Rroxscaffold_5G00351180

Flowering time control protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002760
Physical Location & Seq
Reverse (-)
27173622 .. 27174395
774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00351180.1

Sequence Viewer

Length: 372 bp
ATGTGGACTTTCTTCGATCACAACCTTCGACCTCAAGAAGGAACAGTTGCCCGACTACCGAGATGGACAGTTTCTTGGCAGAGGGCCGGAGCTCTACCACAAAGTCCAAGTGGTAACTTTCTTGGACCAAATGACGTTCCAATGAGGCCTTTAGGTCCTCTCGCCTCCGGTAGATTTGATGATCTGCTTTATTATCAAGATGGCAGTTCCAAGAAGAGCCGCCTTAGTCCACCCGGTGTCGGGGGCATAGTTGGAGGTCCTAGGCCTCCCGATGATGATTACATCTGGCGTGGCATTATTGCCAAGGGTGGAACACCCATTTGTCGTGCTCGTTGTGTCCCCGTAGGCAAAGGGATAAGAATTGAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0000785 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0019219 GO:0019222 GO:0022414 GO:0031047 GO:0031048 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048229 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1 SPOC

Protein Analysis

123

Amino Acids

13.46

Weight (kDa)

9.91

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 220
AdeI CACNNNGTG 1 cut(s) 236
AfiI CCNNNNNNNGG 3 cut(s) 38, 239, 240
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
Alw21I GWGCWC 2 cut(s) 94, 331
AoxI GGCC 3 cut(s) 84, 146, 263
AspA2I CCTAGG 1 cut(s) 260
AspS9I GGNCC 4 cut(s) 84, 125, 155, 257
AsuC2I CCSGG 1 cut(s) 234
AvaII GGWCC 3 cut(s) 125, 155, 257
AvrII CCTAGG 1 cut(s) 260
BanII GRGCYC 1 cut(s) 94
Bbv12I GWGCWC 2 cut(s) 94, 331
BccI CCATC 2 cut(s) 57, 194
BcnI CCSGG 1 cut(s) 234
BfaI CTAG 1 cut(s) 261
BisI GCNGC 1 cut(s) 220
BlnI CCTAGG 1 cut(s) 260
BlsI GCNGC 1 cut(s) 221
Bme1390I CCNGG 1 cut(s) 234
Bme18I GGWCC 3 cut(s) 125, 155, 257
BmgT120I GGNCC 4 cut(s) 84, 125, 155, 257
BmrFI CCNGG 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 18
BpuMI CCSGG 1 cut(s) 234
BsaJI CCNNGG 2 cut(s) 260, 303
BsaWI WCCGGW 1 cut(s) 167
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 239, 240
BseDI CCNNGG 2 cut(s) 260, 303
BseLI CCNNNNNNNGG 3 cut(s) 38, 239, 240
BshFI GGCC 3 cut(s) 86, 148, 265
BsiHKAI GWGCWC 2 cut(s) 94, 331
BsiSI CCGG 3 cut(s) 87, 168, 234
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 3 cut(s) 38, 239, 240
BsmFI GGGAC 1 cut(s) 323
BsnI GGCC 3 cut(s) 86, 148, 265
Bsp1286I GDGCHC 2 cut(s) 94, 331
Bsp143I GATC 2 cut(s) 16, 181
BspACI CCGC 1 cut(s) 220
BspANI GGCC 3 cut(s) 86, 148, 265
BspQI GCTCTTC 1 cut(s) 209
BssECI CCNNGG 2 cut(s) 260, 303
BssMI GATC 2 cut(s) 16, 181
BssT1I CCWWGG 2 cut(s) 260, 303
Bst4CI ACNGT 2 cut(s) 46, 70
Bst6I CTCTTC 1 cut(s) 209
BstDEI CTNAG 1 cut(s) 224
BstENI CCTNNNNNAGG 1 cut(s) 36
BstKTI GATC 2 cut(s) 19, 184
BstMBI GATC 2 cut(s) 16, 181
BstSCI CCNGG 1 cut(s) 232
BsuRI GGCC 3 cut(s) 86, 148, 265
Cfr13I GGNCC 4 cut(s) 84, 125, 155, 257
CviJI RGCY 5 cut(s) 86, 92, 148, 219, 265
CviKI_1 RGCY 5 cut(s) 86, 92, 148, 219, 265
DdeI CTNAG 1 cut(s) 224
DpnI GATC 2 cut(s) 18, 183
DpnII GATC 2 cut(s) 16, 181
DraIII CACNNNGTG 1 cut(s) 236
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
Ecl136II GAGCTC 1 cut(s) 92
Eco130I CCWWGG 2 cut(s) 260, 303
Eco147I AGGCCT 2 cut(s) 148, 265
Eco24I GRGCYC 1 cut(s) 94
Eco47I GGWCC 3 cut(s) 125, 155, 257
Eco53kI GAGCTC 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 92
EcoNI CCTNNNNNAGG 1 cut(s) 36
EcoO109I RGGNCCY 2 cut(s) 155, 257
EcoT14I CCWWGG 2 cut(s) 260, 303
EcoT38I GRGCYC 1 cut(s) 94
ErhI CCWWGG 2 cut(s) 260, 303
FaiI YATR 1 cut(s) 248
FaqI GGGAC 1 cut(s) 323
Fnu4HI GCNGC 1 cut(s) 220
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 220
FspBI CTAG 1 cut(s) 261
GluI GCNGC 1 cut(s) 220
HaeIII GGCC 3 cut(s) 86, 148, 265
HapII CCGG 3 cut(s) 87, 168, 234
HpaII CCGG 3 cut(s) 87, 168, 234
Hpy166II GTNNAC 2 cut(s) 6, 230
Hpy188III TCNNGA 3 cut(s) 35, 197, 269
Hpy8I GTNNAC 2 cut(s) 6, 230
HpyAV CCTTC 2 cut(s) 32, 35
HpyCH4III ACNGT 2 cut(s) 46, 70
HpyCH4IV ACGT 1 cut(s) 135
HpyF3I CTNAG 1 cut(s) 224
HpySE526I ACGT 1 cut(s) 135
Kzo9I GATC 2 cut(s) 16, 181
LguI GCTCTTC 1 cut(s) 209
LmnI GCTCC 1 cut(s) 89
LpnPI CCDG 4 cut(s) 100, 181, 247, 271
MaeI CTAG 1 cut(s) 261
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 113
MalI GATC 2 cut(s) 18, 183
MboI GATC 2 cut(s) 16, 181
MboII GAAGA 2 cut(s) 4, 226
MhlI GDGCHC 2 cut(s) 94, 331
MluCI AATT 1 cut(s) 360
MmeI TCCRAC 1 cut(s) 232
MnlI CCTC 7 cut(s) 42, 75, 138, 168, 175, 248, 276
MspI CCGG 3 cut(s) 87, 168, 234
MspR9I CCNGG 1 cut(s) 234
NciI CCSGG 1 cut(s) 234
NdeII GATC 2 cut(s) 16, 181
PceI AGGCCT 2 cut(s) 148, 265
PciSI GCTCTTC 1 cut(s) 209
PkrI GCNGC 1 cut(s) 221
PpuMI RGGWCCY 2 cut(s) 155, 257
Psp124BI GAGCTC 1 cut(s) 94
Psp5II RGGWCCY 2 cut(s) 155, 257
PspPI GGNCC 4 cut(s) 84, 125, 155, 257
PspPPI RGGWCCY 2 cut(s) 155, 257
SacI GAGCTC 1 cut(s) 94
SapI GCTCTTC 1 cut(s) 209
SatI GCNGC 1 cut(s) 220
Sau3AI GATC 2 cut(s) 16, 181
Sau96I GGNCC 4 cut(s) 84, 125, 155, 257
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 2 cut(s) 94, 331
SetI ASST 6 cut(s) 27, 34, 94, 138, 157, 259
SinI GGWCC 3 cut(s) 125, 155, 257
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
Sse9I AATT 1 cut(s) 360
SseBI AGGCCT 2 cut(s) 148, 265
SsiI CCGC 1 cut(s) 220
SspMI CTAG 1 cut(s) 261
SstI GAGCTC 1 cut(s) 94
StuI AGGCCT 2 cut(s) 148, 265
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 2 cut(s) 260, 303
TaaI ACNGT 2 cut(s) 46, 70
TaiI ACGT 1 cut(s) 138
TaqI TCGA 2 cut(s) 15, 28
TasI AATT 1 cut(s) 360
TauI GCSGC 1 cut(s) 222
VpaK11BI GGWCC 3 cut(s) 125, 155, 257
XagI CCTNNNNNAGG 1 cut(s) 36
XmaJI CCTAGG 1 cut(s) 260
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.