Rh1CG109600

Flowering time control protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002760
Physical Location & Seq
Forward (+)
22051203 .. 22052605
1403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG109600.1

Sequence Viewer

Length: 684 bp
ATGCTCCACAATGCCATGATTTTTTTTGGTGAGATTGAGAGGATTAAAAGTTTTCCTTCAAGGCACTACTCATTTGTCGAATTCAGGAGTGTAGACGAAGCTCGGCGTGCCAAGGAGGGTTTACAAGGCAGGCTTTTCAATGATCCTCGGATCACAATTATGTTTTCAACCAGTGATCTACCAACAGCTGGCCCATACCAACCGGGAGGAGGCGAATGGTCTACTCCTAGACCTGATATGCAACTATTTAATGAACATTCCATGAGCAACTTAGGGCCTAGAGCTCTACCACAAAGTCCAAGTGGAAATTTTCTTGGACCAAATGACGTTCTAATGAGGCCTTTAGGTCCTCTGCCTCCTGGTAGATTTGATGATCTGCTTTATTATCAAGATGGCAGTTCCAAGAAGAGCCGCCTTAGTCCACCTGGTGTCAGGGGCATAGTTGGAGGTCCTAGGCCTCCTGATGATGATTACATCTGGCGTGGCATTATTGCCAAGGGTCGAACACCCATTTGTCGTGCTAGTTGTGTCCCTGTAGGCAAAGGGATAAGAATTGAGATTTCTGAAATTGTTAATTGTTCAGCTAGAACTGGATTGGATATGCTGACTAAACACTTTGCTGAGGCCATTGCATTCGACATTATCAACCATCACATCTACCCATTGAATCTTCACAATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0000785 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0019219 GO:0019222 GO:0022414 GO:0031047 GO:0031048 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048229 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1 SPOC

Protein Analysis

227

Amino Acids

25.28

Weight (kDa)

8.82

Isoelectric Point (pI)

49.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 6 - 51 7.7e-07 RNA recognition motif
SPOC PF07744 154 - 209 1.4e-06 SPOC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 188
AccI GTMKAC 2 cut(s) 93, 221
AciI CCGC 1 cut(s) 412
AclWI GGATC 2 cut(s) 137, 158
AcsI RAATTY 2 cut(s) 80, 307
AdeI CACNNNGTG 1 cut(s) 428
AfiI CCNNNNNNNGG 2 cut(s) 188, 209
AgsI TTSAA 4 cut(s) 60, 139, 168, 667
AjnI CCWGG 2 cut(s) 358, 424
AluBI AGCT 4 cut(s) 101, 188, 284, 584
AluI AGCT 4 cut(s) 101, 188, 284, 584
Alw21I GWGCWC 1 cut(s) 286
AlwI GGATC 2 cut(s) 137, 158
AoxI GGCC 5 cut(s) 190, 275, 338, 455, 624
ApoI RAATTY 2 cut(s) 80, 307
AspA2I CCTAGG 1 cut(s) 452
AspS9I GGNCC 5 cut(s) 191, 275, 317, 347, 449
AsuC2I CCSGG 1 cut(s) 204
AsuHPI GGTGA 1 cut(s) 41
AvaII GGWCC 3 cut(s) 317, 347, 449
AvrII CCTAGG 1 cut(s) 452
BanII GRGCYC 1 cut(s) 286
Bbv12I GWGCWC 1 cut(s) 286
BbvCI CCTCAGC 1 cut(s) 621
BccI CCATC 2 cut(s) 386, 657
BciT130I CCWGG 2 cut(s) 360, 426
BcnI CCSGG 1 cut(s) 204
BfaI CTAG 5 cut(s) 228, 279, 453, 522, 585
BfmI CTRYAG 1 cut(s) 534
BisI GCNGC 1 cut(s) 412
BlnI CCTAGG 1 cut(s) 452
BlsI GCNGC 1 cut(s) 413
Bme1390I CCNGG 3 cut(s) 204, 360, 426
Bme18I GGWCC 3 cut(s) 317, 347, 449
BmgT120I GGNCC 5 cut(s) 191, 275, 317, 347, 449
BmrFI CCNGG 3 cut(s) 204, 360, 426
Bpu10I CCTNAGC 1 cut(s) 621
BpuMI CCSGG 1 cut(s) 204
BsaJI CCNNGG 4 cut(s) 111, 146, 452, 495
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 209
Bse1I ACTGG 2 cut(s) 171, 595
Bse3DI GCAATG 1 cut(s) 627
BseBI CCWGG 2 cut(s) 360, 426
BseDI CCNNGG 4 cut(s) 111, 146, 452, 495
BseLI CCNNNNNNNGG 2 cut(s) 188, 209
BseMI GCAATG 1 cut(s) 627
BseMII CTCAG 1 cut(s) 612
BseNI ACTGG 2 cut(s) 171, 595
BseRI GAGGAG 1 cut(s) 222
BshFI GGCC 5 cut(s) 192, 277, 340, 457, 626
BsiHKAI GWGCWC 1 cut(s) 286
BsiSI CCGG 1 cut(s) 203
BslFI GGGAC 1 cut(s) 515
BslI CCNNNNNNNGG 2 cut(s) 188, 209
BsmFI GGGAC 1 cut(s) 515
BsmI GAATGC 1 cut(s) 632
BsnI GGCC 5 cut(s) 192, 277, 340, 457, 626
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 4 cut(s) 142, 150, 175, 373
BspACI CCGC 1 cut(s) 412
BspANI GGCC 5 cut(s) 192, 277, 340, 457, 626
BspCNI CTCAG 1 cut(s) 613
BspPI GGATC 2 cut(s) 137, 158
BspQI GCTCTTC 1 cut(s) 401
BsrDI GCAATG 1 cut(s) 627
BsrI ACTGG 2 cut(s) 171, 595
BssECI CCNNGG 4 cut(s) 111, 146, 452, 495
BssMI GATC 4 cut(s) 142, 150, 175, 373
BssT1I CCWWGG 3 cut(s) 111, 452, 495
Bst2UI CCWGG 2 cut(s) 360, 426
Bst6I CTCTTC 1 cut(s) 401
BstC8I GCNNGC 3 cut(s) 108, 131, 190
BstDEI CTNAG 3 cut(s) 271, 416, 621
BstKTI GATC 4 cut(s) 145, 153, 178, 376
BstMBI GATC 4 cut(s) 142, 150, 175, 373
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstNI CCWGG 2 cut(s) 360, 426
BstSCI CCNGG 3 cut(s) 202, 358, 424
BstSFI CTRYAG 1 cut(s) 534
BsuRI GGCC 5 cut(s) 192, 277, 340, 457, 626
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 3 cut(s) 108, 131, 190
Cfr13I GGNCC 5 cut(s) 191, 275, 317, 347, 449
CsiI ACCWGGT 1 cut(s) 424
CviAII CATG 2 cut(s) 16, 262
DdeI CTNAG 3 cut(s) 271, 416, 621
DpnI GATC 4 cut(s) 144, 152, 177, 375
DpnII GATC 4 cut(s) 142, 150, 175, 373
DraIII CACNNNGTG 1 cut(s) 428
Eam1104I CTCTTC 1 cut(s) 401
EarI CTCTTC 1 cut(s) 401
Ecl136II GAGCTC 1 cut(s) 284
Eco130I CCWWGG 3 cut(s) 111, 452, 495
Eco147I AGGCCT 2 cut(s) 340, 457
Eco24I GRGCYC 1 cut(s) 286
Eco47I GGWCC 3 cut(s) 317, 347, 449
Eco53kI GAGCTC 1 cut(s) 284
EcoICRI GAGCTC 1 cut(s) 284
EcoO109I RGGNCCY 3 cut(s) 275, 347, 449
EcoRI GAATTC 1 cut(s) 80
EcoRII CCWGG 2 cut(s) 358, 424
EcoT14I CCWWGG 3 cut(s) 111, 452, 495
EcoT38I GRGCYC 1 cut(s) 286
ErhI CCWWGG 3 cut(s) 111, 452, 495
FaeI CATG 2 cut(s) 19, 265
FaiI YATR 9 cut(s) 17, 161, 196, 239, 263, 440, 602, 680, 682
FalI AAGNNNNNCTT 4 cut(s) 40, 72, 117, 149
FaqI GGGAC 1 cut(s) 515
FatI CATG 2 cut(s) 15, 261
FblI GTMKAC 2 cut(s) 93, 221
Fnu4HI GCNGC 1 cut(s) 412
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 1 cut(s) 412
FspBI CTAG 5 cut(s) 228, 279, 453, 522, 585
GluI GCNGC 1 cut(s) 412
HaeIII GGCC 5 cut(s) 192, 277, 340, 457, 626
HapII CCGG 1 cut(s) 203
Hin1II CATG 2 cut(s) 19, 265
HinfI GANTC 1 cut(s) 667
HpaII CCGG 1 cut(s) 203
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 4 cut(s) 94, 122, 222, 422
Hpy188I TCNGA 2 cut(s) 150, 565
Hpy188III TCNNGA 3 cut(s) 85, 389, 461
Hpy8I GTNNAC 4 cut(s) 94, 122, 222, 422
HpyAV CCTTC 1 cut(s) 66
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 2 cut(s) 241, 632
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpyF3I CTNAG 3 cut(s) 271, 416, 621
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 2 cut(s) 19, 265
Kzo9I GATC 4 cut(s) 142, 150, 175, 373
LguI GCTCTTC 1 cut(s) 401
LmnI GCTCC 1 cut(s) 9
MabI ACCWGGT 1 cut(s) 424
MaeI CTAG 5 cut(s) 228, 279, 453, 522, 585
MaeII ACGT 1 cut(s) 327
MalI GATC 4 cut(s) 144, 152, 177, 375
MboI GATC 4 cut(s) 142, 150, 175, 373
MboII GAAGA 2 cut(s) 418, 662
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 6 cut(s) 80, 156, 307, 552, 567, 574
MmeI TCCRAC 1 cut(s) 424
MseI TTAA 3 cut(s) 45, 249, 573
MslI CAYNNNNRTG 1 cut(s) 158
MspA1I CMGCKG 1 cut(s) 188
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 3 cut(s) 204, 360, 426
Mva1269I GAATGC 1 cut(s) 632
MvaI CCWGG 2 cut(s) 360, 426
MwoI GCNNNNNNNGC 1 cut(s) 107
NciI CCSGG 1 cut(s) 204
NdeII GATC 4 cut(s) 142, 150, 175, 373
NlaIII CATG 2 cut(s) 19, 265
NmeAIII GCCGAG 1 cut(s) 82
PceI AGGCCT 2 cut(s) 340, 457
PciSI GCTCTTC 1 cut(s) 401
PctI GAATGC 1 cut(s) 632
PfeI GAWTC 1 cut(s) 667
PflMI CCANNNNNTGG 1 cut(s) 188
PkrI GCNGC 1 cut(s) 413
PpuMI RGGWCCY 2 cut(s) 347, 449
Psp124BI GAGCTC 1 cut(s) 286
Psp5II RGGWCCY 2 cut(s) 347, 449
Psp6I CCWGG 2 cut(s) 358, 424
PspGI CCWGG 2 cut(s) 358, 424
PspPI GGNCC 5 cut(s) 191, 275, 317, 347, 449
PspPPI RGGWCCY 2 cut(s) 347, 449
PvuII CAGCTG 1 cut(s) 188
RseI CAYNNNNRTG 1 cut(s) 158
SacI GAGCTC 1 cut(s) 286
SapI GCTCTTC 1 cut(s) 401
SaqAI TTAA 3 cut(s) 45, 249, 573
SatI GCNGC 1 cut(s) 412
Sau3AI GATC 4 cut(s) 142, 150, 175, 373
Sau96I GGNCC 5 cut(s) 191, 275, 317, 347, 449
ScrFI CCNGG 3 cut(s) 204, 360, 426
SduI GDGCHC 1 cut(s) 286
SetI ASST 9 cut(s) 103, 190, 235, 286, 330, 349, 427, 451, 586
SexAI ACCWGGT 1 cut(s) 424
SfcI CTRYAG 1 cut(s) 534
SinI GGWCC 3 cut(s) 317, 347, 449
SmiMI CAYNNNNRTG 1 cut(s) 158
Sse9I AATT 6 cut(s) 80, 156, 307, 552, 567, 574
SseBI AGGCCT 2 cut(s) 340, 457
SsiI CCGC 1 cut(s) 412
SspMI CTAG 5 cut(s) 228, 279, 453, 522, 585
SstI GAGCTC 1 cut(s) 286
StuI AGGCCT 2 cut(s) 340, 457
StyD4I CCNGG 3 cut(s) 202, 358, 424
StyI CCWWGG 3 cut(s) 111, 452, 495
TaiI ACGT 1 cut(s) 330
TaqI TCGA 3 cut(s) 78, 502, 636
TasI AATT 6 cut(s) 80, 156, 307, 552, 567, 574
TauI GCSGC 1 cut(s) 414
TfiI GAWTC 1 cut(s) 667
Tru1I TTAA 3 cut(s) 45, 249, 573
Tru9I TTAA 3 cut(s) 45, 249, 573
TscAI CASTG 1 cut(s) 178
TspDTI ATGAA 1 cut(s) 267
TspRI CASTG 1 cut(s) 178
Van91I CCANNNNNTGG 1 cut(s) 188
VpaK11BI GGWCC 3 cut(s) 317, 347, 449
XapI RAATTY 2 cut(s) 80, 307
XmaJI CCTAGG 1 cut(s) 452
XmiI GTMKAC 2 cut(s) 93, 221
XspI CTAG 5 cut(s) 228, 279, 453, 522, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.