Rh5BG167200

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002306
Physical Location & Seq
Reverse (-)
17576738 .. 17578529
1792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG167200.1

Sequence Viewer

Length: 789 bp
ATGTTTATTCTTCAAGCTTCATCTTTGAACATGTTGAAGATAGTGGCATCAATTCTAATTCTTCTATTCCCCGCAATAGTATTTGGAGAGTGTACCTGTGAATCTGAAGACATACAGGACAACAACGATGAAGCACTAAAGTACAAGCTAGGCTCCATTGCTTCAATTCTTGTTTCTGGTGCACTGGGGGTAAGTCTGCCTCTGCTAGGCAAGAAGATCCCAACTCTAAGACCCGAGAACGATATCTTCTTCATTGTCAAGGCCTTTGCGGCCGGGGTGATTCTAGCGACTGCCTTCATTCACATACTACCTGAAGCCTTTGAGACCTTGACTTCACCATGCCTAAAAGAAAATCCATGGGGCAGATTCCCCTTCACAGGCTTTGTGTGTATGATGTCTGCCATCGGAACATTGATGGTTGATACAGTGGCAACTGGGTACTACAAAAGGTCAAGCTTGAAGTCAACCCAGGTGACAATGGATGTAGAGAGCATAGCTGGTCTTGATCATGGTCATGCAGGTCATGTACATCATACTGTTCATACACATGGTGCCACACAGGGTAGTAATGCTCATGGCTCTGAAGAATTGAGATCATCATCAGAATTAATCAGGCATAGGGTCATTTCACAAGTGTTGGAGCTGGGGATTCTAGTCCATTCAGTTATAATTGGAATAACATTGGGTGCATCCCAAAACCCAGATATAATAAAGCCTCTCCTGGTGGCTTTGTCTTTCCATCAATTCTTTGAGGGCATCGGACTTGGTGGCTGCATCTCTCAGGTATAA

Protein Analysis

262

Amino Acids

28.12

Weight (kDa)

6.03

Isoelectric Point (pI)

37.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 47 - 261 4.1e-51 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 668
Acc36I ACCTGC 1 cut(s) 509
AccB1I GGYRCC 1 cut(s) 551
AciI CCGC 2 cut(s) 72, 269
AclWI GGATC 1 cut(s) 211
AcoI YGGCCR 1 cut(s) 270
AcuI CTGAAG 3 cut(s) 126, 333, 603
AdeI CACNNNGTG 1 cut(s) 551
AfaI GTAC 4 cut(s) 94, 143, 440, 528
AfiI CCNNNNNNNGG 2 cut(s) 206, 377
AflIII ACRYGT 1 cut(s) 30
AgsI TTSAA 5 cut(s) 14, 28, 37, 165, 460
AjnI CCWGG 2 cut(s) 468, 720
AluBI AGCT 5 cut(s) 17, 148, 456, 497, 643
AluI AGCT 5 cut(s) 17, 148, 456, 497, 643
Alw21I GWGCWC 1 cut(s) 184
Alw26I GTCTC 1 cut(s) 317
Alw44I GTGCAC 1 cut(s) 180
AlwI GGATC 1 cut(s) 211
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 2 cut(s) 261, 270
ApaLI GTGCAC 1 cut(s) 180
ApeKI GCWGC 1 cut(s) 771
AseI ATTAAT 1 cut(s) 608
AsuC2I CCSGG 1 cut(s) 274
AsuHPI GGTGA 3 cut(s) 289, 327, 484
AvaI CYCGRG 1 cut(s) 233
BaeGI GKGCMC 1 cut(s) 184
BanI GGYRCC 1 cut(s) 551
BbsI GAAGAC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 184
BbvI GCAGC 1 cut(s) 758
BccI CCATC 3 cut(s) 409, 410, 747
BciT130I CCWGG 2 cut(s) 470, 722
BclI TGATCA 1 cut(s) 505
BcnI CCSGG 1 cut(s) 274
BcoDI GTCTC 1 cut(s) 317
BfaI CTAG 4 cut(s) 149, 206, 284, 653
BfuAI ACCTGC 1 cut(s) 509
BglI GCCNNNNNGGC 1 cut(s) 269
BisI GCNGC 2 cut(s) 270, 772
BlsI GCNGC 2 cut(s) 271, 773
Bme1390I CCNGG 3 cut(s) 274, 470, 722
BmeT110I CYCGRG 1 cut(s) 233
BmiI GGNNCC 2 cut(s) 154, 553
BmrFI CCNGG 3 cut(s) 274, 470, 722
BmrI ACTGGG 2 cut(s) 194, 444
BmsI GCATC 4 cut(s) 56, 698, 765, 783
BmuI ACTGGG 2 cut(s) 194, 444
BpiI GAAGAC 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 274
BsaBI GATNNNNATC 1 cut(s) 598
BsaI GGTCTC 1 cut(s) 317
BsaJI CCNNGG 3 cut(s) 273, 356, 468
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 377
Bse1I ACTGG 2 cut(s) 189, 439
Bse3DI GCAATG 1 cut(s) 156
Bse8I GATNNNNATC 1 cut(s) 598
BseBI CCWGG 2 cut(s) 470, 722
BseDI CCNNGG 3 cut(s) 273, 356, 468
BseGI GGATG 2 cut(s) 487, 689
BseJI GATNNNNATC 1 cut(s) 598
BseLI CCNNNNNNNGG 2 cut(s) 206, 377
BseMI GCAATG 1 cut(s) 156
BseNI ACTGG 2 cut(s) 189, 439
BseSI GKGCMC 1 cut(s) 184
BseX3I CGGCCG 1 cut(s) 270
BseXI GCAGC 1 cut(s) 758
BseYI CCCAGC 1 cut(s) 643
Bsh1285I CGRYCG 1 cut(s) 273
BshFI GGCC 2 cut(s) 263, 272
BshNI GGYRCC 1 cut(s) 551
BsiEI CGRYCG 1 cut(s) 273
BsiHKAI GWGCWC 1 cut(s) 184
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 1 cut(s) 273
BslI CCNNNNNNNGG 2 cut(s) 206, 377
BsmAI GTCTC 1 cut(s) 317
BsnI GGCC 2 cut(s) 263, 272
Bso31I GGTCTC 1 cut(s) 317
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 184
Bsp1407I TGTACA 1 cut(s) 526
Bsp143I GATC 3 cut(s) 216, 505, 593
Bsp19I CCATGG 1 cut(s) 356
BspACI CCGC 2 cut(s) 72, 269
BspANI GGCC 2 cut(s) 263, 272
BspLI GGNNCC 2 cut(s) 154, 553
BspMI ACCTGC 1 cut(s) 509
BspPI GGATC 1 cut(s) 211
BspT107I GGYRCC 1 cut(s) 551
BspTNI GGTCTC 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 156
BsrGI TGTACA 1 cut(s) 526
BsrI ACTGG 2 cut(s) 189, 439
BssECI CCNNGG 3 cut(s) 273, 356, 468
BssMI GATC 3 cut(s) 216, 505, 593
BssT1I CCWWGG 1 cut(s) 356
Bst2UI CCWGG 2 cut(s) 470, 722
Bst4CI ACNGT 2 cut(s) 427, 538
BstAUI TGTACA 1 cut(s) 526
BstDEI CTNAG 2 cut(s) 227, 780
BstDSI CCRYGG 1 cut(s) 356
BstENI CCTNNNNNAGG 1 cut(s) 204
BstF5I GGATG 2 cut(s) 487, 689
BstKTI GATC 3 cut(s) 219, 508, 596
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 3 cut(s) 216, 505, 593
BstMCI CGRYCG 1 cut(s) 273
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNI CCWGG 2 cut(s) 470, 722
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 3 cut(s) 272, 468, 720
BstSLI GKGCMC 1 cut(s) 184
BstV1I GCAGC 1 cut(s) 758
BstV2I GAAGAC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 216
BstYI RGATCY 1 cut(s) 216
BstZI CGGCCG 1 cut(s) 270
BsuRI GGCC 2 cut(s) 263, 272
BtgI CCRYGG 1 cut(s) 356
BtsCI GGATG 2 cut(s) 487, 689
BtsIMutI CAGTG 2 cut(s) 182, 432
BveI ACCTGC 1 cut(s) 509
Csp6I GTAC 4 cut(s) 93, 142, 439, 527
CviAII CATG 8 cut(s) 31, 339, 357, 509, 515, 524, 548, 575
CviQI GTAC 4 cut(s) 93, 142, 439, 527
DdeI CTNAG 2 cut(s) 227, 780
DpnI GATC 3 cut(s) 218, 507, 595
DpnII GATC 3 cut(s) 216, 505, 593
DraIII CACNNNGTG 1 cut(s) 551
EaeI YGGCCR 1 cut(s) 270
EagI CGGCCG 1 cut(s) 270
EclXI CGGCCG 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 356
Eco147I AGGCCT 1 cut(s) 263
Eco31I GGTCTC 1 cut(s) 317
Eco32I GATATC 1 cut(s) 244
Eco52I CGGCCG 1 cut(s) 270
Eco57I CTGAAG 3 cut(s) 126, 333, 603
Eco88I CYCGRG 1 cut(s) 233
EcoNI CCTNNNNNAGG 1 cut(s) 204
EcoRII CCWGG 2 cut(s) 468, 720
EcoRV GATATC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 356
ErhI CCWWGG 1 cut(s) 356
FaeI CATG 8 cut(s) 34, 342, 360, 512, 518, 527, 551, 578
FatI CATG 8 cut(s) 30, 338, 356, 508, 514, 523, 547, 574
FauI CCCGC 1 cut(s) 79
FbaI TGATCA 1 cut(s) 505
Fnu4HI GCNGC 2 cut(s) 270, 772
FokI GGATG 2 cut(s) 494, 676
Fsp4HI GCNGC 2 cut(s) 270, 772
FspBI CTAG 4 cut(s) 149, 206, 284, 653
GluI GCNGC 2 cut(s) 270, 772
GsaI CCCAGC 1 cut(s) 647
HaeIII GGCC 2 cut(s) 263, 272
HapII CCGG 1 cut(s) 273
Hin1II CATG 8 cut(s) 34, 342, 360, 512, 518, 527, 551, 578
HincII GTYRAC 1 cut(s) 465
HindII GTYRAC 1 cut(s) 465
HindIII AAGCTT 2 cut(s) 15, 454
HinfI GANTC 4 cut(s) 101, 280, 366, 649
HpaII CCGG 1 cut(s) 273
HphI GGTGA 3 cut(s) 289, 327, 484
Hpy166II GTNNAC 3 cut(s) 93, 182, 465
Hpy188I TCNGA 5 cut(s) 106, 407, 583, 604, 761
Hpy188III TCNNGA 1 cut(s) 503
Hpy8I GTNNAC 3 cut(s) 93, 182, 465
HpyAV CCTTC 2 cut(s) 304, 382
HpyCH4III ACNGT 2 cut(s) 427, 538
HpyCH4V TGCA 4 cut(s) 182, 518, 689, 774
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 2 cut(s) 227, 780
Hsp92II CATG 8 cut(s) 34, 342, 360, 512, 518, 527, 551, 578
Ksp22I TGATCA 1 cut(s) 505
Kzo9I GATC 3 cut(s) 216, 505, 593
LmnI GCTCC 2 cut(s) 158, 640
Lsp1109I GCAGC 1 cut(s) 758
LweI GCATC 4 cut(s) 56, 698, 765, 783
MaeI CTAG 4 cut(s) 149, 206, 284, 653
MaeIII GTNAC 1 cut(s) 472
MalI GATC 3 cut(s) 218, 507, 595
MboI GATC 3 cut(s) 216, 505, 593
MboII GAAGA 7 cut(s) 49, 53, 119, 226, 238, 241, 596
MflI RGATCY 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 184
MluCI AATT 7 cut(s) 51, 57, 165, 587, 605, 669, 743
MmeI TCCRAC 1 cut(s) 618
MnlI CCTC 3 cut(s) 210, 726, 745
MseI TTAA 1 cut(s) 608
MslI CAYNNNNRTG 2 cut(s) 513, 546
MspI CCGG 1 cut(s) 273
MspR9I CCNGG 3 cut(s) 274, 470, 722
MvaI CCWGG 2 cut(s) 470, 722
MwoI GCNNNNNNNGC 1 cut(s) 269
NciI CCSGG 1 cut(s) 274
NcoI CCATGG 1 cut(s) 356
NdeII GATC 3 cut(s) 216, 505, 593
NlaIII CATG 8 cut(s) 34, 342, 360, 512, 518, 527, 551, 578
NlaIV GGNNCC 2 cut(s) 154, 553
NmuCI GTSAC 1 cut(s) 472
NspI RCATGY 1 cut(s) 34
PceI AGGCCT 1 cut(s) 263
PciI ACATGT 1 cut(s) 30
PfeI GAWTC 4 cut(s) 101, 280, 366, 649
PkrI GCNGC 2 cut(s) 271, 773
PscI ACATGT 1 cut(s) 30
PshBI ATTAAT 1 cut(s) 608
PsiI TTATAA 1 cut(s) 668
Psp6I CCWGG 2 cut(s) 468, 720
PspFI CCCAGC 1 cut(s) 643
PspGI CCWGG 2 cut(s) 468, 720
PspN4I GGNNCC 2 cut(s) 154, 553
PsuI RGATCY 1 cut(s) 216
RsaI GTAC 4 cut(s) 94, 143, 440, 528
RsaNI GTAC 4 cut(s) 93, 142, 439, 527
RseI CAYNNNNRTG 2 cut(s) 513, 546
SaqAI TTAA 1 cut(s) 608
SatI GCNGC 2 cut(s) 270, 772
Sau3AI GATC 3 cut(s) 216, 505, 593
ScrFI CCNGG 3 cut(s) 274, 470, 722
SduI GDGCHC 1 cut(s) 184
SfaNI GCATC 4 cut(s) 56, 698, 765, 783
SfiI GGCCNNNNNGGCC 1 cut(s) 269
SmiMI CAYNNNNRTG 2 cut(s) 513, 546
Sse9I AATT 7 cut(s) 51, 57, 165, 587, 605, 669, 743
SseBI AGGCCT 1 cut(s) 263
SsiI CCGC 2 cut(s) 72, 269
SspMI CTAG 4 cut(s) 149, 206, 284, 653
StuI AGGCCT 1 cut(s) 263
StyD4I CCNGG 3 cut(s) 272, 468, 720
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 2 cut(s) 427, 538
TasI AATT 7 cut(s) 51, 57, 165, 587, 605, 669, 743
TatI WGTACW 2 cut(s) 141, 526
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 4 cut(s) 101, 280, 366, 649
Tru1I TTAA 1 cut(s) 608
Tru9I TTAA 1 cut(s) 608
TscAI CASTG 2 cut(s) 189, 432
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 1 cut(s) 771
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 5 cut(s) 9, 144, 241, 286, 530
TspRI CASTG 2 cut(s) 189, 432
VneI GTGCAC 1 cut(s) 180
VspI ATTAAT 1 cut(s) 608
XagI CCTNNNNNAGG 1 cut(s) 204
XceI RCATGY 1 cut(s) 34
XspI CTAG 4 cut(s) 149, 206, 284, 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.