(s) 144
AccII CGCG 4 cut(s) 23, 80, 292, 302
AciI CCGC 5 cut(s) 23, 151, 159, 162, 338
AclI AACGTT 1 cut(s) 117
AclWI GGATC 1 cut(s) 240
AcoI YGGCCR 1 cut(s) 339
AcsI RAATTY 1 cut(s) 392
AcyI GRCGYC 4 cut(s) 145, 182, 219, 278
AfiI CCNNNNNNNGG 1 cut(s) 371
AflIII ACRYGT 1 cut(s) 300
AgsI TTSAA 1 cut(s) 316
AjnI CCWGG 1 cut(s) 87
AleI CACNNNNGTG 1 cut(s) 365
AluBI AGCT 2 cut(s) 297, 416
AluI AGCT 2 cut(s) 297, 416
Alw26I GTCTC 2 cut(s) 13, 70
AlwI GGATC 1 cut(s) 240
AoxI GGCC 1 cut(s) 339
ApeKI GCWGC 1 cut(s) 294
ApoI RAATTY 1 cut(s) 392
AspLEI GCGC 2 cut(s) 147, 294
AsuHPI GGTGA 1 cut(s) 214
AsuNHI GCTAGC 1 cut(s) 416
BanI GGYRCC 1 cut(s) 144
BbvI GCAGC 1 cut(s) 306
BccI CCATC 2 cut(s) 135, 400
BceAI ACGGC 1 cut(s) 286
BciT130I CCWGG 1 cut(s) 89
BcoDI GTCTC 2 cut(s) 13, 70
BfaI CTAG 2 cut(s) 126, 417
BfoI RGCGCY 1 cut(s) 148
BglI GCCNNNNNGGC 1 cut(s) 347
BisI GCNGC 4 cut(s) 152, 160, 295, 339
BlsI GCNGC 4 cut(s) 153, 161, 296, 340
Bme1390I CCNGG 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 1 cut(s) 22
BmtI GCTAGC 1 cut(s) 420
BsaHI GRCGYC 4 cut(s) 145, 182, 219, 278
BsaI GGTCTC 2 cut(s) 13, 70
BsaJI CCNNGG 1 cut(s) 342
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse118I RCCGGY 1 cut(s) 147
Bse1I ACTGG 1 cut(s) 457
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 342
BseLI CCNNNNNNNGG 1 cut(s) 371
BseNI ACTGG 1 cut(s) 457
BseRI GAGGAG 1 cut(s) 341
BseXI GCAGC 1 cut(s) 306
BseYI CCCAGC 1 cut(s) 332
Bsh1236I CGCG 4 cut(s) 23, 80, 292, 302
Bsh1285I CGRYCG 1 cut(s) 404
BshFI GGCC 1 cut(s) 341
BshNI GGYRCC 1 cut(s) 144
BsiEI CGRYCG 1 cut(s) 404
BsiSI CCGG 1 cut(s) 148
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 371
BsmAI GTCTC 2 cut(s) 13, 70
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 1 cut(s) 341
Bso31I GGTCTC 2 cut(s) 13, 70
Bsp143I GATC 2 cut(s) 232, 387
BspACI CCGC 5 cut(s) 23, 151, 159, 162, 338
BspANI GGCC 1 cut(s) 341
BspFNI CGCG 4 cut(s) 23, 80, 292, 302
BspLI GGNNCC 1 cut(s) 146
BspOI GCTAGC 1 cut(s) 420
BspPI GGATC 1 cut(s) 240
BspT107I GGYRCC 1 cut(s) 144
BspTNI GGTCTC 2 cut(s) 13, 70
BsrFI RCCGGY 1 cut(s) 147
BsrI ACTGG 1 cut(s) 457
BssAI RCCGGY 1 cut(s) 147
BssECI CCNNGG 1 cut(s) 342
BssMI GATC 2 cut(s) 232, 387
BssNI GRCGYC 4 cut(s) 145, 182, 219, 278
BssT1I CCWWGG 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 260
Bst6I CTCTTC 1 cut(s) 169
BstACI GRCGYC 4 cut(s) 145, 182, 219, 278
BstC8I GCNNGC 2 cut(s) 149, 418
BstENI CCTNNNNNAGG 1 cut(s) 369
BstFNI CGCG 4 cut(s) 23, 80, 292, 302
BstH2I RGCGCY 1 cut(s) 148
BstHHI GCGC 2 cut(s) 147, 294
BstKTI GATC 2 cut(s) 235, 390
BstMAI GTCTC 2 cut(s) 13, 70
BstMBI GATC 2 cut(s) 232, 387
BstMCI CGRYCG 1 cut(s) 404
BstMWI GCNNNNNNNGC 4 cut(s) 151, 338, 347, 376
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BstUI CGCG 4 cut(s) 23, 80, 292, 302
BstV1I GCAGC 1 cut(s) 306
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 1 cut(s) 341
Cac8I GCNNGC 2 cut(s) 149, 418
CfoI GCGC 2 cut(s) 147, 294
Cfr10I RCCGGY 1 cut(s) 147
CseI GACGC 2 cut(s) 171, 298
CviJI RGCY 7 cut(s) 297, 332, 341, 350, 379, 416, 420
CviKI_1 RGCY 7 cut(s) 297, 332, 341, 350, 379, 416, 420
DinI GGCGCC 1 cut(s) 146
DpnI GATC 2 cut(s) 234, 389
DpnII GATC 2 cut(s) 232, 387
EaeI YGGCCR 1 cut(s) 339
Eam1104I CTCTTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 169
EciI GGCGGA 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 342
Eco31I GGTCTC 2 cut(s) 13, 70
EcoNI CCTNNNNNAGG 1 cut(s) 369
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 342
EgeI GGCGCC 1 cut(s) 146
EheI GGCGCC 1 cut(s) 146
ErhI CCWWGG 1 cut(s) 342
FaiI YATR 3 cut(s) 52, 240, 283
FaqI GGGAC 1 cut(s) 230
Fnu4HI GCNGC 4 cut(s) 152, 160, 295, 339
Fsp4HI GCNGC 4 cut(s) 152, 160, 295, 339
FspBI CTAG 2 cut(s) 126, 417
GlaI GCGC 2 cut(s) 146, 293
GluI GCNGC 4 cut(s) 152, 160, 295, 339
GsaI CCCAGC 1 cut(s) 336
HaeII RGCGCY 1 cut(s) 148
HaeIII GGCC 1 cut(s) 341
HapII CCGG 1 cut(s) 148
HgaI GACGC 2 cut(s) 171, 298
HhaI GCGC 2 cut(s) 147, 294
Hin1I GRCGYC 4 cut(s) 145, 182, 219, 278
Hin6I GCGC 2 cut(s) 145, 292
HinP1I GCGC 2 cut(s) 145, 292
HinfI GANTC 1 cut(s) 227
HpaII CCGG 1 cut(s) 148
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 2 cut(s) 19, 76
Hpy188I TCNGA 2 cut(s) 232, 436
Hpy188III TCNNGA 1 cut(s) 211
Hpy8I GTNNAC 2 cut(s) 19, 76
Hpy99I CGWCG 7 cut(s) 98, 101, 104, 107, 110, 113, 292
HpyAV CCTTC 1 cut(s) 164
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4IV ACGT 3 cut(s) 117, 219, 278
HpyCH4V TGCA 2 cut(s) 355, 449
HpyF10VI GCNNNNNNNGC 4 cut(s) 151, 338, 347, 376
HpySE526I ACGT 3 cut(s) 117, 219, 278
Hsp92I GRCGYC 4 cut(s) 145, 182, 219, 278
HspAI GCGC 2 cut(s) 145, 292
KasI GGCGCC 1 cut(s) 144
KroI GCCGGC 1 cut(s) 147
KroNI GCCGGC 1 cut(s) 149
Kzo9I GATC 2 cut(s) 232, 387
LpnPI CCDG 7 cut(s) 74, 101, 161, 257, 318, 378, 438
Lsp1109I GCAGC 1 cut(s) 306
LweI GCATC 1 cut(s) 22
MaeI CTAG 2 cut(s) 126, 417
MaeII ACGT 3 cut(s) 117, 219, 278
MaeIII GTNAC 3 cut(s) 220, 274, 427
MalI GATC 2 cut(s) 234, 389
MboI GATC 2 cut(s) 232, 387
MboII GAAGA 1 cut(s) 186
MflI RGATCY 1 cut(s) 232
MluCI AATT 2 cut(s) 392, 443
MluI ACGCGT 1 cut(s) 300
Mly113I GGCGCC 1 cut(s) 145
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 2 cut(s) 100, 246
MnlI CCTC 7 cut(s) 54, 207, 319, 322, 340, 365, 431
MreI CGCCGGCG 1 cut(s) 147
MroNI GCCGGC 1 cut(s) 147
MseI TTAA 3 cut(s) 135, 384, 466
MslI CAYNNNNRTG 1 cut(s) 365
MspI CCGG 1 cut(s) 148
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
MvnI CGCG 4 cut(s) 23, 80, 292, 302
MwoI GCNNNNNNNGC 4 cut(s) 151, 338, 347, 376
NaeI GCCGGC 1 cut(s) 149
NarI GGCGCC 1 cut(s) 145
NdeII GATC 2 cut(s) 232, 387
NgoMIV GCCGGC 1 cut(s) 147
NheI GCTAGC 1 cut(s) 416
NlaIV GGNNCC 1 cut(s) 146
NmuCI GTSAC 2 cut(s) 220, 274
OliI CACNNNNGTG 1 cut(s) 365
PcsI WCGNNNNNNNCGW 7 cut(s) 99, 102, 105, 108, 114, 216, 284
PdiI GCCGGC 1 cut(s) 149
PkrI GCNGC 4 cut(s) 153, 161, 296, 340
PleI GAGTC 1 cut(s) 221
PluTI GGCGCC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 221
Psp1406I AACGTT 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 87
PspFI CCCAGC 1 cut(s) 332
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 146
PsrI GAACNNNNNNTAC 2 cut(s) 230, 262
PsuI RGATCY 1 cut(s) 232
RseI CAYNNNNRTG 1 cut(s) 365
SaqAI TTAA 3 cut(s) 135, 384, 466
SatI GCNGC 4 cut(s) 152, 160, 295, 339
Sau3AI GATC 2 cut(s) 232, 387
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 89
SetI ASST 6 cut(s) 120, 222, 246, 281, 299, 418
SfaNI GCATC 1 cut(s) 22
SfoI GGCGCC 1 cut(s) 146
SgrAI CRCCGGYG 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 365
Sse9I AATT 2 cut(s) 392, 443
SsiI CCGC 5 cut(s) 23, 151, 159, 162, 338
SspDI GGCGCC 1 cut(s) 144
SspMI CTAG 2 cut(s) 126, 417
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 1 cut(s) 260
TaiI ACGT 3 cut(s) 120, 222, 281
TaqI TCGA 4 cut(s) 55, 287, 390, 400
TaqII GACCGA 1 cut(s) 418
TasI AATT 2 cut(s) 392, 443
TauI GCSGC 3 cut(s) 154, 162, 341
Tru1I TTAA 3 cut(s) 135, 384, 466
Tru9I TTAA 3 cut(s) 135, 384, 466
TseFI GTSAC 2 cut(s) 220, 274
TseI GCWGC 1 cut(s) 294
Tsp45I GTSAC 2 cut(s) 220, 274
XagI CCTNNNNNAGG 1 cut(s) 369
XapI RAATTY 1 cut(s) 392
XspI CTAG 2 cut(s) 126, 417
ZraI GACGTC 2 cut(s) 220, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.