Rorug05G0079800
HSP70 Family

Belongs to the heat shock protein 70 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
6875308 .. 6879338
4031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0079800.1

Sequence Viewer

Length: 1131 bp
ATGACATCGACAAAGCAGCTTCACGCGCTCATCCCGGCGACCTGCCTCCTACACTCGCGGCTCATTCGGCCGGCGCTCTCCTCCCACCGACGCGACCTCTCTCTTAACACCTCTCTCTCTCCTCCTCCTCACAAAACCAACCACAACCCCAAACCCCCCAATTTCACAGCTCCGTTCCCGATGGGCGACCTAACGGAATCCTCACTCACGCCGTCAACCACCACCCCCAATTCCTCCTCAAACCCTAGGCCCATGCCCGTCCGCGAGGACTGCTGGAGCGAAGACGCCACCTCGACTCTCATCGACTCCTGGGGCCGCCGTTACCTCGAGCTCAACCGCGGCAACCTCCGCCAGAAGGACTGGCAGGAGGTCGCCGACGCCGTCAACGCCCTACACGGCCACACCAAGAAGACGCACCGTACGGACGTCCAGTGCAAGAATCGAATTGATACTATCAAGAAGAAGTACAAGGTCGAGAAGGCTAGGGTTTCTGGAGGATTGACCTCTTCCTGGCCTTTTTTCGATCGCCTCGACGCTCTCATCGGATCTAACGTCAAGAAGCCCTCGCCGTCGTCGCTCTCGCCTTCGCCGCCGGTCGCGGTTCCGCTGCCGCTGGCGTACCGGAAGCCGTCTCCGGCGAGGCCGGTCGTGACGGCCGTGGCTCTGCCGCAGAAGAGGTCGGCGTCCGCGGCGGCGATGAACGAGGGGTTCTTCAGGATGAATTACTCGGCGGTCGCTGCTGCGGCGGCGGCGGAGAACGACGACGACGACGACGACGACGACGAAGAGGATGAGGAAGATAACGACGACGGGGATGAGGAGGCGGAGGTGGAGAGGGAGAGGGAGAGAGACAGCGACGGCGAGATTGGAGGCGGCGGCGGAGGAGAAGGGTTGAAGAGATTGGCGAGGGCAATAGAGAGGTTTGGGGAGGTGTATCAGAGAGTGGAGGCTGAGAAGTTGAGGCAGATGGTGGAGTTGGAAAAGCAGAGAATGCAGTTTGCTAAGGACTTGGAGGTTCAGAGAATGAGGATGTTCATGGACACACAGGTCCAGCTGGAGCGGATCAAGCACGGCAAGCGACCCGGCTCTAATGGTGAGCCGAATCTGTCAGCTTTCTTCTGTATGCTATAG

Protein Analysis

376

Amino Acids

41.9

Weight (kDa)

6.19

Isoelectric Point (pI)

49.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 90 - 180 6.1e-20 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1046
AatII GACGTC 1 cut(s) 429
Acc36I ACCTGC 1 cut(s) 50
AccBSI CCGCTC 1 cut(s) 1060
AccII CGCG 7 cut(s) 26, 58, 93, 264, 339, 599, 689
AclWI GGATC 2 cut(s) 553, 1070
AcoI YGGCCR 3 cut(s) 68, 397, 654
AcuI CTGAAG 1 cut(s) 697
AcyI GRCGYC 4 cut(s) 285, 378, 426, 683
AfaI GTAC 3 cut(s) 421, 467, 620
AfiI CCNNNNNNNGG 2 cut(s) 355, 510
AgsI TTSAA 1 cut(s) 895
AjnI CCWGG 2 cut(s) 308, 509
AluBI AGCT 5 cut(s) 19, 170, 331, 1054, 1112
AluI AGCT 5 cut(s) 19, 170, 331, 1054, 1112
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 2 cut(s) 636, 843
AlwI GGATC 2 cut(s) 553, 1070
Ama87I CYCGRG 1 cut(s) 326
AoxI GGCC 7 cut(s) 68, 248, 313, 397, 512, 641, 654
ApeKI GCWGC 4 cut(s) 16, 607, 737, 740
AspA2I CCTAGG 1 cut(s) 245
AspLEI GCGC 2 cut(s) 28, 76
AspS9I GGNCC 3 cut(s) 249, 313, 1048
AsuC2I CCSGG 2 cut(s) 35, 1083
AsuHPI GGTGA 1 cut(s) 1106
AvaI CYCGRG 1 cut(s) 326
AvaII GGWCC 1 cut(s) 1048
AvrII CCTAGG 1 cut(s) 245
BanII GRGCYC 1 cut(s) 333
BbsI GAAGAC 2 cut(s) 288, 416
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 4 cut(s) 28, 594, 724, 727
BccI CCATC 2 cut(s) 175, 961
BciT130I CCWGG 2 cut(s) 310, 511
BcnI CCSGG 2 cut(s) 35, 1083
BcoDI GTCTC 2 cut(s) 636, 843
BfaI CTAG 2 cut(s) 246, 483
BfmI CTRYAG 1 cut(s) 1127
BfoI RGCGCY 1 cut(s) 77
BfuAI ACCTGC 1 cut(s) 50
BlnI CCTAGG 1 cut(s) 245
Bme1390I CCNGG 4 cut(s) 35, 310, 511, 1083
Bme18I GGWCC 1 cut(s) 1048
BmeT110I CYCGRG 1 cut(s) 326
BmgT120I GGNCC 3 cut(s) 249, 313, 1048
BmiI GGNNCC 2 cut(s) 314, 603
BmrFI CCNGG 4 cut(s) 35, 310, 511, 1083
BpiI GAAGAC 2 cut(s) 288, 416
BpmI CTGGAG 3 cut(s) 295, 513, 1076
Bpu10I CCTNAGC 1 cut(s) 1002
BpuMI CCSGG 2 cut(s) 35, 1083
BsaHI GRCGYC 4 cut(s) 285, 378, 426, 683
BsaJI CCNNGG 5 cut(s) 245, 309, 337, 657, 687
BsaWI WCCGGW 1 cut(s) 621
Bsc4I CCNNNNNNNGG 2 cut(s) 355, 510
Bse118I RCCGGY 3 cut(s) 70, 592, 643
Bse1I ACTGG 2 cut(s) 365, 430
BseBI CCWGG 2 cut(s) 310, 511
BseDI CCNNGG 5 cut(s) 245, 309, 337, 657, 687
BseGI GGATG 5 cut(s) 30, 723, 796, 820, 1035
BseLI CCNNNNNNNGG 2 cut(s) 355, 510
BseMII CTCAG 1 cut(s) 942
BseNI ACTGG 2 cut(s) 365, 430
BseRI GAGGAG 7 cut(s) 70, 111, 114, 117, 226, 833, 897
BseX3I CGGCCG 2 cut(s) 68, 654
BseXI GCAGC 4 cut(s) 28, 594, 724, 727
Bsh1236I CGCG 7 cut(s) 26, 58, 93, 264, 339, 599, 689
Bsh1285I CGRYCG 6 cut(s) 71, 526, 597, 648, 657, 735
BshFI GGCC 7 cut(s) 70, 250, 315, 399, 514, 643, 656
BsiEI CGRYCG 6 cut(s) 71, 526, 597, 648, 657, 735
BsiHKAI GWGCWC 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 7 cut(s) 35, 71, 593, 622, 635, 644, 1083
BsiWI CGTACG 1 cut(s) 419
BslI CCNNNNNNNGG 2 cut(s) 355, 510
BsmAI GTCTC 2 cut(s) 636, 843
BsmBI CGTCTC 1 cut(s) 636
BsmI GAATGC 1 cut(s) 996
BsnI GGCC 7 cut(s) 70, 250, 315, 399, 514, 643, 656
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 3 cut(s) 523, 545, 1062
BspANI GGCC 7 cut(s) 70, 250, 315, 399, 514, 643, 656
BspCNI CTCAG 1 cut(s) 943
BspFNI CGCG 7 cut(s) 26, 58, 93, 264, 339, 599, 689
BspLI GGNNCC 2 cut(s) 314, 603
BspMI ACCTGC 1 cut(s) 50
BspPI GGATC 2 cut(s) 553, 1070
BsrBI CCGCTC 1 cut(s) 1060
BsrFI RCCGGY 3 cut(s) 70, 592, 643
BsrI ACTGG 2 cut(s) 365, 430
BssAI RCCGGY 3 cut(s) 70, 592, 643
BssECI CCNNGG 5 cut(s) 245, 309, 337, 657, 687
BssMI GATC 3 cut(s) 523, 545, 1062
BssNI GRCGYC 4 cut(s) 285, 378, 426, 683
BssT1I CCWWGG 1 cut(s) 245
Bst2UI CCWGG 2 cut(s) 310, 511
Bst4CI ACNGT 1 cut(s) 419
Bst6I CTCTTC 4 cut(s) 511, 668, 780, 890
BstACI GRCGYC 4 cut(s) 285, 378, 426, 683
BstAPI GCANNNNNTGC 1 cut(s) 991
BstC8I GCNNGC 3 cut(s) 72, 615, 1076
BstDEI CTNAG 2 cut(s) 951, 1002
BstDSI CCRYGG 3 cut(s) 337, 657, 687
BstF5I GGATG 5 cut(s) 30, 723, 796, 820, 1035
BstFNI CGCG 7 cut(s) 26, 58, 93, 264, 339, 599, 689
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 2 cut(s) 28, 76
BstKTI GATC 3 cut(s) 526, 548, 1065
BstMAI GTCTC 2 cut(s) 636, 843
BstMBI GATC 3 cut(s) 523, 545, 1062
BstMCI CGRYCG 6 cut(s) 71, 526, 597, 648, 657, 735
BstNI CCWGG 2 cut(s) 310, 511
BstSCI CCNGG 4 cut(s) 33, 308, 509, 1081
BstSFI CTRYAG 1 cut(s) 1127
BstUI CGCG 7 cut(s) 26, 58, 93, 264, 339, 599, 689
BstV1I GCAGC 4 cut(s) 28, 594, 724, 727
BstV2I GAAGAC 2 cut(s) 288, 416
BstX2I RGATCY 1 cut(s) 545
BstYI RGATCY 1 cut(s) 545
BstZI CGGCCG 2 cut(s) 68, 654
BsuRI GGCC 7 cut(s) 70, 250, 315, 399, 514, 643, 656
BtgI CCRYGG 3 cut(s) 337, 657, 687
BtgZI GCGATG 1 cut(s) 710
BtsCI GGATG 5 cut(s) 30, 723, 796, 820, 1035
BtsIMutI CAGTG 1 cut(s) 437
BveI ACCTGC 1 cut(s) 50
Cac8I GCNNGC 3 cut(s) 72, 615, 1076
CfoI GCGC 2 cut(s) 28, 76
Cfr10I RCCGGY 3 cut(s) 70, 592, 643
Cfr13I GGNCC 3 cut(s) 249, 313, 1048
Cfr42I CCGCGG 2 cut(s) 340, 690
CseI GACGC 6 cut(s) 99, 293, 386, 421, 542, 672
Csp6I GTAC 3 cut(s) 420, 466, 619
CviAII CATG 2 cut(s) 253, 1036
CviQI GTAC 3 cut(s) 420, 466, 619
DdeI CTNAG 2 cut(s) 951, 1002
DpnI GATC 3 cut(s) 525, 547, 1064
DpnII GATC 3 cut(s) 523, 545, 1062
DrdI GACNNNNNNGTC 1 cut(s) 1046
DseDI GACNNNNNNGTC 1 cut(s) 1046
EaeI YGGCCR 3 cut(s) 68, 397, 654
EagI CGGCCG 2 cut(s) 68, 654
Eam1104I CTCTTC 4 cut(s) 511, 668, 780, 890
EarI CTCTTC 4 cut(s) 511, 668, 780, 890
EciI GGCGGA 4 cut(s) 338, 767, 839, 894
Ecl136II GAGCTC 1 cut(s) 331
EclXI CGGCCG 2 cut(s) 68, 654
Eco130I CCWWGG 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 1048
Eco52I CGGCCG 2 cut(s) 68, 654
Eco53kI GAGCTC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 697
Eco88I CYCGRG 1 cut(s) 326
EcoICRI GAGCTC 1 cut(s) 331
EcoRII CCWGG 2 cut(s) 308, 509
EcoT14I CCWWGG 1 cut(s) 245
EcoT38I GRGCYC 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 245
Esp3I CGTCTC 1 cut(s) 636
FaeI CATG 2 cut(s) 256, 1039
FaiI YATR 4 cut(s) 254, 1037, 1124, 1129
FatI CATG 2 cut(s) 252, 1035
FokI GGATG 5 cut(s) 17, 730, 803, 827, 1042
FriOI GRGCYC 1 cut(s) 333
FspBI CTAG 2 cut(s) 246, 483
GlaI GCGC 2 cut(s) 27, 75
GsuI CTGGAG 3 cut(s) 295, 513, 1076
HaeII RGCGCY 1 cut(s) 77
HaeIII GGCC 7 cut(s) 70, 250, 315, 399, 514, 643, 656
HapII CCGG 7 cut(s) 35, 71, 593, 622, 635, 644, 1083
HgaI GACGC 6 cut(s) 99, 293, 386, 421, 542, 672
HhaI GCGC 2 cut(s) 28, 76
Hin1I GRCGYC 4 cut(s) 285, 378, 426, 683
Hin1II CATG 2 cut(s) 256, 1039
Hin6I GCGC 2 cut(s) 26, 74
HinP1I GCGC 2 cut(s) 26, 74
HincII GTYRAC 2 cut(s) 216, 385
HindII GTYRAC 2 cut(s) 216, 385
HinfI GANTC 5 cut(s) 197, 295, 305, 439, 1102
HpaII CCGG 7 cut(s) 35, 71, 593, 622, 635, 644, 1083
HphI GGTGA 1 cut(s) 1106
Hpy166II GTNNAC 2 cut(s) 216, 385
Hpy188I TCNGA 3 cut(s) 545, 939, 1020
Hpy188III TCNNGA 7 cut(s) 178, 457, 475, 492, 556, 649, 715
Hpy8I GTNNAC 2 cut(s) 216, 385
HpyAV CCTTC 4 cut(s) 349, 472, 594, 881
HpyCH4III ACNGT 1 cut(s) 419
HpyCH4IV ACGT 2 cut(s) 426, 552
HpyCH4V TGCA 2 cut(s) 435, 994
HpyF3I CTNAG 2 cut(s) 951, 1002
HpySE526I ACGT 2 cut(s) 426, 552
Hsp92I GRCGYC 4 cut(s) 285, 378, 426, 683
Hsp92II CATG 2 cut(s) 256, 1039
HspAI GCGC 2 cut(s) 26, 74
KroI GCCGGC 1 cut(s) 70
KroNI GCCGGC 1 cut(s) 72
KspI CCGCGG 2 cut(s) 340, 690
Kzo9I GATC 3 cut(s) 523, 545, 1062
LmnI GCTCC 3 cut(s) 175, 276, 1057
Lsp1109I GCAGC 4 cut(s) 28, 594, 724, 727
MaeI CTAG 2 cut(s) 246, 483
MaeII ACGT 2 cut(s) 426, 552
MaeIII GTNAC 2 cut(s) 320, 649
MalI GATC 3 cut(s) 525, 547, 1064
MbiI CCGCTC 1 cut(s) 1060
MboI GATC 3 cut(s) 523, 545, 1062
MflI RGATCY 1 cut(s) 545
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 4 cut(s) 160, 229, 444, 721
MlyI GAGTC 2 cut(s) 289, 299
MmeI TCCRAC 1 cut(s) 957
MroNI GCCGGC 1 cut(s) 70
MseI TTAA 1 cut(s) 105
MspA1I CMGCKG 5 cut(s) 339, 607, 613, 689, 1054
MspI CCGG 7 cut(s) 35, 71, 593, 622, 635, 644, 1083
MspR9I CCNGG 4 cut(s) 35, 310, 511, 1083
Mva1269I GAATGC 1 cut(s) 996
MvaI CCWGG 2 cut(s) 310, 511
MvnI CGCG 7 cut(s) 26, 58, 93, 264, 339, 599, 689
NaeI GCCGGC 1 cut(s) 72
NciI CCSGG 2 cut(s) 35, 1083
NdeII GATC 3 cut(s) 523, 545, 1062
NgoMIV GCCGGC 1 cut(s) 70
NlaIII CATG 2 cut(s) 256, 1039
NlaIV GGNNCC 2 cut(s) 314, 603
NmeAIII GCCGAG 1 cut(s) 707
NmuCI GTSAC 1 cut(s) 649
PaeR7I CTCGAG 1 cut(s) 326
PctI GAATGC 1 cut(s) 996
PdiI GCCGGC 1 cut(s) 72
PfeI GAWTC 3 cut(s) 197, 439, 1102
Pfl23II CGTACG 1 cut(s) 419
PflFI GACNNNGTC 1 cut(s) 380
Ple19I CGATCG 1 cut(s) 526
PleI GAGTC 2 cut(s) 289, 299
PpsI GAGTC 2 cut(s) 289, 299
Psp124BI GAGCTC 1 cut(s) 333
Psp6I CCWGG 2 cut(s) 308, 509
PspGI CCWGG 2 cut(s) 308, 509
PspLI CGTACG 1 cut(s) 419
PspN4I GGNNCC 2 cut(s) 314, 603
PspPI GGNCC 3 cut(s) 249, 313, 1048
PspXI VCTCGAGB 1 cut(s) 326
PsuI RGATCY 1 cut(s) 545
PsyI GACNNNGTC 1 cut(s) 380
PvuI CGATCG 1 cut(s) 526
PvuII CAGCTG 1 cut(s) 1054
RsaI GTAC 3 cut(s) 421, 467, 620
RsaNI GTAC 3 cut(s) 420, 466, 619
SacI GAGCTC 1 cut(s) 333
SacII CCGCGG 2 cut(s) 340, 690
SaqAI TTAA 1 cut(s) 105
Sau3AI GATC 3 cut(s) 523, 545, 1062
Sau96I GGNCC 3 cut(s) 249, 313, 1048
SchI GAGTC 2 cut(s) 289, 299
ScrFI CCNGG 4 cut(s) 35, 310, 511, 1083
SduI GDGCHC 1 cut(s) 333
SfcI CTRYAG 1 cut(s) 1127
Sfr274I CTCGAG 1 cut(s) 326
Sfr303I CCGCGG 2 cut(s) 340, 690
SgrBI CCGCGG 2 cut(s) 340, 690
SinI GGWCC 1 cut(s) 1048
SlaI CTCGAG 1 cut(s) 326
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 4 cut(s) 160, 229, 444, 721
SspMI CTAG 2 cut(s) 246, 483
SstI GAGCTC 1 cut(s) 333
StyD4I CCNGG 4 cut(s) 33, 308, 509, 1081
StyI CCWWGG 1 cut(s) 245
TaaI ACNGT 1 cut(s) 419
TaiI ACGT 2 cut(s) 429, 555
TaqI TCGA 8 cut(s) 8, 293, 303, 327, 442, 474, 522, 531
TasI AATT 4 cut(s) 160, 229, 444, 721
TatI WGTACW 1 cut(s) 465
TfiI GAWTC 3 cut(s) 197, 439, 1102
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 1 cut(s) 437
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 4 cut(s) 16, 607, 737, 740
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 3 cut(s) 713, 734, 1024
TspGWI ACGGA 3 cut(s) 162, 209, 437
TspRI CASTG 1 cut(s) 437
Tth111I GACNNNGTC 1 cut(s) 380
VpaK11BI GGWCC 1 cut(s) 1048
XhoI CTCGAG 1 cut(s) 326
XmaJI CCTAGG 1 cut(s) 245
XspI CTAG 2 cut(s) 246, 483
ZraI GACGTC 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.