Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002899.1

Orthogroup ID

OG0002760

Physical Location & Seq

Genomic Coordinates Forward (+)

31806 .. 37500

Gene Structure 5695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002899.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1713 bp

atggcgccggcggcggcgaaaccggggaagcaaggcggcggggacgaaggaagagcggcgtcgaacaatctgtgggttgggaacatcgggagggacgtcaccgactcggatctgtatgacctgttctcccaatacggtgcgttggacggcgtgacgtcatactcgacgcgcagctacgcgttcgtgttgttcaaacgcaaggaggaggccgcggcggccaaggaggctctgcaaggcactcctgtgcggggacaacccattaagatcgaatttgctcgaccggcaaaaccatccaagaagctatgggtaggtggaattagcccatctgtgtctaaggaagaattagaagaagaatttctcaagtttggaaaattggaggacttcaagttccttagagaccggaatactgcttgtcttgaatattgtagattggaggatgcttctgaagcaatgagaaatatgaatgggaagcgattgggtggtgaccagatgcagatacatgtggattttcttcgatcacaaccttcgaccgcaagaagggaacagttgcctgactaccgagatggacagtttcttggcagaggtatcatggggcctgctgctgattctcattctggtcataaaagaaaacagccttattctcaaatttctggccaacccagtagctcagttctgtgggttgggtaccctccttctgtccaaattgatgaacaaatgctccacaatgccatgattttgtttggtgagattgagaggattaaaagttttccttcaaggcactactcatttgtcgaattcaggagcgtagacgaagctcggcgtgccaaggagggtttgcaaggcaggcttttcaatgatcctcggatcacaattatgttttcaaccagtgatctgccaccagctggcccataccaaccaggaggaggcaaatggtctactcctagacctgatatgcatctatttaatgaacattcaatgagcaacttagggcctggagctctaccacaaagtccaagtggtaactttcttggaccaaatgacgttccaatgaggcctttaggtcctctgcctcctggtagatttgatgatctgctttattatcaagatggcagttccaagaagagccgccttagtccacctggtgtcaggggcatagttggaggtcctaggcctcctgatgatgattacatctggcgtggcattattgccaagggtggaacacccatttgtcgtgctcgttgtgtccctgtaggcaaagggataagaattgagattcctgaaattgttaattgttcagctagaactggattggatatgctgacaaaacactttgctgaggccattgcattcgacattatgttcttcttgccagacagtgaagatgattttgcttcctacactgaattccttcattatctaggtgcgaaaaaccgtgctggtgttgcaaagtttgatgatgggatgacattgtttttagtacctccttcagacttcttgaagactgttttgaaagttgctggccctgaacgtctgtatggtgtggttctcaagtttccacaacaagttcctagtgctgcttccattcagcaaccatcacatctacccattgaatcttcacaatatatagataaacagcagattcctcctatacatgctgagtataccattccatcgaaggatgaacatgtcagtaacccaagattattcctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0000785 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0019219 GO:0019222 GO:0022414 GO:0031047 GO:0031048 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048229 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 SPOC

Protein Analysis

570

Amino Acids

63.07

Weight (kDa)

8.1

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43410 AT2G43410 AT2G43410 AT2G43410 AT2G43410 AT2G43410
fragaria_vesca	FvH4_7g04880 FvH4_7g04880 FvH4_7g04880
malus_domestica	MD04G1045000.v1.1 MD13G1271200.v1.1
prunus_persica	Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1 Prupe.1G197900_v2.0.a1
pyrus_communis	pycom04g03870 pycom13g27540
rosa_chinensis	RchiOBHm_Chr1g0330861
rosa_laevigata	RLG00000029768 RLG00000029781
rosa_multiflora	Rmu_sc0000236.1_g000011 Rmu_sc0000236.1_g000038 Rmu_sc0002899.1_g000006 Rmu_sc0005689.1_g000004 Rmu_sc0005689.1_g000022
rosa_roxburghii	Rroxscaffold_4G00319690 Rroxscaffold_4G00326970 Rroxscaffold_5G00351180
rosa_rugosa	Rorug01G0090800.1 Rorug01G0090900
rosa_samantha	Rh1AG112500 Rh1BG086500 Rh1CG109500 Rh1CG109600 Rh1DG117900
rosa_wichuraiana	Rw1G009100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	99, 158
Acc65I	GGTACC	1 cut(s)	684
AccB1I	GGYRCC	2 cut(s)	4, 684
AccB7I	CCANNNNNTGG	1 cut(s)	902
AccBSI	CCGCTC	1 cut(s)	56
AccI	GTMKAC	3 cut(s)	807, 935, 1661
AccII	CGCG	3 cut(s)	169, 179, 212
AclWI	GGATC	3 cut(s)	117, 851, 872
AcoI	YGGCCR	2 cut(s)	216, 652
AcsI	RAATTY	5 cut(s)	269, 353, 645, 794, 1403
AcuI	CTGAAG	2 cut(s)	465, 1470
AcyI	GRCGYC	4 cut(s)	5, 59, 96, 155
AdeI	CACNNNGTG	1 cut(s)	1142
AfaI	GTAC	2 cut(s)	686, 1479
AfiI	CCNNNNNNNGG	4 cut(s)	248, 537, 902, 923
AflIII	ACRYGT	3 cut(s)	177, 499, 1684
AjnI	CCWGG	4 cut(s)	916, 991, 1072, 1138
AleI	CACNNNNGTG	1 cut(s)	242
AloI	GAACNNNNNNTCC	4 cut(s)	371, 403, 702, 734
AluBI	AGCT	7 cut(s)	174, 301, 666, 815, 902, 998, 1298
AluI	AGCT	7 cut(s)	174, 301, 666, 815, 902, 998, 1298
Alw21I	GWGCWC	2 cut(s)	1000, 1237
Alw26I	GTCTC	1 cut(s)	390
AlwI	GGATC	3 cut(s)	117, 851, 872
ApeKI	GCWGC	3 cut(s)	171, 599, 1574
ApoI	RAATTY	5 cut(s)	269, 353, 645, 794, 1403
Asp700I	GAANNNNTTC	2 cut(s)	354, 1407
Asp718I	GGTACC	1 cut(s)	684
AspA2I	CCTAGG	1 cut(s)	1166
AspLEI	GCGC	2 cut(s)	7, 171
AspS9I	GGNCC	7 cut(s)	593, 905, 989, 1031, 1061, 1163, 1520
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	3 cut(s)	91, 494, 755
AvaII	GGWCC	3 cut(s)	1031, 1061, 1163
AvrII	CCTAGG	1 cut(s)	1166
BalI	TGGCCA	1 cut(s)	654
BanI	GGYRCC	2 cut(s)	4, 684
BanII	GRGCYC	1 cut(s)	1000
BbsI	GAAGAC	1 cut(s)	1505
Bbv12I	GWGCWC	2 cut(s)	1000, 1237
BbvCI	CCTCAGC	1 cut(s)	1335
BbvI	GCAGC	3 cut(s)	183, 586, 1561
BccI	CCATC	7 cut(s)	298, 331, 557, 1100, 1451, 1600, 1678
BceAI	ACGGC	1 cut(s)	163
BciT130I	CCWGG	4 cut(s)	918, 993, 1074, 1140
BcnI	CCSGG	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	390
BfaI	CTAG	5 cut(s)	942, 1167, 1299, 1418, 1569
BfmI	CTRYAG	1 cut(s)	1248
BfoI	RGCGCY	1 cut(s)	8
BglI	GCCNNNNNGGC	2 cut(s)	215, 224
BlnI	CCTAGG	1 cut(s)	1166
Bme1390I	CCNGG	5 cut(s)	24, 918, 993, 1074, 1140
Bme18I	GGWCC	3 cut(s)	1031, 1061, 1163
BmgT120I	GGNCC	7 cut(s)	593, 905, 989, 1031, 1061, 1163, 1520
BmiI	GGNNCC	3 cut(s)	6, 594, 686
BmrFI	CCNGG	5 cut(s)	24, 918, 993, 1074, 1140
BmrI	ACTGGG	1 cut(s)	654
BmsI	GCATC	3 cut(s)	427, 480, 964
BmuI	ACTGGG	1 cut(s)	654
BpiI	GAAGAC	1 cut(s)	1505
BpmI	CTGGAG	1 cut(s)	1014
Bpu10I	CCTNAGC	1 cut(s)	1335
BpuEI	CTTGAG	2 cut(s)	344, 1532
BpuMI	CCSGG	1 cut(s)	24
BsaBI	GATNNNNATC	1 cut(s)	954
BsaHI	GRCGYC	4 cut(s)	5, 59, 96, 155
BsaI	GGTCTC	1 cut(s)	390
BsaJI	CCNNGG	7 cut(s)	23, 210, 219, 825, 860, 1166, 1209
BsaWI	WCCGGW	1 cut(s)	399
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 140, 702, 732
Bsc4I	CCNNNNNNNGG	4 cut(s)	248, 537, 902, 923
Bse118I	RCCGGY	2 cut(s)	7, 280
Bse1I	ACTGG	3 cut(s)	660, 885, 1309
Bse3DI	GCAATG	2 cut(s)	456, 1341
Bse8I	GATNNNNATC	1 cut(s)	954
BseBI	CCWGG	4 cut(s)	918, 993, 1074, 1140
BseDI	CCNNGG	7 cut(s)	23, 210, 219, 825, 860, 1166, 1209
BseGI	GGATG	4 cut(s)	290, 442, 1467, 1684
BseJI	GATNNNNATC	1 cut(s)	954
BseLI	CCNNNNNNNGG	4 cut(s)	248, 537, 902, 923
BseMI	GCAATG	2 cut(s)	456, 1341
BseMII	CTCAG	3 cut(s)	681, 1326, 1647
BseNI	ACTGG	3 cut(s)	660, 885, 1309
BseRI	GAGGAG	2 cut(s)	218, 936
BseXI	GCAGC	3 cut(s)	183, 586, 1561
Bsh1236I	CGCG	3 cut(s)	169, 179, 212
Bsh1285I	CGRYCG	2 cut(s)	281, 531
BshNI	GGYRCC	2 cut(s)	4, 684
BsiEI	CGRYCG	2 cut(s)	281, 531
BsiHKAI	GWGCWC	2 cut(s)	1000, 1237
BsiSI	CCGG	4 cut(s)	8, 23, 281, 400
BslFI	GGGAC	4 cut(s)	56, 107, 264, 1229
BslI	CCNNNNNNNGG	4 cut(s)	248, 537, 902, 923
BsmAI	GTCTC	1 cut(s)	390
BsmFI	GGGAC	4 cut(s)	56, 107, 264, 1229
BsmI	GAATGC	1 cut(s)	1346
Bso31I	GGTCTC	1 cut(s)	390
Bsp1286I	GDGCHC	2 cut(s)	1000, 1237
Bsp143I	GATC	7 cut(s)	109, 264, 515, 856, 864, 889, 1087
BspCNI	CTCAG	3 cut(s)	680, 1327, 1648
BspFNI	CGCG	3 cut(s)	169, 179, 212
BspLI	GGNNCC	3 cut(s)	6, 594, 686
BspPI	GGATC	3 cut(s)	117, 851, 872
BspQI	GCTCTTC	2 cut(s)	46, 1115
BspT107I	GGYRCC	2 cut(s)	4, 684
BspTNI	GGTCTC	1 cut(s)	390
BsrBI	CCGCTC	1 cut(s)	56
BsrDI	GCAATG	2 cut(s)	456, 1341
BsrFI	RCCGGY	2 cut(s)	7, 280
BsrI	ACTGG	3 cut(s)	660, 885, 1309
BssAI	RCCGGY	2 cut(s)	7, 280
BssECI	CCNNGG	7 cut(s)	23, 210, 219, 825, 860, 1166, 1209
BssMI	GATC	7 cut(s)	109, 264, 515, 856, 864, 889, 1087
BssNAI	GTATAC	1 cut(s)	1662
BssNI	GRCGYC	4 cut(s)	5, 59, 96, 155
BssT1I	CCWWGG	4 cut(s)	219, 825, 1166, 1209
Bst1107I	GTATAC	1 cut(s)	1662
Bst2UI	CCWGG	4 cut(s)	918, 993, 1074, 1140
Bst4CI	ACNGT	6 cut(s)	137, 546, 570, 1376, 1433, 1504
Bst6I	CTCTTC	2 cut(s)	46, 1115
BstACI	GRCGYC	4 cut(s)	5, 59, 96, 155
BstC8I	GCNNGC	6 cut(s)	9, 597, 822, 845, 904, 1519
BstDEI	CTNAG	7 cut(s)	333, 392, 667, 985, 1130, 1335, 1656
BstDSI	CCRYGG	1 cut(s)	210
BstEII	GGTNACC	1 cut(s)	482
BstF5I	GGATG	4 cut(s)	290, 442, 1467, 1684
BstFNI	CGCG	3 cut(s)	169, 179, 212
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 171
BstKTI	GATC	7 cut(s)	112, 267, 518, 859, 867, 892, 1090
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	7 cut(s)	109, 264, 515, 856, 864, 889, 1087
BstMCI	CGRYCG	2 cut(s)	281, 531
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 215, 224, 281, 446, 821, 844, 1442
BstNI	CCWGG	4 cut(s)	918, 993, 1074, 1140
BstNSI	RCATGY	3 cut(s)	503, 1655, 1688
BstPI	GGTNACC	1 cut(s)	482
BstSCI	CCNGG	5 cut(s)	22, 916, 991, 1072, 1138
BstSFI	CTRYAG	1 cut(s)	1248
BstUI	CGCG	3 cut(s)	169, 179, 212
BstV1I	GCAGC	3 cut(s)	183, 586, 1561
BstV2I	GAAGAC	1 cut(s)	1505
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BstZ17I	GTATAC	1 cut(s)	1662
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	4 cut(s)	290, 442, 1467, 1684
BtsIMutI	CAGTG	3 cut(s)	892, 1381, 1398
Cac8I	GCNNGC	6 cut(s)	9, 597, 822, 845, 904, 1519
CfoI	GCGC	2 cut(s)	7, 171
Cfr10I	RCCGGY	2 cut(s)	7, 280
Cfr13I	GGNCC	7 cut(s)	593, 905, 989, 1031, 1061, 1163, 1520
Cfr42I	CCGCGG	1 cut(s)	213
CseI	GACGC	2 cut(s)	48, 175
CsiI	ACCWGGT	1 cut(s)	1138
Csp6I	GTAC	2 cut(s)	685, 1478
CviAII	CATG	5 cut(s)	500, 589, 730, 1652, 1685
CviQI	GTAC	2 cut(s)	685, 1478
DdeI	CTNAG	7 cut(s)	333, 392, 667, 985, 1130, 1335, 1656
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	7 cut(s)	111, 266, 517, 858, 866, 891, 1089
DpnII	GATC	7 cut(s)	109, 264, 515, 856, 864, 889, 1087
DraIII	CACNNNGTG	1 cut(s)	1142
EaeI	YGGCCR	2 cut(s)	216, 652
Eam1104I	CTCTTC	2 cut(s)	46, 1115
EarI	CTCTTC	2 cut(s)	46, 1115
Ecl136II	GAGCTC	1 cut(s)	998
Eco130I	CCWWGG	4 cut(s)	219, 825, 1166, 1209
Eco147I	AGGCCT	2 cut(s)	1054, 1171
Eco24I	GRGCYC	1 cut(s)	1000
Eco31I	GGTCTC	1 cut(s)	390
Eco47I	GGWCC	3 cut(s)	1031, 1061, 1163
Eco53kI	GAGCTC	1 cut(s)	998
Eco57I	CTGAAG	2 cut(s)	465, 1470
Eco91I	GGTNACC	1 cut(s)	482
EcoICRI	GAGCTC	1 cut(s)	998
EcoO109I	RGGNCCY	4 cut(s)	593, 989, 1061, 1163
EcoO65I	GGTNACC	1 cut(s)	482
EcoRI	GAATTC	2 cut(s)	794, 1403
EcoRII	CCWGG	4 cut(s)	916, 991, 1072, 1138
EcoT14I	CCWWGG	4 cut(s)	219, 825, 1166, 1209
EcoT22I	ATGCAT	1 cut(s)	957
EcoT38I	GRGCYC	1 cut(s)	1000
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	4 cut(s)	219, 825, 1166, 1209
FaeI	CATG	5 cut(s)	503, 592, 733, 1655, 1688
FalI	AAGNNNNNCTT	4 cut(s)	754, 786, 831, 863
FaqI	GGGAC	4 cut(s)	56, 107, 264, 1229
FatI	CATG	5 cut(s)	499, 588, 729, 1651, 1684
FauI	CCCGC	2 cut(s)	32, 240
FblI	GTMKAC	3 cut(s)	807, 935, 1661
FokI	GGATG	4 cut(s)	277, 449, 1474, 1691
FriOI	GRGCYC	1 cut(s)	1000
FspBI	CTAG	5 cut(s)	942, 1167, 1299, 1418, 1569
GlaI	GCGC	2 cut(s)	6, 170
GsuI	CTGGAG	1 cut(s)	1014
HaeII	RGCGCY	1 cut(s)	8
HapII	CCGG	4 cut(s)	8, 23, 281, 400
HgaI	GACGC	2 cut(s)	48, 175
HhaI	GCGC	2 cut(s)	7, 171
Hin1I	GRCGYC	4 cut(s)	5, 59, 96, 155
Hin1II	CATG	5 cut(s)	503, 592, 733, 1655, 1688
Hin6I	GCGC	2 cut(s)	5, 169
HinP1I	GCGC	2 cut(s)	5, 169
HinfI	GANTC	5 cut(s)	104, 605, 1273, 1610, 1639
HpaII	CCGG	4 cut(s)	8, 23, 281, 400
HphI	GGTGA	3 cut(s)	91, 494, 755
Hpy166II	GTNNAC	4 cut(s)	808, 936, 1136, 1662
Hpy188I	TCNGA	4 cut(s)	109, 445, 864, 1489
Hpy188III	TCNNGA	7 cut(s)	88, 416, 799, 1103, 1175, 1277, 1495
Hpy8I	GTNNAC	4 cut(s)	808, 936, 1136, 1662
Hpy99I	CGWCG	2 cut(s)	64, 169
HpyAV	CCTTC	8 cut(s)	41, 531, 534, 702, 780, 1418, 1494, 1669
HpyCH4III	ACNGT	6 cut(s)	137, 546, 570, 1376, 1433, 1504
HpyCH4IV	ACGT	4 cut(s)	96, 155, 1041, 1528
HpyCH4V	TGCA	6 cut(s)	232, 493, 838, 955, 1346, 1445
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 215, 224, 281, 446, 821, 844, 1442
HpyF3I	CTNAG	7 cut(s)	333, 392, 667, 985, 1130, 1335, 1656
HpySE526I	ACGT	4 cut(s)	96, 155, 1041, 1528
Hsp92I	GRCGYC	4 cut(s)	5, 59, 96, 155
Hsp92II	CATG	5 cut(s)	503, 592, 733, 1655, 1688
HspAI	GCGC	2 cut(s)	5, 169
KasI	GGCGCC	1 cut(s)	4
KpnI	GGTACC	1 cut(s)	688
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
KspI	CCGCGG	1 cut(s)	213
Kzo9I	GATC	7 cut(s)	109, 264, 515, 856, 864, 889, 1087
LguI	GCTCTTC	2 cut(s)	46, 1115
LmnI	GCTCC	3 cut(s)	723, 801, 995
Lsp1109I	GCAGC	3 cut(s)	183, 586, 1561
LweI	GCATC	3 cut(s)	427, 480, 964
MabI	ACCWGGT	1 cut(s)	1138
MaeI	CTAG	5 cut(s)	942, 1167, 1299, 1418, 1569
MaeII	ACGT	4 cut(s)	96, 155, 1041, 1528
MaeIII	GTNAC	5 cut(s)	97, 151, 482, 1019, 1691
MalI	GATC	7 cut(s)	111, 266, 517, 858, 866, 891, 1089
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	7 cut(s)	109, 264, 515, 856, 864, 889, 1087
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	2 cut(s)	1000, 1237
MlsI	TGGCCA	1 cut(s)	654
MluI	ACGCGT	1 cut(s)	177
MluNI	TGGCCA	1 cut(s)	654
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	2 cut(s)	123, 1138
Mox20I	TGGCCA	1 cut(s)	654
Mph1103I	ATGCAT	1 cut(s)	957
MreI	CGCCGGCG	1 cut(s)	7
MroNI	GCCGGC	1 cut(s)	7
MroXI	GAANNNNTTC	2 cut(s)	354, 1407
MscI	TGGCCA	1 cut(s)	654
MseI	TTAA	4 cut(s)	261, 759, 963, 1287
MslI	CAYNNNNRTG	2 cut(s)	242, 872
Msp20I	TGGCCA	1 cut(s)	654
MspA1I	CMGCKG	2 cut(s)	212, 902
MspI	CCGG	4 cut(s)	8, 23, 281, 400
MspR9I	CCNGG	5 cut(s)	24, 918, 993, 1074, 1140
Mva1269I	GAATGC	1 cut(s)	1346
MvaI	CCWGG	4 cut(s)	918, 993, 1074, 1140
MvnI	CGCG	3 cut(s)	169, 179, 212
MwoI	GCNNNNNNNGC	8 cut(s)	11, 215, 224, 281, 446, 821, 844, 1442
NaeI	GCCGGC	1 cut(s)	9
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	24
NdeII	GATC	7 cut(s)	109, 264, 515, 856, 864, 889, 1087
NgoMIV	GCCGGC	1 cut(s)	7
NlaIII	CATG	5 cut(s)	503, 592, 733, 1655, 1688
NlaIV	GGNNCC	3 cut(s)	6, 594, 686
NmeAIII	GCCGAG	1 cut(s)	796
NmuCI	GTSAC	3 cut(s)	97, 151, 482
NsiI	ATGCAT	1 cut(s)	957
NspI	RCATGY	3 cut(s)	503, 1655, 1688
OliI	CACNNNNGTG	1 cut(s)	242
PceI	AGGCCT	2 cut(s)	1054, 1171
PciI	ACATGT	2 cut(s)	499, 1684
PciSI	GCTCTTC	2 cut(s)	46, 1115
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 161
PctI	GAATGC	1 cut(s)	1346
PdiI	GCCGGC	1 cut(s)	9
PdmI	GAANNNNTTC	2 cut(s)	354, 1407
PfeI	GAWTC	4 cut(s)	605, 1273, 1610, 1639
PflMI	CCANNNNNTGG	1 cut(s)	902
PleI	GAGTC	1 cut(s)	98
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	98
PpuMI	RGGWCCY	2 cut(s)	1061, 1163
PscI	ACATGT	2 cut(s)	499, 1684
Psp124BI	GAGCTC	1 cut(s)	1000
Psp5II	RGGWCCY	2 cut(s)	1061, 1163
Psp6I	CCWGG	4 cut(s)	916, 991, 1072, 1138
PspEI	GGTNACC	1 cut(s)	482
PspGI	CCWGG	4 cut(s)	916, 991, 1072, 1138
PspN4I	GGNNCC	3 cut(s)	6, 594, 686
PspPI	GGNCC	7 cut(s)	593, 905, 989, 1031, 1061, 1163, 1520
PspPPI	RGGWCCY	2 cut(s)	1061, 1163
PsrI	GAACNNNNNNTAC	2 cut(s)	107, 139
PsuI	RGATCY	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	902
RsaI	GTAC	2 cut(s)	686, 1479
RsaNI	GTAC	2 cut(s)	685, 1478
RseI	CAYNNNNRTG	2 cut(s)	242, 872
SacI	GAGCTC	1 cut(s)	1000
SacII	CCGCGG	1 cut(s)	213
SapI	GCTCTTC	2 cut(s)	46, 1115
SaqAI	TTAA	4 cut(s)	261, 759, 963, 1287
Sau3AI	GATC	7 cut(s)	109, 264, 515, 856, 864, 889, 1087
Sau96I	GGNCC	7 cut(s)	593, 905, 989, 1031, 1061, 1163, 1520
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	5 cut(s)	24, 918, 993, 1074, 1140
SduI	GDGCHC	2 cut(s)	1000, 1237
SexAI	ACCWGGT	1 cut(s)	1138
SfaNI	GCATC	3 cut(s)	427, 480, 964
SfcI	CTRYAG	1 cut(s)	1248
SfiI	GGCCNNNNNGGCC	1 cut(s)	215
SfoI	GGCGCC	1 cut(s)	6
Sfr303I	CCGCGG	1 cut(s)	213
SgrAI	CRCCGGYG	1 cut(s)	7
SgrBI	CCGCGG	1 cut(s)	213
SinI	GGWCC	3 cut(s)	1031, 1061, 1163
SmiMI	CAYNNNNRTG	2 cut(s)	242, 872
SmlI	CTYRAG	2 cut(s)	359, 1547
SmoI	CTYRAG	2 cut(s)	359, 1547
SseBI	AGGCCT	2 cut(s)	1054, 1171
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	422
SspMI	CTAG	5 cut(s)	942, 1167, 1299, 1418, 1569
SstI	GAGCTC	1 cut(s)	1000
StuI	AGGCCT	2 cut(s)	1054, 1171
StyD4I	CCNGG	5 cut(s)	22, 916, 991, 1072, 1138
StyI	CCWWGG	4 cut(s)	219, 825, 1166, 1209
TaaI	ACNGT	6 cut(s)	137, 546, 570, 1376, 1433, 1504
TaiI	ACGT	4 cut(s)	99, 158, 1044, 1531
TaqI	TCGA	9 cut(s)	62, 164, 267, 277, 514, 527, 792, 1350, 1673
TauI	GCSGC	8 cut(s)	14, 17, 39, 59, 212, 215, 218, 1128
TfiI	GAWTC	4 cut(s)	605, 1273, 1610, 1639
Tru1I	TTAA	4 cut(s)	261, 759, 963, 1287
Tru9I	TTAA	4 cut(s)	261, 759, 963, 1287
TscAI	CASTG	3 cut(s)	892, 1381, 1405
TseFI	GTSAC	3 cut(s)	97, 151, 482
TseI	GCWGC	3 cut(s)	171, 599, 1574
Tsp45I	GTSAC	3 cut(s)	97, 151, 482
TspDTI	ATGAA	5 cut(s)	476, 723, 981, 1400, 1695
TspRI	CASTG	3 cut(s)	892, 1381, 1405
Van91I	CCANNNNNTGG	1 cut(s)	902
VpaK11BI	GGWCC	3 cut(s)	1031, 1061, 1163
XapI	RAATTY	5 cut(s)	269, 353, 645, 794, 1403
XceI	RCATGY	3 cut(s)	503, 1655, 1688
XmaJI	CCTAGG	1 cut(s)	1166
XmiI	GTMKAC	3 cut(s)	807, 935, 1661
XmnI	GAANNNNTTC	2 cut(s)	354, 1407
XspI	CTAG	5 cut(s)	942, 1167, 1299, 1418, 1569
ZraI	GACGTC	2 cut(s)	97, 156
Zsp2I	ATGCAT	1 cut(s)	957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.