Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002760

Physical Location & Seq

Genomic Coordinates Reverse (-)

59303771 .. 59304582

Gene Structure 812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00326970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGGAAGCGATTGGGTGGTGACCAGATGCGATACATGTGGATTTTCTTCGATCACAACCTTCGACCTCAAGAAGGGAACAGTTGCCGACTCCCGAGTTGGACGGTTTCTTGGCGAGAGCAACTTAGGGCACGGAGCTCTACCACAAAGTCCAAGTGGTAACTTTCTTGGACCAAATGACGTTCCAATGAGGCCTTTAGGTCCTCTCGCCTCTGGTAGATTTGATGATCTGCTTTATTATCAAGATGGCAGTTCCAAGAAGAGCCGCCTTAGTCCACCCGGTGTCGGGGGCATAGTTGGAAGTCCTAGGCCTCCCGATGATGATTACATCCGGCGTGGCATTATTGCCAAGGGTGGAACACCCATTTGTCGTGCTCGTTGTGTCCCTGTAGGCAAAGGGATAAGAATTGAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0000785 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0019219 GO:0019222 GO:0022414 GO:0031047 GO:0031048 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048229 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 SPOC

Protein Analysis

138

Amino Acids

14.62

Weight (kDa)

9.26

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43410 AT2G43410 AT2G43410 AT2G43410 AT2G43410 AT2G43410
fragaria_vesca	FvH4_7g04880 FvH4_7g04880 FvH4_7g04880
malus_domestica	MD04G1045000.v1.1 MD13G1271200.v1.1
prunus_persica	Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1
pyrus_communis	pycom04g03870 pycom13g27540
rosa_chinensis	RchiOBHm_Chr1g0330861
rosa_laevigata	RLG00000029768 RLG00000029781
rosa_multiflora	Rmu_sc0000236.1_g000011 Rmu_sc0000236.1_g000038 Rmu_sc0002899.1_g000006 Rmu_sc0005689.1_g000004 Rmu_sc0005689.1_g000022
rosa_roxburghii	Rroxscaffold_4G00319690 Rroxscaffold_4G00326970 Rroxscaffold_5G00351180
rosa_rugosa	Rorug01G0090800.1 Rorug01G0090900
rosa_samantha	Rh1AG112500 Rh1BG086500 Rh1CG109500 Rh1CG109600 Rh1DG117900
rosa_wichuraiana	Rw1G009100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	265
AdeI	CACNNNGTG	1 cut(s)	281
AfiI	CCNNNNNNNGG	3 cut(s)	73, 284, 285
AflIII	ACRYGT	1 cut(s)	35
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
Alw21I	GWGCWC	2 cut(s)	139, 376
Ama87I	CYCGRG	1 cut(s)	93
AoxI	GGCC	2 cut(s)	191, 308
AspA2I	CCTAGG	1 cut(s)	305
AspS9I	GGNCC	2 cut(s)	170, 200
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	1 cut(s)	31
AvaI	CYCGRG	1 cut(s)	93
AvaII	GGWCC	2 cut(s)	170, 200
AvrII	CCTAGG	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	132
BanII	GRGCYC	1 cut(s)	139
Bbv12I	GWGCWC	2 cut(s)	139, 376
BccI	CCATC	1 cut(s)	239
BcnI	CCSGG	1 cut(s)	279
BfaI	CTAG	1 cut(s)	306
BfmI	CTRYAG	1 cut(s)	387
BisI	GCNGC	1 cut(s)	265
BlnI	CCTAGG	1 cut(s)	305
BlsI	GCNGC	1 cut(s)	266
Bme1390I	CCNGG	1 cut(s)	279
Bme18I	GGWCC	2 cut(s)	170, 200
BmeT110I	CYCGRG	1 cut(s)	93
BmgT120I	GGNCC	2 cut(s)	170, 200
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	305, 348
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 284, 285
BseDI	CCNNGG	2 cut(s)	305, 348
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	3 cut(s)	73, 284, 285
BseSI	GKGCMC	1 cut(s)	132
BshFI	GGCC	2 cut(s)	193, 310
BsiHKAI	GWGCWC	2 cut(s)	139, 376
BsiHKCI	CYCGRG	1 cut(s)	93
BsiSI	CCGG	2 cut(s)	279, 331
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	3 cut(s)	73, 284, 285
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	2 cut(s)	193, 310
BsoBI	CYCGRG	1 cut(s)	93
Bsp1286I	GDGCHC	3 cut(s)	132, 139, 376
Bsp143I	GATC	2 cut(s)	51, 226
BspACI	CCGC	1 cut(s)	265
BspANI	GGCC	2 cut(s)	193, 310
BspQI	GCTCTTC	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	305, 348
BssMI	GATC	2 cut(s)	51, 226
BssT1I	CCWWGG	2 cut(s)	305, 348
Bst4CI	ACNGT	2 cut(s)	82, 105
Bst6I	CTCTTC	1 cut(s)	254
BstDEI	CTNAG	2 cut(s)	124, 269
BstEII	GGTNACC	1 cut(s)	19
BstENI	CCTNNNNNAGG	1 cut(s)	71
BstF5I	GGATG	1 cut(s)	327
BstKTI	GATC	2 cut(s)	54, 229
BstMBI	GATC	2 cut(s)	51, 226
BstNSI	RCATGY	1 cut(s)	39
BstPI	GGTNACC	1 cut(s)	19
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	387
BstSLI	GKGCMC	1 cut(s)	132
BsuRI	GGCC	2 cut(s)	193, 310
BtsCI	GGATG	1 cut(s)	327
Cfr13I	GGNCC	2 cut(s)	170, 200
CviAII	CATG	1 cut(s)	36
CviJI	RGCY	4 cut(s)	137, 193, 264, 310
CviKI_1	RGCY	4 cut(s)	137, 193, 264, 310
DdeI	CTNAG	2 cut(s)	124, 269
DpnI	GATC	2 cut(s)	53, 228
DpnII	GATC	2 cut(s)	51, 226
DraIII	CACNNNGTG	1 cut(s)	281
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Ecl136II	GAGCTC	1 cut(s)	137
Eco130I	CCWWGG	2 cut(s)	305, 348
Eco147I	AGGCCT	2 cut(s)	193, 310
Eco24I	GRGCYC	1 cut(s)	139
Eco47I	GGWCC	2 cut(s)	170, 200
Eco53kI	GAGCTC	1 cut(s)	137
Eco88I	CYCGRG	1 cut(s)	93
Eco91I	GGTNACC	1 cut(s)	19
EcoICRI	GAGCTC	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	200
EcoO65I	GGTNACC	1 cut(s)	19
EcoT14I	CCWWGG	2 cut(s)	305, 348
EcoT38I	GRGCYC	1 cut(s)	139
ErhI	CCWWGG	2 cut(s)	305, 348
FaeI	CATG	1 cut(s)	39
FaiI	YATR	2 cut(s)	37, 293
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	1 cut(s)	35
Fnu4HI	GCNGC	1 cut(s)	265
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	1 cut(s)	139
Fsp4HI	GCNGC	1 cut(s)	265
FspBI	CTAG	1 cut(s)	306
GluI	GCNGC	1 cut(s)	265
HaeIII	GGCC	2 cut(s)	193, 310
HapII	CCGG	2 cut(s)	279, 331
Hin1II	CATG	1 cut(s)	39
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	2 cut(s)	279, 331
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188III	TCNNGA	4 cut(s)	70, 93, 242, 314
Hpy8I	GTNNAC	1 cut(s)	275
HpyAV	CCTTC	2 cut(s)	67, 70
HpyCH4III	ACNGT	2 cut(s)	82, 105
HpyCH4IV	ACGT	1 cut(s)	180
HpyF3I	CTNAG	2 cut(s)	124, 269
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	51, 226
LguI	GCTCTTC	1 cut(s)	254
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	5 cut(s)	37, 198, 292, 344, 399
LweI	GCATC	1 cut(s)	17
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	2 cut(s)	19, 158
MalI	GATC	2 cut(s)	53, 228
MboI	GATC	2 cut(s)	51, 226
MboII	GAAGA	2 cut(s)	39, 271
MhlI	GDGCHC	3 cut(s)	132, 139, 376
MluCI	AATT	1 cut(s)	405
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	2 cut(s)	79, 277
MnlI	CCTC	5 cut(s)	77, 183, 213, 220, 321
MspI	CCGG	2 cut(s)	279, 331
MspR9I	CCNGG	1 cut(s)	279
NciI	CCSGG	1 cut(s)	279
NdeII	GATC	2 cut(s)	51, 226
NlaIII	CATG	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	19
NspI	RCATGY	1 cut(s)	39
PceI	AGGCCT	2 cut(s)	193, 310
PciI	ACATGT	1 cut(s)	35
PciSI	GCTCTTC	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	266
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PpuMI	RGGWCCY	1 cut(s)	200
PscI	ACATGT	1 cut(s)	35
Psp124BI	GAGCTC	1 cut(s)	139
Psp5II	RGGWCCY	1 cut(s)	200
PspEI	GGTNACC	1 cut(s)	19
PspPI	GGNCC	2 cut(s)	170, 200
PspPPI	RGGWCCY	1 cut(s)	200
SacI	GAGCTC	1 cut(s)	139
SapI	GCTCTTC	1 cut(s)	254
SatI	GCNGC	1 cut(s)	265
Sau3AI	GATC	2 cut(s)	51, 226
Sau96I	GGNCC	2 cut(s)	170, 200
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	3 cut(s)	132, 139, 376
SetI	ASST	5 cut(s)	62, 69, 139, 183, 202
SfaNI	GCATC	1 cut(s)	17
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	2 cut(s)	170, 200
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	1 cut(s)	405
SseBI	AGGCCT	2 cut(s)	193, 310
SsiI	CCGC	1 cut(s)	265
SspMI	CTAG	1 cut(s)	306
SstI	GAGCTC	1 cut(s)	139
StuI	AGGCCT	2 cut(s)	193, 310
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	2 cut(s)	305, 348
TaaI	ACNGT	2 cut(s)	82, 105
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	2 cut(s)	50, 63
TasI	AATT	1 cut(s)	405
TauI	GCSGC	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	19
TspGWI	ACGGA	1 cut(s)	147
VpaK11BI	GGWCC	2 cut(s)	170, 200
XagI	CCTNNNNNAGG	1 cut(s)	71
XceI	RCATGY	1 cut(s)	39
XmaJI	CCTAGG	1 cut(s)	305
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.