DNA (cytosine-5)-methyltransferase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr3g0490961 |
| rosa_laevigata | RLG00000003376 RLG00000009552 RLG00000030034 RLG00000030420 |
| rosa_roxburghii | Rroxscaffold_3G00221510 Rroxscaffold_5G00337500 |
| rosa_rugosa | Rorug01G0065900 Rorug04G0009000 Rorug05G0079800 |
| rosa_samantha | Rh2DG569000 Rh3AG337800 Rh3DG302200 Rh5CG578600 Rh6AG091900 Rh6CG079600 Rh6CG206700 Rh6DG075100 Rh7BG186300 Rh7BG186400 |
| rosa_wichuraiana | Rw4G012570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 175 |
| Acc36I | ACCTGC | 1 cut(s) | 175 |
| AccI | GTMKAC | 2 cut(s) | 96, 177 |
| AccII | CGCG | 1 cut(s) | 599 |
| AciI | CCGC | 2 cut(s) | 597, 599 |
| AcsI | RAATTY | 1 cut(s) | 218 |
| AfaI | GTAC | 1 cut(s) | 68 |
| AgsI | TTSAA | 4 cut(s) | 121, 235, 473, 515 |
| AluBI | AGCT | 1 cut(s) | 420 |
| AluI | AGCT | 1 cut(s) | 420 |
| Alw21I | GWGCWC | 1 cut(s) | 451 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 395 |
| ApoI | RAATTY | 1 cut(s) | 218 |
| AsuHPI | GGTGA | 2 cut(s) | 329, 638 |
| Bbv12I | GWGCWC | 1 cut(s) | 451 |
| BccI | CCATC | 1 cut(s) | 26 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 419, 453 |
| BciVI | GTATCC | 1 cut(s) | 17 |
| BfaI | CTAG | 1 cut(s) | 462 |
| BfuAI | ACCTGC | 1 cut(s) | 175 |
| BfuI | GTATCC | 1 cut(s) | 17 |
| BmsI | GCATC | 2 cut(s) | 427, 508 |
| BpmI | CTGGAG | 1 cut(s) | 362 |
| BpuEI | CTTGAG | 1 cut(s) | 266 |
| BsaJI | CCNNGG | 1 cut(s) | 597 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 33 |
| Bse1I | ACTGG | 1 cut(s) | 345 |
| BseDI | CCNNGG | 1 cut(s) | 597 |
| BseMII | CTCAG | 2 cut(s) | 567, 572 |
| BseNI | ACTGG | 1 cut(s) | 345 |
| BsgI | GTGCAG | 1 cut(s) | 189 |
| Bsh1236I | CGCG | 1 cut(s) | 599 |
| BsiHKAI | GWGCWC | 1 cut(s) | 451 |
| Bsp1286I | GDGCHC | 1 cut(s) | 451 |
| Bsp143I | GATC | 1 cut(s) | 137 |
| BspACI | CCGC | 2 cut(s) | 597, 599 |
| BspCNI | CTCAG | 2 cut(s) | 568, 571 |
| BspFNI | CGCG | 1 cut(s) | 599 |
| BspHI | TCATGA | 1 cut(s) | 285 |
| BspMI | ACCTGC | 1 cut(s) | 175 |
| BsrI | ACTGG | 1 cut(s) | 345 |
| BssECI | CCNNGG | 1 cut(s) | 597 |
| BssMI | GATC | 1 cut(s) | 137 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 446 |
| BstC8I | GCNNGC | 2 cut(s) | 105, 442 |
| BstDEI | CTNAG | 2 cut(s) | 558, 576 |
| BstDSI | CCRYGG | 1 cut(s) | 597 |
| BstFNI | CGCG | 1 cut(s) | 599 |
| BstKTI | GATC | 1 cut(s) | 140 |
| BstMBI | GATC | 1 cut(s) | 137 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 426, 446 |
| BstNSI | RCATGY | 1 cut(s) | 184 |
| BstUI | CGCG | 1 cut(s) | 599 |
| BsuI | GTATCC | 1 cut(s) | 17 |
| BtgI | CCRYGG | 1 cut(s) | 597 |
| BtsI | GCAGTG | 1 cut(s) | 451 |
| BtsIMutI | CAGTG | 2 cut(s) | 27, 451 |
| BveI | ACCTGC | 1 cut(s) | 175 |
| Cac8I | GCNNGC | 2 cut(s) | 105, 442 |
| CaiI | CAGNNNCTG | 1 cut(s) | 395 |
| CciI | TCATGA | 1 cut(s) | 285 |
| Cfr42I | CCGCGG | 1 cut(s) | 600 |
| Csp6I | GTAC | 1 cut(s) | 67 |
| CviAII | CATG | 3 cut(s) | 181, 286, 347 |
| CviJI | RGCY | 4 cut(s) | 227, 244, 420, 485 |
| CviKI_1 | RGCY | 4 cut(s) | 227, 244, 420, 485 |
| CviQI | GTAC | 1 cut(s) | 67 |
| DdeI | CTNAG | 2 cut(s) | 558, 576 |
| DpnI | GATC | 1 cut(s) | 139 |
| DpnII | GATC | 1 cut(s) | 137 |
| Eco32I | GATATC | 1 cut(s) | 564 |
| EcoRV | GATATC | 1 cut(s) | 564 |
| FaeI | CATG | 3 cut(s) | 184, 289, 350 |
| FatI | CATG | 3 cut(s) | 180, 285, 346 |
| FblI | GTMKAC | 2 cut(s) | 96, 177 |
| FspBI | CTAG | 1 cut(s) | 462 |
| GsuI | CTGGAG | 1 cut(s) | 362 |
| Hin1II | CATG | 3 cut(s) | 184, 289, 350 |
| HinfI | GANTC | 5 cut(s) | 265, 272, 392, 407, 469 |
| HphI | GGTGA | 2 cut(s) | 329, 638 |
| Hpy166II | GTNNAC | 3 cut(s) | 67, 97, 178 |
| Hpy188I | TCNGA | 4 cut(s) | 137, 391, 406, 561 |
| Hpy188III | TCNNGA | 4 cut(s) | 269, 286, 413, 452 |
| Hpy8I | GTNNAC | 3 cut(s) | 67, 97, 178 |
| Hpy99I | CGWCG | 1 cut(s) | 82 |
| HpyAV | CCTTC | 3 cut(s) | 55, 229, 233 |
| HpyCH4IV | ACGT | 1 cut(s) | 77 |
| HpyCH4V | TGCA | 5 cut(s) | 107, 170, 184, 440, 636 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 426, 446 |
| HpyF3I | CTNAG | 2 cut(s) | 558, 576 |
| HpySE526I | ACGT | 1 cut(s) | 77 |
| Hsp92II | CATG | 3 cut(s) | 184, 289, 350 |
| KspI | CCGCGG | 1 cut(s) | 600 |
| Kzo9I | GATC | 1 cut(s) | 137 |
| LmnI | GCTCC | 2 cut(s) | 343, 526 |
| LpnPI | CCDG | 9 cut(s) | 170, 213, 282, 300, 326, 381, 398, 437, 588 |
| LweI | GCATC | 2 cut(s) | 427, 508 |
| MaeI | CTAG | 1 cut(s) | 462 |
| MaeII | ACGT | 1 cut(s) | 77 |
| MaeIII | GTNAC | 1 cut(s) | 362 |
| MalI | GATC | 1 cut(s) | 139 |
| MboI | GATC | 1 cut(s) | 137 |
| MboII | GAAGA | 3 cut(s) | 274, 527, 620 |
| MhlI | GDGCHC | 1 cut(s) | 451 |
| MluCI | AATT | 1 cut(s) | 218 |
| MnlI | CCTC | 5 cut(s) | 5, 51, 207, 475, 610 |
| MslI | CAYNNNNRTG | 2 cut(s) | 185, 284 |
| MspA1I | CMGCKG | 1 cut(s) | 599 |
| MvnI | CGCG | 1 cut(s) | 599 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 426, 446 |
| NdeII | GATC | 1 cut(s) | 137 |
| NlaIII | CATG | 3 cut(s) | 184, 289, 350 |
| NspI | RCATGY | 1 cut(s) | 184 |
| PagI | TCATGA | 1 cut(s) | 285 |
| PaqCI | CACCTGC | 1 cut(s) | 175 |
| PfeI | GAWTC | 5 cut(s) | 265, 272, 392, 407, 469 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 182, 214 |
| PstNI | CAGNNNCTG | 1 cut(s) | 395 |
| RsaI | GTAC | 1 cut(s) | 68 |
| RsaNI | GTAC | 1 cut(s) | 67 |
| RseI | CAYNNNNRTG | 2 cut(s) | 185, 284 |
| SacII | CCGCGG | 1 cut(s) | 600 |
| Sau3AI | GATC | 1 cut(s) | 137 |
| SduI | GDGCHC | 1 cut(s) | 451 |
| SetI | ASST | 6 cut(s) | 16, 66, 80, 189, 422, 577 |
| SfaNI | GCATC | 2 cut(s) | 427, 508 |
| Sfr303I | CCGCGG | 1 cut(s) | 600 |
| SgrBI | CCGCGG | 1 cut(s) | 600 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 185, 284 |
| SmlI | CTYRAG | 1 cut(s) | 245 |
| SmoI | CTYRAG | 1 cut(s) | 245 |
| Sse9I | AATT | 1 cut(s) | 218 |
| SsiI | CCGC | 2 cut(s) | 597, 599 |
| SspMI | CTAG | 1 cut(s) | 462 |
| TaiI | ACGT | 1 cut(s) | 80 |
| TasI | AATT | 1 cut(s) | 218 |
| TatI | WGTACW | 1 cut(s) | 66 |
| TfiI | GAWTC | 5 cut(s) | 265, 272, 392, 407, 469 |
| TscAI | CASTG | 2 cut(s) | 34, 451 |
| TspDTI | ATGAA | 3 cut(s) | 274, 302, 621 |
| TspRI | CASTG | 2 cut(s) | 34, 451 |
| XapI | RAATTY | 1 cut(s) | 218 |
| XceI | RCATGY | 1 cut(s) | 184 |
| XmiI | GTMKAC | 2 cut(s) | 96, 177 |
| XspI | CTAG | 1 cut(s) | 462 |