Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002760

Physical Location & Seq

Genomic Coordinates Forward (+)

13662979 .. 13681328

Gene Structure 18350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG086500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2136 bp

ATGAGAAATATGAATGGGAAGCGATTGGGTGGTGACCAGATGCAGATACATGTGGATTTTCTTCGATCACAACCTTCGACCTCAAGAAGGGAACAGTTGCCTGACTACCGAGATGGACAGTTTCTTGGCAGAGGTATCATGGGGCCTGCTGCTGATTCTCATTCTGGTCATAAAAGAAAACAGCCTTATTCTCAAATTTCTGGCCAACCCAGTAGCTCAGTTCTGTGGGTTGGGTACCCTCCTTCTGTCCAAATTGACGAACAAATGCTCCACAATGCCATGATTTTGTTTGGTGAGATTGAGAGGATTAAAAGTTTTCCTTCAAGGCACTACTCATTTGTCGAATTCAGGAGCGTAGACGAAGCTCGGCGTGCCAAGGAGGGTTTGCAAGGCAGGCTTTTCAATGATCCTCGGATCACAATTATGTTTTCAACCAGTGATCTGCCACCAGCTGGCCCATACCAACCGGGAGGAGGCAAATGGTCTACTCCTAGACCTGATATGCATCTATTTAATGAACATTCAATGAGCAACTTAGGGCCTGGAGCTCTACCACAAAGTCCAAGTGGTAACTTTCTTGGACCAAATGACGTTCCAATGAGGCCTTTAGGTCCTCTGCCTCCTGGTAGATTTGATGATCTGCTTTATTATCAAGATGGCAGTTCCAAGAAGAGCCGCCTTAGTCCACCTGGTGTCAGGGGCATAGTTGGAGGTCCTAGGCCTCCTGATGATGATTACATCTGGCGTGGCATTATTGCCAAGGGTGGAACACCCATTTGTCGTGCTCGTTGCGTCCCTGTAGGCAAAGGGATAAGAATTGAGATTCCTGAAATTGTTAATTGTTCAGCTAGAACTGGATTGGATATGCTGACAAAACACTTTGCTGAGGCCATTGCATTCGACATTATGTTCTTCTTGCCAGACAGTGAAGATGATTTTGCTTCCTACACTGAATTCCTTCATTATCTAGGTGCGAAAAACCGTGCTGGTGTTGCAAAGTTTGATGATGGGATGACATTGTTTTTAGTACCTCCTTCAGACTTCTTGAAGACTGTTTTGAAAGTTGCCGGCCCTGAACGTCTGTATGGTGTGGTTCTCAAGTTTCCACAACAAGTTCCTAGTGCTGCTTCCATTCAGCAACCATCACATCTACCCATTGAATCTTCACAATATATAGATAAACAGCAGATTCCTCCTATACATGCTGAGTATACCATTCCATCAAAGGATGAACATGGTTTTCCTATGGAATATTATAACAGGGTTTCAAGTGAGGACTCAAAGCTTTCTTCAAAATCACTGTTTCCACCTACTAGCGATTCTTCTATGGTGCAGTCAGTAACCCAAGATTATTTCTCTAAATATAGTAATAGTGCTGCAGTATCACAGGCTGGAGTTCCATTATTAACACCTGAGCTTATTGGCTCTCTGGCGACTTTACTGCCTGGAAATGCACAGCCGTCTTTGCCAGAAAGTTCGAAGCTATCGGCATGGGAAACAAGATCAGCAGTTAGGCCCTCATTTCCTGGATGGAAACAAGATCAACAAATTTCTGATCACACCGGTCATGCATTGCAACAACAGTTAGGTAGTCAGTTCAATCCACAAGAACAAAGTCTTCCACAGTACCAGCCTACTTATCCATCCGGTTCAAACACATCAAGTTACCACTCTGGTCCACTGGTGCTTGGTAGCACCCAAATGCCAGATTCTTCTTCTGTCAGTCTGCCTCTGCCGCAGGCTGCAAGTTCTTCTAGGCCCTTGAGTAATTTTATGGTACCTTCTCAAGGTGGACAGATTACTGGATCCTCGCTTCCCAGTCATCCAAATTATTTGGCTGAAGCTCTGCCTGTCAGTAGTTATATGACCTCTTCTGGTGGTAATTTGCAGTCTGATCAGACCTTTGTGCCATTAGGGGCTAATAAAGTTAACTCAGAATACCCAAATCAGATGCAGCAGCTTCATTCTGCACTTCTGGGTGCTGGTCAGAGTACCTCAGAGGGTGAGGCGGACAAAAATCATCGCTATCAGTCCACACTTCAATTCGCTGCTAACCTTCTTCTCCAATTACAGCAGCAACAACAACAGCAGCAAATGGGTGGTCAAGCGAGCAAAGGGTCTGGAAGTCAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0000785 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0019219 GO:0019222 GO:0022414 GO:0031047 GO:0031048 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048229 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 SPOC

Protein Analysis

711

Amino Acids

77.65

Weight (kDa)

6.66

Isoelectric Point (pI)

60.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	85 - 139	3.6e-07	RNA recognition motif
SPOC	PF07744	242 - 367	6.1e-25	SPOC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43410 AT2G43410 AT2G43410 AT2G43410 AT2G43410 AT2G43410
fragaria_vesca	FvH4_7g04880 FvH4_7g04880 FvH4_7g04880
malus_domestica	MD04G1045000.v1.1 MD13G1271200.v1.1
prunus_persica	Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1
pyrus_communis	pycom04g03870 pycom13g27540
rosa_chinensis	RchiOBHm_Chr1g0330861
rosa_laevigata	RLG00000029768 RLG00000029781
rosa_multiflora	Rmu_sc0000236.1_g000011 Rmu_sc0000236.1_g000038 Rmu_sc0002899.1_g000006 Rmu_sc0005689.1_g000004 Rmu_sc0005689.1_g000022
rosa_roxburghii	Rroxscaffold_4G00319690 Rroxscaffold_4G00326970 Rroxscaffold_5G00351180
rosa_rugosa	Rorug01G0090800.1 Rorug01G0090900
rosa_samantha	Rh1AG112500 Rh1BG086500 Rh1CG109500 Rh1CG109600 Rh1DG117900
rosa_wichuraiana	Rw1G009100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1257
Acc65I	GGTACC	2 cut(s)	234, 1777
AccB1I	GGYRCC	2 cut(s)	234, 1777
AccB7I	CCANNNNNTGG	1 cut(s)	452
AccI	GTMKAC	3 cut(s)	357, 485, 1211
AciI	CCGC	3 cut(s)	676, 1736, 2009
AclWI	GGATC	4 cut(s)	401, 422, 1800, 1813
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	4 cut(s)	195, 344, 953, 1548
AcuI	CTGAAG	2 cut(s)	1020, 1860
AdeI	CACNNNGTG	1 cut(s)	692
AfaI	GTAC	5 cut(s)	236, 1029, 1628, 1779, 1993
AfiI	CCNNNNNNNGG	4 cut(s)	87, 452, 473, 1787
AflIII	ACRYGT	1 cut(s)	49
AgeI	ACCGGT	1 cut(s)	1562
AjnI	CCWGG	5 cut(s)	541, 622, 688, 1444, 1525
AloI	GAACNNNNNNTCC	2 cut(s)	252, 284
Alw21I	GWGCWC	2 cut(s)	550, 787
AlwI	GGATC	4 cut(s)	401, 422, 1800, 1813
ApeKI	GCWGC	9 cut(s)	149, 1124, 1376, 1742, 1954, 1957, 2048, 2074, 2089
ApoI	RAATTY	4 cut(s)	195, 344, 953, 1548
ArsI	GACNNNNNNTTYG	2 cut(s)	2086, 2118
AsiGI	ACCGGT	1 cut(s)	1562
Asp700I	GAANNNNTTC	1 cut(s)	957
Asp718I	GGTACC	2 cut(s)	234, 1777
AspA2I	CCTAGG	1 cut(s)	716
AsuC2I	CCSGG	1 cut(s)	468
AsuHPI	GGTGA	3 cut(s)	44, 305, 2015
AsuII	TTCGAA	1 cut(s)	1478
AvaII	GGWCC	4 cut(s)	581, 611, 713, 1676
AvrII	CCTAGG	1 cut(s)	716
BalI	TGGCCA	1 cut(s)	204
BamHI	GGATCC	1 cut(s)	1805
BanI	GGYRCC	2 cut(s)	234, 1777
BanII	GRGCYC	1 cut(s)	550
BbsI	GAAGAC	2 cut(s)	1055, 1610
Bbv12I	GWGCWC	2 cut(s)	550, 787
BbvCI	CCTCAGC	1 cut(s)	885
BbvI	GCAGC	9 cut(s)	136, 1111, 1363, 1729, 1966, 1969, 2035, 2086, 2101
BccI	CCATC	7 cut(s)	107, 650, 1001, 1150, 1228, 1524, 1651
BceAI	ACGGC	1 cut(s)	1444
BcgI	CGANNNNNNTGC	2 cut(s)	1423, 1457
BciT130I	CCWGG	5 cut(s)	543, 624, 690, 1446, 1527
BclI	TGATCA	2 cut(s)	1555, 1894
BcnI	CCSGG	1 cut(s)	468
BfaI	CTAG	7 cut(s)	492, 717, 849, 968, 1119, 1314, 1755
BfmI	CTRYAG	2 cut(s)	798, 1377
BlnI	CCTAGG	1 cut(s)	716
Bme1390I	CCNGG	6 cut(s)	468, 543, 624, 690, 1446, 1527
Bme18I	GGWCC	4 cut(s)	581, 611, 713, 1676
BmiI	GGNNCC	4 cut(s)	144, 236, 1779, 1807
BmrFI	CCNGG	6 cut(s)	468, 543, 624, 690, 1446, 1527
BmrI	ACTGGG	2 cut(s)	204, 1812
BmsI	GCATC	3 cut(s)	30, 514, 1941
BmuI	ACTGGG	2 cut(s)	204, 1812
BpiI	GAAGAC	2 cut(s)	1055, 1610
BpmI	CTGGAG	2 cut(s)	564, 1413
Bpu10I	CCTNAGC	2 cut(s)	885, 1413
Bpu14I	TTCGAA	1 cut(s)	1478
BpuEI	CTTGAG	4 cut(s)	67, 1082, 1770, 1783
BpuMI	CCSGG	1 cut(s)	468
BsaBI	GATNNNNATC	1 cut(s)	504
BsaJI	CCNNGG	4 cut(s)	375, 410, 716, 759
BsaWI	WCCGGW	2 cut(s)	1562, 1646
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bsc4I	CCNNNNNNNGG	4 cut(s)	87, 452, 473, 1787
Bse118I	RCCGGY	2 cut(s)	1067, 1562
Bse1I	ACTGG	6 cut(s)	210, 435, 859, 1686, 1807, 1818
Bse3DI	GCAATG	2 cut(s)	891, 1571
Bse8I	GATNNNNATC	1 cut(s)	504
BseBI	CCWGG	5 cut(s)	543, 624, 690, 1446, 1527
BseDI	CCNNGG	4 cut(s)	375, 410, 716, 759
BseGI	GGATG	5 cut(s)	1017, 1234, 1535, 1643, 1822
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	4 cut(s)	87, 452, 473, 1787
BseMI	GCAATG	2 cut(s)	891, 1571
BseMII	CTCAG	6 cut(s)	231, 876, 1197, 1404, 1947, 2010
BseNI	ACTGG	6 cut(s)	210, 435, 859, 1686, 1807, 1818
BseRI	GAGGAG	1 cut(s)	486
BseXI	GCAGC	9 cut(s)	136, 1111, 1363, 1729, 1966, 1969, 2035, 2086, 2101
BsgI	GTGCAG	2 cut(s)	1352, 1953
BshNI	GGYRCC	2 cut(s)	234, 1777
BshTI	ACCGGT	1 cut(s)	1562
BsiHKAI	GWGCWC	2 cut(s)	550, 787
BsiSI	CCGG	4 cut(s)	467, 1068, 1563, 1647
BslFI	GGGAC	1 cut(s)	779
BslI	CCNNNNNNNGG	4 cut(s)	87, 452, 473, 1787
BsmFI	GGGAC	1 cut(s)	779
BsmI	GAATGC	1 cut(s)	896
Bsp119I	TTCGAA	1 cut(s)	1478
Bsp1286I	GDGCHC	2 cut(s)	550, 787
BspACI	CCGC	3 cut(s)	676, 1736, 2009
BspCNI	CTCAG	6 cut(s)	230, 877, 1198, 1405, 1946, 2009
BspLI	GGNNCC	4 cut(s)	144, 236, 1779, 1807
BspMAI	CTGCAG	1 cut(s)	1381
BspPI	GGATC	4 cut(s)	401, 422, 1800, 1813
BspQI	GCTCTTC	1 cut(s)	665
BspT104I	TTCGAA	1 cut(s)	1478
BspT107I	GGYRCC	2 cut(s)	234, 1777
BsrDI	GCAATG	2 cut(s)	891, 1571
BsrFI	RCCGGY	2 cut(s)	1067, 1562
BsrI	ACTGG	6 cut(s)	210, 435, 859, 1686, 1807, 1818
BssAI	RCCGGY	2 cut(s)	1067, 1562
BssECI	CCNNGG	4 cut(s)	375, 410, 716, 759
BssNAI	GTATAC	1 cut(s)	1212
BssT1I	CCWWGG	3 cut(s)	375, 716, 759
Bst1107I	GTATAC	1 cut(s)	1212
Bst2UI	CCWGG	5 cut(s)	543, 624, 690, 1446, 1527
Bst4CI	ACNGT	8 cut(s)	96, 120, 926, 983, 1054, 1302, 1584, 1626
Bst6I	CTCTTC	2 cut(s)	665, 1876
BstBI	TTCGAA	1 cut(s)	1478
BstC8I	GCNNGC	7 cut(s)	147, 372, 395, 454, 1069, 1740, 2110
BstDEI	CTNAG	8 cut(s)	217, 535, 680, 885, 1206, 1413, 1933, 1996
BstEII	GGTNACC	1 cut(s)	32
BstENI	CCTNNNNNAGG	2 cut(s)	85, 1785
BstF5I	GGATG	5 cut(s)	1017, 1234, 1535, 1643, 1822
BstMWI	GCNNNNNNNGC	5 cut(s)	371, 394, 992, 1465, 1735
BstNI	CCWGG	5 cut(s)	543, 624, 690, 1446, 1527
BstNSI	RCATGY	2 cut(s)	53, 1205
BstPI	GGTNACC	1 cut(s)	32
BstSCI	CCNGG	6 cut(s)	466, 541, 622, 688, 1444, 1525
BstSFI	CTRYAG	2 cut(s)	798, 1377
BstV1I	GCAGC	9 cut(s)	136, 1111, 1363, 1729, 1966, 1969, 2035, 2086, 2101
BstV2I	GAAGAC	2 cut(s)	1055, 1610
BstX2I	RGATCY	1 cut(s)	1805
BstYI	RGATCY	1 cut(s)	1805
BstZ17I	GTATAC	1 cut(s)	1212
BtgZI	GCGATG	1 cut(s)	2006
BtsCI	GGATG	5 cut(s)	1017, 1234, 1535, 1643, 1822
BtsIMutI	CAGTG	5 cut(s)	442, 931, 948, 1298, 1679
Cac8I	GCNNGC	7 cut(s)	147, 372, 395, 454, 1069, 1740, 2110
Cfr10I	RCCGGY	2 cut(s)	1067, 1562
CseI	GACGC	1 cut(s)	781
CsiI	ACCWGGT	1 cut(s)	688
Csp6I	GTAC	5 cut(s)	235, 1028, 1627, 1778, 1992
CspAI	ACCGGT	1 cut(s)	1562
CviAII	CATG	7 cut(s)	50, 139, 280, 1202, 1235, 1491, 1568
CviQI	GTAC	5 cut(s)	235, 1028, 1627, 1778, 1992
DdeI	CTNAG	8 cut(s)	217, 535, 680, 885, 1206, 1413, 1933, 1996
DraIII	CACNNNGTG	1 cut(s)	692
EaeI	YGGCCR	1 cut(s)	202
Eam1104I	CTCTTC	2 cut(s)	665, 1876
EarI	CTCTTC	2 cut(s)	665, 1876
EciI	GGCGGA	1 cut(s)	2024
Ecl136II	GAGCTC	1 cut(s)	548
Eco130I	CCWWGG	3 cut(s)	375, 716, 759
Eco147I	AGGCCT	2 cut(s)	604, 721
Eco24I	GRGCYC	1 cut(s)	550
Eco47I	GGWCC	4 cut(s)	581, 611, 713, 1676
Eco53kI	GAGCTC	1 cut(s)	548
Eco57I	CTGAAG	2 cut(s)	1020, 1860
Eco91I	GGTNACC	1 cut(s)	32
EcoICRI	GAGCTC	1 cut(s)	548
EcoNI	CCTNNNNNAGG	2 cut(s)	85, 1785
EcoO109I	RGGNCCY	6 cut(s)	143, 539, 611, 713, 1515, 1758
EcoO65I	GGTNACC	1 cut(s)	32
EcoRI	GAATTC	2 cut(s)	344, 953
EcoRII	CCWGG	5 cut(s)	541, 622, 688, 1444, 1525
EcoT14I	CCWWGG	3 cut(s)	375, 716, 759
EcoT22I	ATGCAT	2 cut(s)	507, 1573
EcoT38I	GRGCYC	1 cut(s)	550
ErhI	CCWWGG	3 cut(s)	375, 716, 759
FaeI	CATG	7 cut(s)	53, 142, 283, 1205, 1238, 1494, 1571
FalI	AAGNNNNNCTT	4 cut(s)	304, 336, 381, 413
FaqI	GGGAC	1 cut(s)	779
FatI	CATG	7 cut(s)	49, 138, 279, 1201, 1234, 1490, 1567
FbaI	TGATCA	2 cut(s)	1555, 1894
FblI	GTMKAC	3 cut(s)	357, 485, 1211
FokI	GGATG	5 cut(s)	1024, 1241, 1542, 1630, 1809
FriOI	GRGCYC	1 cut(s)	550
FspBI	CTAG	7 cut(s)	492, 717, 849, 968, 1119, 1314, 1755
GsuI	CTGGAG	2 cut(s)	564, 1413
HapII	CCGG	4 cut(s)	467, 1068, 1563, 1647
HgaI	GACGC	1 cut(s)	781
Hin1II	CATG	7 cut(s)	53, 142, 283, 1205, 1238, 1494, 1571
HincII	GTYRAC	2 cut(s)	1930, 2129
HindII	GTYRAC	2 cut(s)	1930, 2129
HindIII	AAGCTT	1 cut(s)	1283
HinfI	GANTC	7 cut(s)	155, 823, 1160, 1189, 1277, 1319, 1709
HpaI	GTTAAC	1 cut(s)	1930
HpaII	CCGG	4 cut(s)	467, 1068, 1563, 1647
HphI	GGTGA	3 cut(s)	44, 305, 2015
Hpy166II	GTNNAC	9 cut(s)	358, 486, 686, 1212, 1679, 1793, 1930, 2034, 2129
Hpy188I	TCNGA	9 cut(s)	414, 1039, 1555, 1894, 1899, 1936, 1950, 1989, 1999
Hpy188III	TCNNGA	7 cut(s)	84, 349, 653, 725, 827, 1045, 2121
Hpy8I	GTNNAC	9 cut(s)	358, 486, 686, 1212, 1679, 1793, 1930, 2034, 2129
HpyAV	CCTTC	8 cut(s)	81, 84, 252, 330, 968, 1044, 1791, 2066
HpyCH4III	ACNGT	8 cut(s)	96, 120, 926, 983, 1054, 1302, 1584, 1626
HpyCH4IV	ACGT	2 cut(s)	591, 1078
HpyF10VI	GCNNNNNNNGC	5 cut(s)	371, 394, 992, 1465, 1735
HpyF3I	CTNAG	8 cut(s)	217, 535, 680, 885, 1206, 1413, 1933, 1996
HpySE526I	ACGT	2 cut(s)	591, 1078
Hsp92II	CATG	7 cut(s)	53, 142, 283, 1205, 1238, 1494, 1571
KpnI	GGTACC	2 cut(s)	238, 1781
KroI	GCCGGC	1 cut(s)	1067
KroNI	GCCGGC	1 cut(s)	1069
Ksp22I	TGATCA	2 cut(s)	1555, 1894
KspAI	GTTAAC	1 cut(s)	1930
LguI	GCTCTTC	1 cut(s)	665
LmnI	GCTCC	3 cut(s)	273, 351, 545
Lsp1109I	GCAGC	9 cut(s)	136, 1111, 1363, 1729, 1966, 1969, 2035, 2086, 2101
LweI	GCATC	3 cut(s)	30, 514, 1941
MabI	ACCWGGT	1 cut(s)	688
MaeI	CTAG	7 cut(s)	492, 717, 849, 968, 1119, 1314, 1755
MaeII	ACGT	2 cut(s)	591, 1078
MaeIII	GTNAC	4 cut(s)	32, 569, 1339, 1664
MflI	RGATCY	1 cut(s)	1805
MhlI	GDGCHC	2 cut(s)	550, 787
MlsI	TGGCCA	1 cut(s)	204
MluNI	TGGCCA	1 cut(s)	204
MlyI	GAGTC	1 cut(s)	1271
MmeI	TCCRAC	1 cut(s)	688
Mox20I	TGGCCA	1 cut(s)	204
Mph1103I	ATGCAT	2 cut(s)	507, 1573
MroNI	GCCGGC	1 cut(s)	1067
MroXI	GAANNNNTTC	1 cut(s)	957
MscI	TGGCCA	1 cut(s)	204
MseI	TTAA	5 cut(s)	309, 513, 837, 1406, 1929
MslI	CAYNNNNRTG	2 cut(s)	422, 1700
Msp20I	TGGCCA	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	4 cut(s)	467, 1068, 1563, 1647
MspR9I	CCNGG	6 cut(s)	468, 543, 624, 690, 1446, 1527
Mva1269I	GAATGC	1 cut(s)	896
MvaI	CCWGG	5 cut(s)	543, 624, 690, 1446, 1527
MwoI	GCNNNNNNNGC	5 cut(s)	371, 394, 992, 1465, 1735
NaeI	GCCGGC	1 cut(s)	1069
NciI	CCSGG	1 cut(s)	468
NgoMIV	GCCGGC	1 cut(s)	1067
NlaIII	CATG	7 cut(s)	53, 142, 283, 1205, 1238, 1494, 1571
NlaIV	GGNNCC	4 cut(s)	144, 236, 1779, 1807
NmeAIII	GCCGAG	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	32
NsiI	ATGCAT	2 cut(s)	507, 1573
NspI	RCATGY	2 cut(s)	53, 1205
NspV	TTCGAA	1 cut(s)	1478
PceI	AGGCCT	2 cut(s)	604, 721
PciI	ACATGT	1 cut(s)	49
PciSI	GCTCTTC	1 cut(s)	665
PctI	GAATGC	1 cut(s)	896
PdiI	GCCGGC	1 cut(s)	1069
PdmI	GAANNNNTTC	1 cut(s)	957
PfeI	GAWTC	6 cut(s)	155, 823, 1160, 1189, 1319, 1709
PflMI	CCANNNNNTGG	1 cut(s)	452
PfoI	TCCNGGA	1 cut(s)	1525
PinAI	ACCGGT	1 cut(s)	1562
PleI	GAGTC	1 cut(s)	1271
PpsI	GAGTC	1 cut(s)	1271
PpuMI	RGGWCCY	2 cut(s)	611, 713
PscI	ACATGT	1 cut(s)	49
PsiI	TTATAA	1 cut(s)	1257
Psp124BI	GAGCTC	1 cut(s)	550
Psp5II	RGGWCCY	2 cut(s)	611, 713
Psp6I	CCWGG	5 cut(s)	541, 622, 688, 1444, 1525
PspEI	GGTNACC	1 cut(s)	32
PspGI	CCWGG	5 cut(s)	541, 622, 688, 1444, 1525
PspN4I	GGNNCC	4 cut(s)	144, 236, 1779, 1807
PspPPI	RGGWCCY	2 cut(s)	611, 713
PstI	CTGCAG	1 cut(s)	1381
PsuI	RGATCY	1 cut(s)	1805
PvuII	CAGCTG	1 cut(s)	452
RsaI	GTAC	5 cut(s)	236, 1029, 1628, 1779, 1993
RsaNI	GTAC	5 cut(s)	235, 1028, 1627, 1778, 1992
RseI	CAYNNNNRTG	2 cut(s)	422, 1700
SacI	GAGCTC	1 cut(s)	550
SapI	GCTCTTC	1 cut(s)	665
SaqAI	TTAA	5 cut(s)	309, 513, 837, 1406, 1929
SchI	GAGTC	1 cut(s)	1271
ScrFI	CCNGG	6 cut(s)	468, 543, 624, 690, 1446, 1527
SduI	GDGCHC	2 cut(s)	550, 787
SexAI	ACCWGGT	1 cut(s)	688
SfaNI	GCATC	3 cut(s)	30, 514, 1941
SfcI	CTRYAG	2 cut(s)	798, 1377
SfuI	TTCGAA	1 cut(s)	1478
SinI	GGWCC	4 cut(s)	581, 611, 713, 1676
SmiMI	CAYNNNNRTG	2 cut(s)	422, 1700
SmlI	CTYRAG	4 cut(s)	82, 1097, 1762, 1785
SmoI	CTYRAG	4 cut(s)	82, 1097, 1762, 1785
SseBI	AGGCCT	2 cut(s)	604, 721
SsiI	CCGC	3 cut(s)	676, 1736, 2009
SspI	AATATT	1 cut(s)	1253
SspMI	CTAG	7 cut(s)	492, 717, 849, 968, 1119, 1314, 1755
SstI	GAGCTC	1 cut(s)	550
StuI	AGGCCT	2 cut(s)	604, 721
StyD4I	CCNGG	6 cut(s)	466, 541, 622, 688, 1444, 1525
StyI	CCWWGG	3 cut(s)	375, 716, 759
TaaI	ACNGT	8 cut(s)	96, 120, 926, 983, 1054, 1302, 1584, 1626
TaiI	ACGT	2 cut(s)	594, 1081
TaqI	TCGA	5 cut(s)	64, 77, 342, 900, 1478
TauI	GCSGC	2 cut(s)	678, 1738
TfiI	GAWTC	6 cut(s)	155, 823, 1160, 1189, 1319, 1709
Tru1I	TTAA	5 cut(s)	309, 513, 837, 1406, 1929
Tru9I	TTAA	5 cut(s)	309, 513, 837, 1406, 1929
TscAI	CASTG	5 cut(s)	442, 931, 955, 1305, 1686
TseFI	GTSAC	1 cut(s)	32
TseI	GCWGC	9 cut(s)	149, 1124, 1376, 1742, 1954, 1957, 2048, 2074, 2089
Tsp45I	GTSAC	1 cut(s)	32
TspDTI	ATGAA	5 cut(s)	26, 531, 950, 1245, 1952
TspRI	CASTG	5 cut(s)	442, 931, 955, 1305, 1686
Van91I	CCANNNNNTGG	1 cut(s)	452
VpaK11BI	GGWCC	4 cut(s)	581, 611, 713, 1676
XagI	CCTNNNNNAGG	2 cut(s)	85, 1785
XapI	RAATTY	4 cut(s)	195, 344, 953, 1548
XceI	RCATGY	2 cut(s)	53, 1205
XmaJI	CCTAGG	1 cut(s)	716
XmiI	GTMKAC	3 cut(s)	357, 485, 1211
XmnI	GAANNNNTTC	1 cut(s)	957
XspI	CTAG	7 cut(s)	492, 717, 849, 968, 1119, 1314, 1755
Zsp2I	ATGCAT	2 cut(s)	507, 1573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.