Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005689.1

Orthogroup ID

OG0002760

Physical Location & Seq

Genomic Coordinates Forward (+)

77120 .. 80889

Gene Structure 3770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005689.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

atgcaagcccctgtgcgttcatcctctacaaaaccatctgtgccggtactaaccttagtgactaagtcagctatagtatcagtgtcatcatcaaagaaggttgacatcccagtcactacactaatggcctgcctctatgttggacaagttgatgtgccatctgcaacgccgattgagactcaactggaagtacaacaaatgcagcaggtggaagaagttcaggcctccccctggcttagtgtacctctaggttttcaaaagcttttgccgagaatagcacaggagtttgctccattagatgaagcaaaaccatccaagaagctatgggtaggtggaattagcccatctgtgtcgaaggaagaattagaagaagaatttctcaagtttggaaaattggaggacttcaggttccgtagagaccggaatcctgcatgtcttgaatattgtagattggaggatgcttctgaaacaatgagtaatatgaatgggaagcgattgggtggtgaccagatgcagatacatgtggattttcttcgatcacaaccttcaacctcaaaaggctcagttctgtgggttgggtaccctccttctgtccaaattgatgaacaaatgctccacaatgccatgattttgtttggtgagattgaaaggattcaaagttttccttcaaggctatactcatttgtcgaattcaggagcgtaaatgaagctcagcgtgccgaggagggtttgcaaggcaggattttcaatgatcctcggatcacaattatgttttcaaccagtgatatgccaccagctggcccataccaaccgggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0000785 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0019219 GO:0019222 GO:0022414 GO:0031047 GO:0031048 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048229 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 SPOC

Protein Analysis

272

Amino Acids

30.41

Weight (kDa)

5.29

Isoelectric Point (pI)

62.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43410 AT2G43410 AT2G43410 AT2G43410 AT2G43410 AT2G43410
fragaria_vesca	FvH4_7g04880 FvH4_7g04880 FvH4_7g04880
malus_domestica	MD04G1045000.v1.1 MD13G1271200.v1.1
prunus_persica	Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1
pyrus_communis	pycom04g03870 pycom13g27540
rosa_chinensis	RchiOBHm_Chr1g0330861
rosa_laevigata	RLG00000029768 RLG00000029781
rosa_multiflora	Rmu_sc0000236.1_g000011 Rmu_sc0000236.1_g000038 Rmu_sc0002899.1_g000006 Rmu_sc0005689.1_g000004 Rmu_sc0005689.1_g000022
rosa_roxburghii	Rroxscaffold_4G00319690 Rroxscaffold_4G00326970 Rroxscaffold_5G00351180
rosa_rugosa	Rorug01G0090800.1 Rorug01G0090900
rosa_samantha	Rh1AG112500 Rh1BG086500 Rh1CG109500 Rh1CG109600 Rh1DG117900
rosa_wichuraiana	Rw1G009100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	196
AasI	GACNNNNNNGTC	1 cut(s)	110
Acc36I	ACCTGC	1 cut(s)	196
Acc65I	GGTACC	1 cut(s)	579
AccB1I	GGYRCC	1 cut(s)	579
AccB7I	CCANNNNNTGG	1 cut(s)	797
AclWI	GGATC	2 cut(s)	746, 767
AcsI	RAATTY	2 cut(s)	374, 689
AcuI	CTGAAG	1 cut(s)	388
AfaI	GTAC	4 cut(s)	48, 192, 243, 581
AfiI	CCNNNNNNNGG	2 cut(s)	231, 797
AflIII	ACRYGT	1 cut(s)	520
AgsI	TTSAA	8 cut(s)	257, 440, 549, 647, 656, 669, 748, 777
AjnI	CCWGG	1 cut(s)	230
AloI	GAACNNNNNNTCC	4 cut(s)	392, 424, 597, 629
AluBI	AGCT	5 cut(s)	71, 262, 322, 710, 797
AluI	AGCT	5 cut(s)	71, 262, 322, 710, 797
Alw26I	GTCTC	2 cut(s)	170, 411
AlwI	GGATC	2 cut(s)	746, 767
AoxI	GGCC	3 cut(s)	126, 222, 799
ApeKI	GCWGC	1 cut(s)	202
ApoI	RAATTY	2 cut(s)	374, 689
Asp700I	GAANNNNTTC	3 cut(s)	216, 375, 651
Asp718I	GGTACC	1 cut(s)	579
AspS9I	GGNCC	1 cut(s)	800
AsuC2I	CCSGG	1 cut(s)	813
AsuHPI	GGTGA	2 cut(s)	515, 650
BanI	GGYRCC	1 cut(s)	579
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	4 cut(s)	43, 166, 319, 352
BciT130I	CCWGG	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	813
BcoDI	GTCTC	2 cut(s)	170, 411
BfaI	CTAG	1 cut(s)	248
BfmI	CTRYAG	1 cut(s)	72
BfuAI	ACCTGC	1 cut(s)	196
BisI	GCNGC	1 cut(s)	203
BlpI	GCTNAGC	1 cut(s)	711
BlsI	GCNGC	1 cut(s)	204
Bme1390I	CCNGG	2 cut(s)	232, 813
BmgT120I	GGNCC	1 cut(s)	800
BmiI	GGNNCC	2 cut(s)	410, 581
BmrFI	CCNGG	2 cut(s)	232, 813
BmrI	ACTGGG	1 cut(s)	104
BmsI	GCATC	2 cut(s)	448, 501
BmuI	ACTGGG	1 cut(s)	104
Bpu1102I	GCTNAGC	1 cut(s)	711
BpuEI	CTTGAG	1 cut(s)	365
BpuMI	CCSGG	1 cut(s)	813
BsaI	GGTCTC	1 cut(s)	411
BsaJI	CCNNGG	3 cut(s)	230, 720, 755
BsaWI	WCCGGW	1 cut(s)	420
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	2 cut(s)	231, 797
Bse118I	RCCGGY	1 cut(s)	43
Bse1I	ACTGG	3 cut(s)	110, 189, 780
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	3 cut(s)	230, 720, 755
BseGI	GGATG	4 cut(s)	20, 105, 311, 463
BseLI	CCNNNNNNNGG	2 cut(s)	231, 797
BseMII	CTCAG	2 cut(s)	576, 725
BseNI	ACTGG	3 cut(s)	110, 189, 780
BseRI	GAGGAG	1 cut(s)	737
BseXI	GCAGC	1 cut(s)	214
BshFI	GGCC	3 cut(s)	128, 224, 801
BshNI	GGYRCC	1 cut(s)	579
BsiSI	CCGG	3 cut(s)	44, 421, 812
BslI	CCNNNNNNNGG	2 cut(s)	231, 797
BsmAI	GTCTC	2 cut(s)	170, 411
BsnI	GGCC	3 cut(s)	128, 224, 801
Bso31I	GGTCTC	1 cut(s)	411
Bsp143I	GATC	3 cut(s)	536, 751, 759
Bsp1720I	GCTNAGC	1 cut(s)	711
BspANI	GGCC	3 cut(s)	128, 224, 801
BspCNI	CTCAG	2 cut(s)	575, 724
BspLI	GGNNCC	2 cut(s)	410, 581
BspMI	ACCTGC	1 cut(s)	196
BspPI	GGATC	2 cut(s)	746, 767
BspT107I	GGYRCC	1 cut(s)	579
BspTNI	GGTCTC	1 cut(s)	411
BsrFI	RCCGGY	1 cut(s)	43
BsrI	ACTGG	3 cut(s)	110, 189, 780
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	3 cut(s)	230, 720, 755
BssMI	GATC	3 cut(s)	536, 751, 759
Bst2UI	CCWGG	1 cut(s)	232
BstC8I	GCNNGC	4 cut(s)	6, 130, 717, 799
BstDEI	CTNAG	5 cut(s)	55, 63, 236, 562, 711
BstEII	GGTNACC	1 cut(s)	503
BstF5I	GGATG	4 cut(s)	20, 105, 311, 463
BstKTI	GATC	3 cut(s)	539, 754, 762
BstMAI	GTCTC	2 cut(s)	170, 411
BstMBI	GATC	3 cut(s)	536, 751, 759
BstMWI	GCNNNNNNNGC	1 cut(s)	716
BstNI	CCWGG	1 cut(s)	232
BstNSI	RCATGY	2 cut(s)	435, 524
BstPI	GGTNACC	1 cut(s)	503
BstSCI	CCNGG	2 cut(s)	230, 811
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	214
BsuRI	GGCC	3 cut(s)	128, 224, 801
BtsCI	GGATG	4 cut(s)	20, 105, 311, 463
BtsIMutI	CAGTG	2 cut(s)	87, 787
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	4 cut(s)	6, 130, 717, 799
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	800
Csp6I	GTAC	4 cut(s)	47, 191, 242, 580
CviAII	CATG	3 cut(s)	432, 521, 625
CviQI	GTAC	4 cut(s)	47, 191, 242, 580
DdeI	CTNAG	5 cut(s)	55, 63, 236, 562, 711
DpnI	GATC	3 cut(s)	538, 753, 761
DpnII	GATC	3 cut(s)	536, 751, 759
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
Eco147I	AGGCCT	1 cut(s)	224
Eco31I	GGTCTC	1 cut(s)	411
Eco57I	CTGAAG	1 cut(s)	388
Eco91I	GGTNACC	1 cut(s)	503
EcoO65I	GGTNACC	1 cut(s)	503
EcoRI	GAATTC	1 cut(s)	689
EcoRII	CCWGG	1 cut(s)	230
FaeI	CATG	3 cut(s)	435, 524, 628
FalI	AAGNNNNNCTT	2 cut(s)	649, 681
FatI	CATG	3 cut(s)	431, 520, 624
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	4 cut(s)	7, 92, 298, 470
Fsp4HI	GCNGC	1 cut(s)	203
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	1 cut(s)	203
HaeIII	GGCC	3 cut(s)	128, 224, 801
HapII	CCGG	3 cut(s)	44, 421, 812
Hin1II	CATG	3 cut(s)	435, 524, 628
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	3 cut(s)	178, 424, 652
HpaII	CCGG	3 cut(s)	44, 421, 812
HphI	GGTGA	2 cut(s)	515, 650
Hpy166II	GTNNAC	2 cut(s)	103, 242
Hpy188I	TCNGA	2 cut(s)	466, 759
Hpy188III	TCNNGA	2 cut(s)	437, 694
Hpy8I	GTNNAC	2 cut(s)	103, 242
HpyAV	CCTTC	5 cut(s)	91, 349, 555, 597, 675
HpyCH4V	TGCA	6 cut(s)	4, 164, 202, 431, 514, 733
HpyF10VI	GCNNNNNNNGC	1 cut(s)	716
HpyF3I	CTNAG	5 cut(s)	55, 63, 236, 562, 711
Hsp92II	CATG	3 cut(s)	435, 524, 628
KpnI	GGTACC	1 cut(s)	583
Kzo9I	GATC	3 cut(s)	536, 751, 759
LmnI	GCTCC	3 cut(s)	295, 618, 696
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	2 cut(s)	448, 501
MaeI	CTAG	1 cut(s)	248
MaeIII	GTNAC	3 cut(s)	58, 112, 503
MalI	GATC	3 cut(s)	538, 753, 761
MboI	GATC	3 cut(s)	536, 751, 759
MboII	GAAGA	5 cut(s)	224, 371, 380, 383, 524
MluCI	AATT	7 cut(s)	336, 362, 374, 392, 597, 689, 765
MlyI	GAGTC	1 cut(s)	172
MmeI	TCCRAC	1 cut(s)	121
MroXI	GAANNNNTTC	3 cut(s)	216, 375, 651
MslI	CAYNNNNRTG	1 cut(s)	767
MspA1I	CMGCKG	1 cut(s)	797
MspI	CCGG	3 cut(s)	44, 421, 812
MspR9I	CCNGG	2 cut(s)	232, 813
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	1 cut(s)	716
NciI	CCSGG	1 cut(s)	813
NdeII	GATC	3 cut(s)	536, 751, 759
NlaIII	CATG	3 cut(s)	435, 524, 628
NlaIV	GGNNCC	2 cut(s)	410, 581
NmeAIII	GCCGAG	2 cut(s)	294, 745
NmuCI	GTSAC	3 cut(s)	58, 112, 503
NspI	RCATGY	2 cut(s)	435, 524
PaqCI	CACCTGC	1 cut(s)	196
PceI	AGGCCT	1 cut(s)	224
PciI	ACATGT	1 cut(s)	520
PdmI	GAANNNNTTC	3 cut(s)	216, 375, 651
PfeI	GAWTC	2 cut(s)	424, 652
PflFI	GACNNNGTC	1 cut(s)	64
PflMI	CCANNNNNTGG	1 cut(s)	797
PkrI	GCNGC	1 cut(s)	204
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PscI	ACATGT	1 cut(s)	520
Psp6I	CCWGG	1 cut(s)	230
PspEI	GGTNACC	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	410, 581
PspPI	GGNCC	1 cut(s)	800
PsyI	GACNNNGTC	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	797
RsaI	GTAC	4 cut(s)	48, 192, 243, 581
RsaNI	GTAC	4 cut(s)	47, 191, 242, 580
RseI	CAYNNNNRTG	1 cut(s)	767
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	3 cut(s)	536, 751, 759
Sau96I	GGNCC	1 cut(s)	800
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	2 cut(s)	232, 813
SfaNI	GCATC	2 cut(s)	448, 501
SfcI	CTRYAG	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	767
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	7 cut(s)	336, 362, 374, 392, 597, 689, 765
SseBI	AGGCCT	1 cut(s)	224
SspI	AATATT	1 cut(s)	443
SspMI	CTAG	1 cut(s)	248
StuI	AGGCCT	1 cut(s)	224
StyD4I	CCNGG	2 cut(s)	230, 811
TaqI	TCGA	3 cut(s)	353, 535, 687
TasI	AATT	7 cut(s)	336, 362, 374, 392, 597, 689, 765
TatI	WGTACW	1 cut(s)	190
TfiI	GAWTC	2 cut(s)	424, 652
TscAI	CASTG	2 cut(s)	87, 787
TseFI	GTSAC	3 cut(s)	58, 112, 503
TseI	GCWGC	1 cut(s)	202
Tsp45I	GTSAC	3 cut(s)	58, 112, 503
TspDTI	ATGAA	5 cut(s)	9, 315, 497, 618, 720
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	2 cut(s)	87, 787
Tth111I	GACNNNGTC	1 cut(s)	64
Van91I	CCANNNNNTGG	1 cut(s)	797
XapI	RAATTY	2 cut(s)	374, 689
XceI	RCATGY	2 cut(s)	435, 524
XmnI	GAANNNNTTC	3 cut(s)	216, 375, 651
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.