Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000236.1

Orthogroup ID

OG0002760

Physical Location & Seq

Genomic Coordinates Forward (+)

94189 .. 99659

Gene Structure 5471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000236.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atggaggctcacgctcgtgaaggaagatctggaaaggcgtggccacgcattgcccactcctttgaatcattaatggattacgaccttccaggaagggataaaggccttccattctttggacgaaagactatcctcgcaaaaccatccaagaagctatgggtaggtggaattagcccatctgtgtcgaaggaagaattagaagaagaatttctcaagtttggaaaattggaggacttcaggttccgtagagaccggaatcctgcatgtcttgaatattgtagattggaggatgcttctgaaacaatgagtaatatgaatgggaagcgattgggtggtgaccagatgcagatacatgtggattttcttcgatcacaaccttcaacctcaaaagggagcgtaaacgaagctcagcgtgccgaggagggtttgcaaggcaggattttcaatgatcctcgaatcacaattatgttttcaaccagtgatctgccaccagctggcccataccaaccgggaggaggcaaatggtctactcctagacctgatatgcatcaatttaatgaacattcaatgagtaacttcgggcctagagctctaccacaaagtccaagtggtaactttcttggaccaaatgacgttccaatgaggcctttaggtcctctgcctcctggtagatttgatgatctgctttattatcaagatggcagttccaagaagagccgccttagtccaccattattgccaagggtggaacacccatttgtcgtgctcgatgtgtccctgtatgcaaaaggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0000785 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0019219 GO:0019222 GO:0022414 GO:0031047 GO:0031048 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048229 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 SPOC

Protein Analysis

264

Amino Acids

29.59

Weight (kDa)

8.8

Isoelectric Point (pI)

55.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43410 AT2G43410 AT2G43410 AT2G43410 AT2G43410 AT2G43410
fragaria_vesca	FvH4_7g04880 FvH4_7g04880 FvH4_7g04880
malus_domestica	MD04G1045000.v1.1 MD13G1271200.v1.1
prunus_persica	Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1
pyrus_communis	pycom04g03870 pycom13g27540
rosa_chinensis	RchiOBHm_Chr1g0330861
rosa_laevigata	RLG00000029768 RLG00000029781
rosa_multiflora	Rmu_sc0000236.1_g000011 Rmu_sc0000236.1_g000038 Rmu_sc0002899.1_g000006 Rmu_sc0005689.1_g000004 Rmu_sc0005689.1_g000022
rosa_roxburghii	Rroxscaffold_4G00319690 Rroxscaffold_4G00326970 Rroxscaffold_5G00351180
rosa_rugosa	Rorug01G0090800.1 Rorug01G0090900
rosa_samantha	Rh1AG112500 Rh1BG086500 Rh1CG109500 Rh1CG109600 Rh1DG117900
rosa_wichuraiana	Rw1G009100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	116, 494
AccI	GTMKAC	1 cut(s)	527
AciI	CCGC	1 cut(s)	718
AclWI	GGATC	1 cut(s)	443
AcoI	YGGCCR	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	220
AfiI	CCNNNNNNNGG	4 cut(s)	116, 390, 494, 515
AflIII	ACRYGT	1 cut(s)	352
AgsI	TTSAA	6 cut(s)	65, 272, 381, 445, 474, 567
AjnI	CCWGG	2 cut(s)	88, 664
AleI	CACNNNNGTG	1 cut(s)	15
AloI	GAACNNNNNNTCC	2 cut(s)	224, 256
AluBI	AGCT	4 cut(s)	154, 407, 494, 590
AluI	AGCT	4 cut(s)	154, 407, 494, 590
Alw21I	GWGCWC	2 cut(s)	592, 768
Alw26I	GTCTC	1 cut(s)	243
AlwI	GGATC	1 cut(s)	443
AoxI	GGCC	5 cut(s)	41, 103, 496, 581, 644
ApoI	RAATTY	1 cut(s)	206
AseI	ATTAAT	1 cut(s)	71
Asp700I	GAANNNNTTC	1 cut(s)	207
AspS9I	GGNCC	4 cut(s)	497, 581, 623, 653
AsuC2I	CCSGG	1 cut(s)	510
AsuHPI	GGTGA	1 cut(s)	347
AvaII	GGWCC	2 cut(s)	623, 653
BalI	TGGCCA	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	592
BauI	CACGAG	1 cut(s)	15
Bbv12I	GWGCWC	2 cut(s)	592, 768
BccI	CCATC	3 cut(s)	151, 184, 692
BciT130I	CCWGG	2 cut(s)	90, 666
BcnI	CCSGG	1 cut(s)	510
BcoDI	GTCTC	1 cut(s)	243
BfaI	CTAG	2 cut(s)	534, 585
BglII	AGATCT	1 cut(s)	26
BisI	GCNGC	1 cut(s)	718
BlpI	GCTNAGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	719
Bme1390I	CCNGG	3 cut(s)	90, 510, 666
Bme18I	GGWCC	2 cut(s)	623, 653
BmgT120I	GGNCC	4 cut(s)	497, 581, 623, 653
BmiI	GGNNCC	1 cut(s)	242
BmrFI	CCNGG	3 cut(s)	90, 510, 666
BmsI	GCATC	3 cut(s)	280, 333, 556
Bpu1102I	GCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	510
BsaBI	GATNNNNATC	1 cut(s)	546
BsaI	GGTCTC	1 cut(s)	243
BsaJI	CCNNGG	2 cut(s)	417, 740
BsaWI	WCCGGW	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	4 cut(s)	116, 390, 494, 515
Bse1I	ACTGG	1 cut(s)	477
Bse3DI	GCAATG	1 cut(s)	48
Bse8I	GATNNNNATC	1 cut(s)	546
BseBI	CCWGG	2 cut(s)	90, 666
BseDI	CCNNGG	2 cut(s)	417, 740
BseGI	GGATG	2 cut(s)	143, 295
BseJI	GATNNNNATC	1 cut(s)	546
BseLI	CCNNNNNNNGG	4 cut(s)	116, 390, 494, 515
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	422
BseNI	ACTGG	1 cut(s)	477
BseRI	GAGGAG	2 cut(s)	434, 528
BshFI	GGCC	5 cut(s)	43, 105, 498, 583, 646
BsiHKAI	GWGCWC	2 cut(s)	592, 768
BsiSI	CCGG	2 cut(s)	253, 509
BslFI	GGGAC	1 cut(s)	760
BslI	CCNNNNNNNGG	4 cut(s)	116, 390, 494, 515
BsmAI	GTCTC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	760
BsnI	GGCC	5 cut(s)	43, 105, 498, 583, 646
Bso31I	GGTCTC	1 cut(s)	243
Bsp1286I	GDGCHC	2 cut(s)	592, 768
Bsp143I	GATC	5 cut(s)	26, 368, 448, 481, 679
Bsp1720I	GCTNAGC	1 cut(s)	408
BspACI	CCGC	1 cut(s)	718
BspANI	GGCC	5 cut(s)	43, 105, 498, 583, 646
BspCNI	CTCAG	1 cut(s)	421
BspLI	GGNNCC	1 cut(s)	242
BspPI	GGATC	1 cut(s)	443
BspQI	GCTCTTC	1 cut(s)	707
BspTNI	GGTCTC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	477
BssECI	CCNNGG	2 cut(s)	417, 740
BssMI	GATC	5 cut(s)	26, 368, 448, 481, 679
BssSI	CACGAG	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	740
Bst2BI	CACGAG	1 cut(s)	15
Bst2UI	CCWGG	2 cut(s)	90, 666
Bst6I	CTCTTC	1 cut(s)	707
BstC8I	GCNNGC	2 cut(s)	414, 496
BstDEI	CTNAG	2 cut(s)	408, 722
BstEII	GGTNACC	1 cut(s)	335
BstF5I	GGATG	2 cut(s)	143, 295
BstKTI	GATC	5 cut(s)	29, 371, 451, 484, 682
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	5 cut(s)	26, 368, 448, 481, 679
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstNI	CCWGG	2 cut(s)	90, 666
BstNSI	RCATGY	2 cut(s)	267, 356
BstPI	GGTNACC	1 cut(s)	335
BstSCI	CCNGG	3 cut(s)	88, 508, 664
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
BsuRI	GGCC	5 cut(s)	43, 105, 498, 583, 646
BtsCI	GGATG	2 cut(s)	143, 295
BtsIMutI	CAGTG	1 cut(s)	484
Cac8I	GCNNGC	2 cut(s)	414, 496
Cfr13I	GGNCC	4 cut(s)	497, 581, 623, 653
CspCI	CAANNNNNGTGG	2 cut(s)	717, 752
CviAII	CATG	2 cut(s)	264, 353
DdeI	CTNAG	2 cut(s)	408, 722
DpnI	GATC	5 cut(s)	28, 370, 450, 483, 681
DpnII	GATC	5 cut(s)	26, 368, 448, 481, 679
EaeI	YGGCCR	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	707
EarI	CTCTTC	1 cut(s)	707
Ecl136II	GAGCTC	1 cut(s)	590
Eco130I	CCWWGG	1 cut(s)	740
Eco147I	AGGCCT	2 cut(s)	105, 646
Eco24I	GRGCYC	1 cut(s)	592
Eco31I	GGTCTC	1 cut(s)	243
Eco47I	GGWCC	2 cut(s)	623, 653
Eco53kI	GAGCTC	1 cut(s)	590
Eco57I	CTGAAG	1 cut(s)	220
Eco91I	GGTNACC	1 cut(s)	335
EcoICRI	GAGCTC	1 cut(s)	590
EcoO109I	RGGNCCY	1 cut(s)	653
EcoO65I	GGTNACC	1 cut(s)	335
EcoRII	CCWGG	2 cut(s)	88, 664
EcoT14I	CCWWGG	1 cut(s)	740
EcoT22I	ATGCAT	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	592
ErhI	CCWWGG	1 cut(s)	740
FaeI	CATG	2 cut(s)	267, 356
FaiI	YATR	8 cut(s)	157, 265, 314, 354, 467, 502, 545, 783
FaqI	GGGAC	1 cut(s)	760
FatI	CATG	2 cut(s)	263, 352
FblI	GTMKAC	1 cut(s)	527
Fnu4HI	GCNGC	1 cut(s)	718
FokI	GGATG	2 cut(s)	130, 302
FriOI	GRGCYC	1 cut(s)	592
Fsp4HI	GCNGC	1 cut(s)	718
FspBI	CTAG	2 cut(s)	534, 585
GluI	GCNGC	1 cut(s)	718
HaeIII	GGCC	5 cut(s)	43, 105, 498, 583, 646
HapII	CCGG	2 cut(s)	253, 509
Hin1II	CATG	2 cut(s)	267, 356
HinfI	GANTC	3 cut(s)	65, 256, 456
HpaII	CCGG	2 cut(s)	253, 509
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	3 cut(s)	400, 528, 728
Hpy188I	TCNGA	1 cut(s)	298
Hpy188III	TCNNGA	4 cut(s)	17, 30, 269, 695
Hpy8I	GTNNAC	3 cut(s)	400, 528, 728
HpyAV	CCTTC	6 cut(s)	14, 87, 95, 116, 181, 387
HpyCH4IV	ACGT	1 cut(s)	633
HpyCH4V	TGCA	5 cut(s)	263, 346, 430, 547, 785
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	2 cut(s)	408, 722
HpySE526I	ACGT	1 cut(s)	633
Hsp92II	CATG	2 cut(s)	267, 356
Kzo9I	GATC	5 cut(s)	26, 368, 448, 481, 679
LguI	GCTCTTC	1 cut(s)	707
LmnI	GCTCC	1 cut(s)	393
LweI	GCATC	3 cut(s)	280, 333, 556
MaeI	CTAG	2 cut(s)	534, 585
MaeII	ACGT	1 cut(s)	633
MaeIII	GTNAC	3 cut(s)	335, 572, 611
MalI	GATC	5 cut(s)	28, 370, 450, 483, 681
MboI	GATC	5 cut(s)	26, 368, 448, 481, 679
MboII	GAAGA	6 cut(s)	36, 203, 212, 215, 356, 724
MflI	RGATCY	1 cut(s)	26
MhlI	GDGCHC	2 cut(s)	592, 768
MlsI	TGGCCA	1 cut(s)	43
MluCI	AATT	6 cut(s)	168, 194, 206, 224, 462, 551
MluNI	TGGCCA	1 cut(s)	43
Mox20I	TGGCCA	1 cut(s)	43
Mph1103I	ATGCAT	1 cut(s)	549
MroXI	GAANNNNTTC	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	43
MseI	TTAA	2 cut(s)	71, 555
MslI	CAYNNNNRTG	2 cut(s)	15, 464
Msp20I	TGGCCA	1 cut(s)	43
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	2 cut(s)	253, 509
MspR9I	CCNGG	3 cut(s)	90, 510, 666
MvaI	CCWGG	2 cut(s)	90, 666
MwoI	GCNNNNNNNGC	1 cut(s)	413
NciI	CCSGG	1 cut(s)	510
NdeII	GATC	5 cut(s)	26, 368, 448, 481, 679
NlaIII	CATG	2 cut(s)	267, 356
NlaIV	GGNNCC	1 cut(s)	242
NmeAIII	GCCGAG	1 cut(s)	442
NmuCI	GTSAC	1 cut(s)	335
NsiI	ATGCAT	1 cut(s)	549
NspI	RCATGY	2 cut(s)	267, 356
OliI	CACNNNNGTG	1 cut(s)	15
PceI	AGGCCT	2 cut(s)	105, 646
PciI	ACATGT	1 cut(s)	352
PciSI	GCTCTTC	1 cut(s)	707
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	3 cut(s)	65, 256, 456
PflMI	CCANNNNNTGG	2 cut(s)	116, 494
PfoI	TCCNGGA	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	719
PpuMI	RGGWCCY	1 cut(s)	653
PscI	ACATGT	1 cut(s)	352
PshBI	ATTAAT	1 cut(s)	71
Psp124BI	GAGCTC	1 cut(s)	592
Psp5II	RGGWCCY	1 cut(s)	653
Psp6I	CCWGG	2 cut(s)	88, 664
PspEI	GGTNACC	1 cut(s)	335
PspGI	CCWGG	2 cut(s)	88, 664
PspN4I	GGNNCC	1 cut(s)	242
PspPI	GGNCC	4 cut(s)	497, 581, 623, 653
PspPPI	RGGWCCY	1 cut(s)	653
PsuI	RGATCY	1 cut(s)	26
PvuII	CAGCTG	1 cut(s)	494
RseI	CAYNNNNRTG	2 cut(s)	15, 464
SacI	GAGCTC	1 cut(s)	592
SapI	GCTCTTC	1 cut(s)	707
SaqAI	TTAA	2 cut(s)	71, 555
SatI	GCNGC	1 cut(s)	718
Sau3AI	GATC	5 cut(s)	26, 368, 448, 481, 679
Sau96I	GGNCC	4 cut(s)	497, 581, 623, 653
ScrFI	CCNGG	3 cut(s)	90, 510, 666
SduI	GDGCHC	2 cut(s)	592, 768
SfaNI	GCATC	3 cut(s)	280, 333, 556
SinI	GGWCC	2 cut(s)	623, 653
SmiMI	CAYNNNNRTG	2 cut(s)	15, 464
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	6 cut(s)	168, 194, 206, 224, 462, 551
SseBI	AGGCCT	2 cut(s)	105, 646
SsiI	CCGC	1 cut(s)	718
SspI	AATATT	1 cut(s)	275
SspMI	CTAG	2 cut(s)	534, 585
SstI	GAGCTC	1 cut(s)	592
StuI	AGGCCT	2 cut(s)	105, 646
StyD4I	CCNGG	3 cut(s)	88, 508, 664
StyI	CCWWGG	1 cut(s)	740
TaiI	ACGT	1 cut(s)	636
TaqI	TCGA	4 cut(s)	185, 367, 454, 768
TasI	AATT	6 cut(s)	168, 194, 206, 224, 462, 551
TauI	GCSGC	1 cut(s)	720
TfiI	GAWTC	3 cut(s)	65, 256, 456
Tru1I	TTAA	2 cut(s)	71, 555
Tru9I	TTAA	2 cut(s)	71, 555
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	1 cut(s)	335
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	2 cut(s)	329, 573
TspGWI	ACGGA	1 cut(s)	233
TspRI	CASTG	1 cut(s)	484
Van91I	CCANNNNNTGG	2 cut(s)	116, 494
VpaK11BI	GGWCC	2 cut(s)	623, 653
VspI	ATTAAT	1 cut(s)	71
XapI	RAATTY	1 cut(s)	206
XceI	RCATGY	2 cut(s)	267, 356
XmiI	GTMKAC	1 cut(s)	527
XmnI	GAANNNNTTC	1 cut(s)	207
XspI	CTAG	2 cut(s)	534, 585
Zsp2I	ATGCAT	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.