Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000236.1

Orthogroup ID

OG0002760

Physical Location & Seq

Genomic Coordinates Forward (+)

27329 .. 29201

Gene Structure 1873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000236.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

atgccccacaatgccatgattttgtttggtgagattgagaagattaaaagttttccttcaaggcactactcatttgtcaaattcaggagtgtagacgaagcttggcgtgccaaggagggtttgcaaggcaggcttttcaaagatcctcggatcacaattatgttttcaactagtgatctgccaccagctagcccataccaaccgggaggaggcgaatggtctactcctagacttgatatgcaactatttaatggacattcaatgagcaacttagggcctggagctctaccacaaagtccaagtggtaattttcttagaccaaatgacgttctaatgaggcctttaggtcctctgcctcctggtagatttgatgatctgctttattatcaagatggcagttccaggaagagccaccttagtccacctggtgtcaggggcatagttggaggtcctaggcctcctgatgatgattacatctggcgtggcattattgccaagggtggaacagccatttgtcgtgctcgttgtgtccttgtaggcaaagggataagaattgagattgtagatgaatttgcttcctacactgaattccttcattatctaggtgcgaaaaaccgtgctggtgttgcaaagtttgatgatgggatgacattgtttttagtacctccttcagacttcttgaagactgttttgaaagttgctggccctgaacgtctgtatggtgtggttctcaagtttccacaacaagttcctagtgctgcttccattcagcaaccatcacatctacccattgaatcttcacaatatatagataaacagcagattcctcctatacatgctgagtataccattccatcgaaggatgaacatgtatcacaggctggagttcctttattaacacctgaacttattggctctctggcgactttactgcctggaaatgcacagccgtctttgccagaaagttcgaagctatcggcatgggaaacaagatcagcagttaggccctcatttcctggatggaaacaagatcaacaaatttctgatctaagaacagagtcttccacagtaccagcctacttatccatccggtacaaacacatcaagttaccactctggtccactggtgcttggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0000785 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0019219 GO:0019222 GO:0022414 GO:0031047 GO:0031048 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048229 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 SPOC

Protein Analysis

378

Amino Acids

41.75

Weight (kDa)

9.15

Isoelectric Point (pI)

53.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43410 AT2G43410 AT2G43410 AT2G43410 AT2G43410 AT2G43410
fragaria_vesca	FvH4_7g04880 FvH4_7g04880 FvH4_7g04880
malus_domestica	MD04G1045000.v1.1 MD13G1271200.v1.1
prunus_persica	Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1
pyrus_communis	pycom04g03870 pycom13g27540
rosa_chinensis	RchiOBHm_Chr1g0330861
rosa_laevigata	RLG00000029768 RLG00000029781
rosa_multiflora	Rmu_sc0000236.1_g000011 Rmu_sc0000236.1_g000038 Rmu_sc0002899.1_g000006 Rmu_sc0005689.1_g000004 Rmu_sc0005689.1_g000022
rosa_roxburghii	Rroxscaffold_4G00319690 Rroxscaffold_4G00326970 Rroxscaffold_5G00351180
rosa_rugosa	Rorug01G0090800.1 Rorug01G0090900
rosa_samantha	Rh1AG112500 Rh1BG086500 Rh1CG109500 Rh1CG109600 Rh1DG117900
rosa_wichuraiana	Rw1G009100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	93, 221, 845
AclWI	GGATC	2 cut(s)	137, 158
AcsI	RAATTY	4 cut(s)	80, 569, 587, 1038
AcuI	CTGAAG	1 cut(s)	654
AdeI	CACNNNGTG	1 cut(s)	428
AfaI	GTAC	3 cut(s)	663, 1071, 1094
AfiI	CCNNNNNNNGG	1 cut(s)	209
AflIII	ACRYGT	1 cut(s)	868
AgsI	TTSAA	7 cut(s)	60, 139, 168, 261, 682, 694, 794
AhlI	ACTAGT	1 cut(s)	170
AjnI	CCWGG	6 cut(s)	277, 358, 401, 424, 934, 1015
AluBI	AGCT	4 cut(s)	101, 188, 284, 973
AluI	AGCT	4 cut(s)	101, 188, 284, 973
Alw21I	GWGCWC	2 cut(s)	286, 523
AlwI	GGATC	2 cut(s)	137, 158
AoxI	GGCC	5 cut(s)	275, 338, 455, 703, 1004
ApeKI	GCWGC	1 cut(s)	758
ApoI	RAATTY	4 cut(s)	80, 569, 587, 1038
Asp700I	GAANNNNTTC	1 cut(s)	591
AspA2I	CCTAGG	1 cut(s)	452
AspS9I	GGNCC	6 cut(s)	275, 347, 449, 704, 1005, 1119
AsuC2I	CCSGG	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	41
AsuII	TTCGAA	1 cut(s)	968
AsuNHI	GCTAGC	1 cut(s)	188
AvaII	GGWCC	3 cut(s)	347, 449, 1119
AvrII	CCTAGG	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	286
BbsI	GAAGAC	2 cut(s)	689, 1053
Bbv12I	GWGCWC	2 cut(s)	286, 523
BbvI	GCAGC	1 cut(s)	745
BccI	CCATC	6 cut(s)	386, 635, 784, 862, 1014, 1094
BceAI	ACGGC	1 cut(s)	934
BcgI	CGANNNNNNTGC	2 cut(s)	913, 947
BciT130I	CCWGG	6 cut(s)	279, 360, 403, 426, 936, 1017
BcnI	CCSGG	1 cut(s)	204
BcuI	ACTAGT	1 cut(s)	170
BfaI	CTAG	6 cut(s)	171, 189, 228, 453, 602, 753
BisI	GCNGC	1 cut(s)	759
BlnI	CCTAGG	1 cut(s)	452
BlsI	GCNGC	1 cut(s)	760
Bme1390I	CCNGG	7 cut(s)	204, 279, 360, 403, 426, 936, 1017
Bme18I	GGWCC	3 cut(s)	347, 449, 1119
BmgT120I	GGNCC	6 cut(s)	275, 347, 449, 704, 1005, 1119
BmrFI	CCNGG	7 cut(s)	204, 279, 360, 403, 426, 936, 1017
BmtI	GCTAGC	1 cut(s)	192
BpiI	GAAGAC	2 cut(s)	689, 1053
BpmI	CTGGAG	2 cut(s)	300, 903
Bpu14I	TTCGAA	1 cut(s)	968
BpuEI	CTTGAG	1 cut(s)	716
BpuMI	CCSGG	1 cut(s)	204
BsaJI	CCNNGG	4 cut(s)	111, 146, 452, 495
BsaWI	WCCGGW	1 cut(s)	1089
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	1129
BseBI	CCWGG	6 cut(s)	279, 360, 403, 426, 936, 1017
BseDI	CCNNGG	4 cut(s)	111, 146, 452, 495
BseGI	GGATG	4 cut(s)	651, 868, 1025, 1086
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMII	CTCAG	1 cut(s)	831
BseNI	ACTGG	1 cut(s)	1129
BseRI	GAGGAG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	745
BshFI	GGCC	5 cut(s)	277, 340, 457, 705, 1006
BsiHKAI	GWGCWC	2 cut(s)	286, 523
BsiSI	CCGG	2 cut(s)	203, 1090
BslI	CCNNNNNNNGG	1 cut(s)	209
BsnI	GGCC	5 cut(s)	277, 340, 457, 705, 1006
Bsp119I	TTCGAA	1 cut(s)	968
Bsp1286I	GDGCHC	2 cut(s)	286, 523
Bsp143I	GATC	7 cut(s)	142, 150, 175, 373, 992, 1030, 1045
BspANI	GGCC	5 cut(s)	277, 340, 457, 705, 1006
BspCNI	CTCAG	1 cut(s)	832
BspOI	GCTAGC	1 cut(s)	192
BspPI	GGATC	2 cut(s)	137, 158
BspQI	GCTCTTC	1 cut(s)	401
BspT104I	TTCGAA	1 cut(s)	968
BsrI	ACTGG	1 cut(s)	1129
BssECI	CCNNGG	4 cut(s)	111, 146, 452, 495
BssMI	GATC	7 cut(s)	142, 150, 175, 373, 992, 1030, 1045
BssNAI	GTATAC	1 cut(s)	846
BssT1I	CCWWGG	3 cut(s)	111, 452, 495
Bst1107I	GTATAC	1 cut(s)	846
Bst2UI	CCWGG	6 cut(s)	279, 360, 403, 426, 936, 1017
Bst4CI	ACNGT	3 cut(s)	617, 688, 1069
Bst6I	CTCTTC	1 cut(s)	401
BstBI	TTCGAA	1 cut(s)	968
BstC8I	GCNNGC	4 cut(s)	108, 131, 190, 703
BstDEI	CTNAG	5 cut(s)	271, 314, 416, 840, 1049
BstF5I	GGATG	4 cut(s)	651, 868, 1025, 1086
BstKTI	GATC	7 cut(s)	145, 153, 178, 376, 995, 1033, 1048
BstMBI	GATC	7 cut(s)	142, 150, 175, 373, 992, 1030, 1045
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 130, 626, 955
BstNI	CCWGG	6 cut(s)	279, 360, 403, 426, 936, 1017
BstNSI	RCATGY	2 cut(s)	839, 872
BstSCI	CCNGG	7 cut(s)	202, 277, 358, 401, 424, 934, 1015
BstV1I	GCAGC	1 cut(s)	745
BstV2I	GAAGAC	2 cut(s)	689, 1053
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BstZ17I	GTATAC	1 cut(s)	846
BsuRI	GGCC	5 cut(s)	277, 340, 457, 705, 1006
BtsCI	GGATG	4 cut(s)	651, 868, 1025, 1086
BtsIMutI	CAGTG	2 cut(s)	582, 1122
Cac8I	GCNNGC	4 cut(s)	108, 131, 190, 703
Cfr13I	GGNCC	6 cut(s)	275, 347, 449, 704, 1005, 1119
CsiI	ACCWGGT	1 cut(s)	424
Csp6I	GTAC	3 cut(s)	662, 1070, 1093
CviAII	CATG	4 cut(s)	16, 836, 869, 981
CviQI	GTAC	3 cut(s)	662, 1070, 1093
DdeI	CTNAG	5 cut(s)	271, 314, 416, 840, 1049
DpnI	GATC	7 cut(s)	144, 152, 177, 375, 994, 1032, 1047
DpnII	GATC	7 cut(s)	142, 150, 175, 373, 992, 1030, 1045
DraIII	CACNNNGTG	1 cut(s)	428
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
Ecl136II	GAGCTC	1 cut(s)	284
Eco130I	CCWWGG	3 cut(s)	111, 452, 495
Eco147I	AGGCCT	2 cut(s)	340, 457
Eco24I	GRGCYC	1 cut(s)	286
Eco47I	GGWCC	3 cut(s)	347, 449, 1119
Eco53kI	GAGCTC	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	654
EcoICRI	GAGCTC	1 cut(s)	284
EcoO109I	RGGNCCY	4 cut(s)	275, 347, 449, 1005
EcoRI	GAATTC	1 cut(s)	587
EcoRII	CCWGG	6 cut(s)	277, 358, 401, 424, 934, 1015
EcoT14I	CCWWGG	3 cut(s)	111, 452, 495
EcoT38I	GRGCYC	1 cut(s)	286
ErhI	CCWWGG	3 cut(s)	111, 452, 495
FaeI	CATG	4 cut(s)	19, 839, 872, 984
FalI	AAGNNNNNCTT	4 cut(s)	40, 72, 117, 149
FatI	CATG	4 cut(s)	15, 835, 868, 980
FblI	GTMKAC	3 cut(s)	93, 221, 845
Fnu4HI	GCNGC	1 cut(s)	759
FokI	GGATG	4 cut(s)	658, 875, 1032, 1073
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	1 cut(s)	759
FspBI	CTAG	6 cut(s)	171, 189, 228, 453, 602, 753
GluI	GCNGC	1 cut(s)	759
GsuI	CTGGAG	2 cut(s)	300, 903
HaeIII	GGCC	5 cut(s)	277, 340, 457, 705, 1006
HapII	CCGG	2 cut(s)	203, 1090
Hin1II	CATG	4 cut(s)	19, 839, 872, 984
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	3 cut(s)	794, 823, 1058
HpaII	CCGG	2 cut(s)	203, 1090
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	5 cut(s)	94, 222, 422, 846, 1122
Hpy188I	TCNGA	3 cut(s)	150, 673, 1045
Hpy188III	TCNNGA	4 cut(s)	85, 389, 461, 679
Hpy8I	GTNNAC	5 cut(s)	94, 222, 422, 846, 1122
HpyAV	CCTTC	4 cut(s)	66, 602, 678, 853
HpyCH4III	ACNGT	3 cut(s)	617, 688, 1069
HpyCH4IV	ACGT	2 cut(s)	327, 712
HpyCH4V	TGCA	4 cut(s)	124, 241, 629, 944
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 130, 626, 955
HpyF3I	CTNAG	5 cut(s)	271, 314, 416, 840, 1049
HpySE526I	ACGT	2 cut(s)	327, 712
Hsp92II	CATG	4 cut(s)	19, 839, 872, 984
Kzo9I	GATC	7 cut(s)	142, 150, 175, 373, 992, 1030, 1045
LguI	GCTCTTC	1 cut(s)	401
LmnI	GCTCC	1 cut(s)	281
Lsp1109I	GCAGC	1 cut(s)	745
MabI	ACCWGGT	1 cut(s)	424
MaeI	CTAG	6 cut(s)	171, 189, 228, 453, 602, 753
MaeII	ACGT	2 cut(s)	327, 712
MaeIII	GTNAC	1 cut(s)	1107
MalI	GATC	7 cut(s)	144, 152, 177, 375, 994, 1032, 1047
MboI	GATC	7 cut(s)	142, 150, 175, 373, 992, 1030, 1045
MboII	GAAGA	5 cut(s)	52, 418, 694, 789, 1053
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	2 cut(s)	286, 523
MluCI	AATT	7 cut(s)	80, 156, 307, 552, 569, 587, 1038
MlyI	GAGTC	1 cut(s)	1067
MmeI	TCCRAC	1 cut(s)	424
MroXI	GAANNNNTTC	1 cut(s)	591
MseI	TTAA	3 cut(s)	45, 249, 896
MslI	CAYNNNNRTG	1 cut(s)	158
MspI	CCGG	2 cut(s)	203, 1090
MspR9I	CCNGG	7 cut(s)	204, 279, 360, 403, 426, 936, 1017
MvaI	CCWGG	6 cut(s)	279, 360, 403, 426, 936, 1017
MwoI	GCNNNNNNNGC	4 cut(s)	107, 130, 626, 955
NciI	CCSGG	1 cut(s)	204
NdeII	GATC	7 cut(s)	142, 150, 175, 373, 992, 1030, 1045
NheI	GCTAGC	1 cut(s)	188
NlaIII	CATG	4 cut(s)	19, 839, 872, 984
NspI	RCATGY	2 cut(s)	839, 872
NspV	TTCGAA	1 cut(s)	968
PceI	AGGCCT	2 cut(s)	340, 457
PciI	ACATGT	1 cut(s)	868
PciSI	GCTCTTC	1 cut(s)	401
PdmI	GAANNNNTTC	1 cut(s)	591
PfeI	GAWTC	2 cut(s)	794, 823
PfoI	TCCNGGA	2 cut(s)	401, 1015
PkrI	GCNGC	1 cut(s)	760
PleI	GAGTC	1 cut(s)	1066
PpsI	GAGTC	1 cut(s)	1066
PpuMI	RGGWCCY	2 cut(s)	347, 449
PscI	ACATGT	1 cut(s)	868
Psp124BI	GAGCTC	1 cut(s)	286
Psp5II	RGGWCCY	2 cut(s)	347, 449
Psp6I	CCWGG	6 cut(s)	277, 358, 401, 424, 934, 1015
PspGI	CCWGG	6 cut(s)	277, 358, 401, 424, 934, 1015
PspPI	GGNCC	6 cut(s)	275, 347, 449, 704, 1005, 1119
PspPPI	RGGWCCY	2 cut(s)	347, 449
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	3 cut(s)	663, 1071, 1094
RsaNI	GTAC	3 cut(s)	662, 1070, 1093
RseI	CAYNNNNRTG	1 cut(s)	158
SacI	GAGCTC	1 cut(s)	286
SapI	GCTCTTC	1 cut(s)	401
SaqAI	TTAA	3 cut(s)	45, 249, 896
SatI	GCNGC	1 cut(s)	759
Sau3AI	GATC	7 cut(s)	142, 150, 175, 373, 992, 1030, 1045
Sau96I	GGNCC	6 cut(s)	275, 347, 449, 704, 1005, 1119
SchI	GAGTC	1 cut(s)	1067
ScrFI	CCNGG	7 cut(s)	204, 279, 360, 403, 426, 936, 1017
SduI	GDGCHC	2 cut(s)	286, 523
SexAI	ACCWGGT	1 cut(s)	424
SfuI	TTCGAA	1 cut(s)	968
SinI	GGWCC	3 cut(s)	347, 449, 1119
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	731
SmoI	CTYRAG	1 cut(s)	731
SpeI	ACTAGT	1 cut(s)	170
Sse9I	AATT	7 cut(s)	80, 156, 307, 552, 569, 587, 1038
SseBI	AGGCCT	2 cut(s)	340, 457
SspMI	CTAG	6 cut(s)	171, 189, 228, 453, 602, 753
SstI	GAGCTC	1 cut(s)	286
StuI	AGGCCT	2 cut(s)	340, 457
StyD4I	CCNGG	7 cut(s)	202, 277, 358, 401, 424, 934, 1015
StyI	CCWWGG	3 cut(s)	111, 452, 495
TaaI	ACNGT	3 cut(s)	617, 688, 1069
TaiI	ACGT	2 cut(s)	330, 715
TaqI	TCGA	2 cut(s)	857, 968
TasI	AATT	7 cut(s)	80, 156, 307, 552, 569, 587, 1038
TfiI	GAWTC	2 cut(s)	794, 823
Tru1I	TTAA	3 cut(s)	45, 249, 896
Tru9I	TTAA	3 cut(s)	45, 249, 896
TscAI	CASTG	2 cut(s)	589, 1129
TseI	GCWGC	1 cut(s)	758
TspDTI	ATGAA	3 cut(s)	582, 584, 879
TspRI	CASTG	2 cut(s)	589, 1129
VpaK11BI	GGWCC	3 cut(s)	347, 449, 1119
XapI	RAATTY	4 cut(s)	80, 569, 587, 1038
XceI	RCATGY	2 cut(s)	839, 872
XmaJI	CCTAGG	1 cut(s)	452
XmiI	GTMKAC	3 cut(s)	93, 221, 845
XmnI	GAANNNNTTC	1 cut(s)	591
XspI	CTAG	6 cut(s)	171, 189, 228, 453, 602, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.