Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002306

Physical Location & Seq

Genomic Coordinates Forward (+)

16697764 .. 16699571

Gene Structure 1808 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032576

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGAGAAAGCGTACTCTATCTTCCACTCTTCTTCTTCTTTTGCTTTTCGTCCCCATCTTGGTTTCTGCAGAATGTACTTGCAGTGATGAATCCCAAGGTCGCGACAAGGGGGAGGCTCTCAAGTTCAAGCTAGTTGCAATAAGTTCAATCCTCATAGCCAGTGCTATTGGTGTCTCTCTTCCAATGTTGGGCAAGAAAATCCCAACTTTGCGTCCTGAAAATGATATTTTCTTCATGATCAAAGCCTTTGCAGCCGGTGTGATACTAGCCACCGGGTTCATCCATGTCTTGCCGGATGCATTTGAAAGCTTATCAAGCCCCTGCCTCAGCCAAAGGCCATGGGGGGATTTCCCGTTCACCGGCTTCATTGCAATGCTTTCGGCTATAGGAACGATGATGATCGACACCTTTGCTACTAGCTATTATAGGAGATCGCATTTCAATAAAGCACTGCCAGTGAAAGATGACCAAGAAATGAATGGCGTGCATGATGGTCATGTTCATGTTCATACTCATGCCACACATGGCCACGCCCATGGATCGGACGCGATAGTCTTGGAGGATTCATCGTCTTCTTTCGAGCTTGTCAGGCGTCGAATAATATCACAGGTCTTGGAGCTTGGGATTGTGGTTCATTCTGTGATCATTGGAGTTTCCTTAGGTGCCTCTCAGAGTCCCAAGACAATCAAGCCTCTAGTTGCAGCGCTGACATTCCATCAATTTTTTGAAGGCATGGGCCTTGGTGGTTGCATCTGTCAGGCCAACTTCAAGTCGAAGGCCATTGCAACTATGGTACTTTTCTTCTCCCTCACCACCCCAATTGGAATAGGTGTTGGAATGGGGGTGTCAAGTTTTTACAAGGAGAACAGCAGTGCTGCTCTGATTGTGGAAGGAGTATTCAACTCTGCTTCAGCTGGGATCCTAATCTACATGGCTCTGGTTGACCTTCTAGCAGCTGACTTTATGAATCCTAGAATGCAGAGCAATCTTAGGATCCAGCTTGGGGCTAATCTTTCACTTGTTTTAGGGTCAGGATGTATGTCTCTCTTGGCCAAATGGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

355

Amino Acids

37.99

Weight (kDa)

8.21

Isoelectric Point (pI)

36.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	41 - 351	1.6e-83	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12750
fragaria_vesca	FvH4_3g12900 FvH4_3g14490 FvH4_3g14490
malus_domestica	MD05G1236500.v1.1 MD05G1236600.v1.1 MD05G1247200.v1.1 MD10G1227800.v1.1
prunus_persica	Prupe.4G117200_v2.0.a1 Prupe.4G129600_v2.0.a1 Prupe.4G129700_v2.0.a1
pyrus_communis	pycom05g21350 pycom05g22310 pycom10g19130
rosa_chinensis	RchiOBHm_Chr5g0021001 RchiOBHm_Chr5g0023861 RchiOBHm_Chr5g0023871
rosa_laevigata	RLG00000032576 RLG00000032741 RLG00000032742
rosa_multiflora	Rmu_sc0001372.1_g000002 Rmu_sc0001372.1_g000005 Rmu_ssc0000027.1_g000003 Rmu_ssc0000244.1_g000011
rosa_roxburghii	Rroxscaffold_1G00055380 Rroxscaffold_1G00057480
rosa_rugosa	Rorug05G0063700 Rorug05G0079800 Rorug05G0079900
rosa_samantha	Rh5AG153300 Rh5AG169900 Rh5AG170000 Rh5BG153000 Rh5BG167200 Rh5BG167300 Rh5CG165600 Rh5CG182800 Rh5DG152400 Rh5DG169300
rosa_wichuraiana	Rw5G013620 Rw5G015360 Rw5G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	551
AccB1I	GGYRCC	1 cut(s)	662
AccII	CGCG	2 cut(s)	102, 548
AclWI	GGATC	5 cut(s)	547, 913, 926, 988, 1001
AcoI	YGGCCR	2 cut(s)	526, 1050
AcuI	CTGAAG	1 cut(s)	894
AcyI	GRCGYC	1 cut(s)	592
AfaI	GTAC	3 cut(s)	13, 76, 795
AfeI	AGCGCT	1 cut(s)	705
AfiI	CCNNNNNNNGG	5 cut(s)	58, 188, 359, 541, 1003
AgsI	TTSAA	7 cut(s)	127, 147, 305, 442, 728, 769, 901
AloI	GAACNNNNNNTCC	2 cut(s)	338, 370
AluBI	AGCT	8 cut(s)	130, 309, 420, 583, 619, 914, 956, 1000
AluI	AGCT	8 cut(s)	130, 309, 420, 583, 619, 914, 956, 1000
Alw26I	GTCTC	2 cut(s)	178, 1047
AlwI	GGATC	5 cut(s)	547, 913, 926, 988, 1001
Aor51HI	AGCGCT	1 cut(s)	705
AoxI	GGCC	6 cut(s)	335, 526, 736, 759, 777, 1050
ApeKI	GCWGC	4 cut(s)	251, 701, 875, 953
AspLEI	GCGC	1 cut(s)	706
AspS9I	GGNCC	1 cut(s)	736
AsuC2I	CCSGG	1 cut(s)	274
AsuHPI	GGTGA	2 cut(s)	349, 802
AxyI	CCTNAGG	1 cut(s)	658
BalI	TGGCCA	2 cut(s)	528, 1052
BamHI	GGATCC	2 cut(s)	918, 993
BanI	GGYRCC	1 cut(s)	662
BarI	GAAGNNNNNNTAC	1 cut(s)	36
BbsI	GAAGAC	1 cut(s)	564
BbvCI	CCTCAGC	1 cut(s)	326
BbvI	GCAGC	4 cut(s)	263, 713, 862, 965
BccI	CCATC	3 cut(s)	62, 485, 723
BcgI	CGANNNNNNTGC	4 cut(s)	360, 392, 394, 426
BclI	TGATCA	2 cut(s)	237, 642
BcnI	CCSGG	1 cut(s)	274
BcoDI	GTCTC	2 cut(s)	178, 1047
BfaI	CTAG	6 cut(s)	131, 266, 417, 695, 950, 972
BfmI	CTRYAG	2 cut(s)	66, 384
BfoI	RGCGCY	1 cut(s)	707
BglI	GCCNNNNNGGC	1 cut(s)	1058
BisI	GCNGC	4 cut(s)	252, 702, 876, 954
BlsI	GCNGC	4 cut(s)	253, 703, 877, 955
Bme1390I	CCNGG	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	736
BmiI	GGNNCC	3 cut(s)	664, 920, 995
BmrFI	CCNGG	1 cut(s)	274
BmsI	GCATC	2 cut(s)	286, 759
BpiI	GAAGAC	1 cut(s)	564
Bpu10I	CCTNAGC	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	274
BsaBI	GATNNNNATC	2 cut(s)	398, 923
BsaHI	GRCGYC	1 cut(s)	592
BsaJI	CCNNGG	4 cut(s)	94, 338, 535, 739
Bsc4I	CCNNNNNNNGG	5 cut(s)	58, 188, 359, 541, 1003
Bse118I	RCCGGY	2 cut(s)	254, 359
Bse1I	ACTGG	2 cut(s)	159, 455
Bse21I	CCTNAGG	1 cut(s)	658
Bse3DI	GCAATG	3 cut(s)	366, 378, 780
Bse8I	GATNNNNATC	2 cut(s)	398, 923
BseDI	CCNNGG	4 cut(s)	94, 338, 535, 739
BseGI	GGATG	3 cut(s)	279, 301, 1040
BseJI	GATNNNNATC	2 cut(s)	398, 923
BseLI	CCNNNNNNNGG	5 cut(s)	58, 188, 359, 541, 1003
BseMI	GCAATG	3 cut(s)	366, 378, 780
BseMII	CTCAG	2 cut(s)	340, 683
BseNI	ACTGG	2 cut(s)	159, 455
BseXI	GCAGC	4 cut(s)	263, 713, 862, 965
BseYI	CCCAGC	1 cut(s)	914
Bsh1236I	CGCG	2 cut(s)	102, 548
BshFI	GGCC	6 cut(s)	337, 528, 738, 761, 779, 1052
BshNI	GGYRCC	1 cut(s)	662
BsiSI	CCGG	4 cut(s)	255, 273, 293, 360
BslFI	GGGAC	2 cut(s)	35, 660
BslI	CCNNNNNNNGG	5 cut(s)	58, 188, 359, 541, 1003
BsmAI	GTCTC	2 cut(s)	178, 1047
BsmFI	GGGAC	2 cut(s)	35, 660
BsmI	GAATGC	1 cut(s)	981
BsnI	GGCC	6 cut(s)	337, 528, 738, 761, 779, 1052
Bsp143I	GATC	7 cut(s)	237, 399, 431, 539, 642, 918, 993
Bsp19I	CCATGG	2 cut(s)	338, 535
Bsp68I	TCGCGA	1 cut(s)	102
BspANI	GGCC	6 cut(s)	337, 528, 738, 761, 779, 1052
BspCNI	CTCAG	2 cut(s)	339, 682
BspFNI	CGCG	2 cut(s)	102, 548
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	3 cut(s)	664, 920, 995
BspMAI	CTGCAG	1 cut(s)	70
BspPI	GGATC	5 cut(s)	547, 913, 926, 988, 1001
BspT107I	GGYRCC	1 cut(s)	662
BsrDI	GCAATG	3 cut(s)	366, 378, 780
BsrFI	RCCGGY	2 cut(s)	254, 359
BsrI	ACTGG	2 cut(s)	159, 455
BssAI	RCCGGY	2 cut(s)	254, 359
BssECI	CCNNGG	4 cut(s)	94, 338, 535, 739
BssMI	GATC	7 cut(s)	237, 399, 431, 539, 642, 918, 993
BssNI	GRCGYC	1 cut(s)	592
BssT1I	CCWWGG	4 cut(s)	94, 338, 535, 739
Bst6I	CTCTTC	2 cut(s)	33, 183
BstACI	GRCGYC	1 cut(s)	592
BstC8I	GCNNGC	1 cut(s)	485
BstDEI	CTNAG	4 cut(s)	326, 658, 669, 989
BstDSI	CCRYGG	2 cut(s)	338, 535
BstF5I	GGATG	3 cut(s)	279, 301, 1040
BstFNI	CGCG	2 cut(s)	102, 548
BstH2I	RGCGCY	1 cut(s)	707
BstHHI	GCGC	1 cut(s)	706
BstKTI	GATC	7 cut(s)	240, 402, 434, 542, 645, 921, 996
BstMAI	GTCTC	2 cut(s)	178, 1047
BstMBI	GATC	7 cut(s)	237, 399, 431, 539, 642, 918, 993
BstMWI	GCNNNNNNNGC	4 cut(s)	251, 315, 589, 1058
BstSCI	CCNGG	1 cut(s)	272
BstSFI	CTRYAG	2 cut(s)	66, 384
BstUI	CGCG	2 cut(s)	102, 548
BstV1I	GCAGC	4 cut(s)	263, 713, 862, 965
BstV2I	GAAGAC	1 cut(s)	564
BstX2I	RGATCY	2 cut(s)	918, 993
BstXI	CCANNNNNNTGG	1 cut(s)	536
BstYI	RGATCY	2 cut(s)	918, 993
Bsu36I	CCTNAGG	1 cut(s)	658
BsuRI	GGCC	6 cut(s)	337, 528, 738, 761, 779, 1052
BtgI	CCRYGG	2 cut(s)	338, 535
BtsCI	GGATG	3 cut(s)	279, 301, 1040
BtsI	GCAGTG	3 cut(s)	88, 449, 877
BtsIMutI	CAGTG	5 cut(s)	88, 166, 449, 462, 877
BtuMI	TCGCGA	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	485
CciI	TCATGA	1 cut(s)	234
CfoI	GCGC	1 cut(s)	706
Cfr10I	RCCGGY	2 cut(s)	254, 359
Cfr13I	GGNCC	1 cut(s)	736
CseI	GACGC	3 cut(s)	200, 554, 581
Csp6I	GTAC	3 cut(s)	12, 75, 794
CspCI	CAANNNNNGTGG	2 cut(s)	802, 837
CviQI	GTAC	3 cut(s)	12, 75, 794
DdeI	CTNAG	4 cut(s)	326, 658, 669, 989
DpnI	GATC	7 cut(s)	239, 401, 433, 541, 644, 920, 995
DpnII	GATC	7 cut(s)	237, 399, 431, 539, 642, 918, 993
DrdI	GACNNNNNNGTC	1 cut(s)	551
DseDI	GACNNNNNNGTC	1 cut(s)	551
EaeI	YGGCCR	2 cut(s)	526, 1050
Eam1104I	CTCTTC	2 cut(s)	33, 183
EarI	CTCTTC	2 cut(s)	33, 183
Eco130I	CCWWGG	4 cut(s)	94, 338, 535, 739
Eco47III	AGCGCT	1 cut(s)	705
Eco57I	CTGAAG	1 cut(s)	894
Eco81I	CCTNAGG	1 cut(s)	658
EcoT14I	CCWWGG	4 cut(s)	94, 338, 535, 739
EcoT22I	ATGCAT	1 cut(s)	301
ErhI	CCWWGG	4 cut(s)	94, 338, 535, 739
FaqI	GGGAC	2 cut(s)	35, 660
FbaI	TGATCA	2 cut(s)	237, 642
Fnu4HI	GCNGC	4 cut(s)	252, 702, 876, 954
FokI	GGATG	3 cut(s)	266, 308, 1047
Fsp4HI	GCNGC	4 cut(s)	252, 702, 876, 954
FspBI	CTAG	6 cut(s)	131, 266, 417, 695, 950, 972
GlaI	GCGC	1 cut(s)	705
GluI	GCNGC	4 cut(s)	252, 702, 876, 954
GsaI	CCCAGC	1 cut(s)	918
HaeII	RGCGCY	1 cut(s)	707
HaeIII	GGCC	6 cut(s)	337, 528, 738, 761, 779, 1052
HapII	CCGG	4 cut(s)	255, 273, 293, 360
HgaI	GACGC	3 cut(s)	200, 554, 581
HhaI	GCGC	1 cut(s)	706
Hin1I	GRCGYC	1 cut(s)	592
Hin6I	GCGC	1 cut(s)	704
HinP1I	GCGC	1 cut(s)	704
HincII	GTYRAC	1 cut(s)	943
HindII	GTYRAC	1 cut(s)	943
HindIII	AAGCTT	1 cut(s)	307
HinfI	GANTC	4 cut(s)	89, 563, 673, 967
HpaII	CCGG	4 cut(s)	255, 273, 293, 360
HphI	GGTGA	2 cut(s)	349, 802
Hpy166II	GTNNAC	2 cut(s)	357, 943
Hpy188I	TCNGA	3 cut(s)	544, 672, 882
Hpy188III	TCNNGA	4 cut(s)	101, 215, 235, 1032
Hpy8I	GTNNAC	2 cut(s)	357, 943
Hpy99I	CGWCG	1 cut(s)	597
HpyAV	CCTTC	4 cut(s)	722, 769, 884, 956
HpyF10VI	GCNNNNNNNGC	4 cut(s)	251, 315, 589, 1058
HpyF3I	CTNAG	4 cut(s)	326, 658, 669, 989
Hsp92I	GRCGYC	1 cut(s)	592
HspAI	GCGC	1 cut(s)	704
Ksp22I	TGATCA	2 cut(s)	237, 642
Kzo9I	GATC	7 cut(s)	237, 399, 431, 539, 642, 918, 993
LmnI	GCTCC	1 cut(s)	616
Lsp1109I	GCAGC	4 cut(s)	263, 713, 862, 965
LweI	GCATC	2 cut(s)	286, 759
MaeI	CTAG	6 cut(s)	131, 266, 417, 695, 950, 972
MalI	GATC	7 cut(s)	239, 401, 433, 541, 644, 920, 995
MboI	GATC	7 cut(s)	237, 399, 431, 539, 642, 918, 993
MboII	GAAGA	8 cut(s)	12, 20, 23, 26, 170, 223, 564, 793
MfeI	CAATTG	1 cut(s)	819
MflI	RGATCY	2 cut(s)	918, 993
MlsI	TGGCCA	2 cut(s)	528, 1052
MluCI	AATT	2 cut(s)	719, 819
MluNI	TGGCCA	2 cut(s)	528, 1052
MlyI	GAGTC	1 cut(s)	682
MmeI	TCCRAC	1 cut(s)	814
MnlI	CCTC	7 cut(s)	106, 161, 335, 553, 676, 702, 818
Mox20I	TGGCCA	2 cut(s)	528, 1052
Mph1103I	ATGCAT	1 cut(s)	301
MscI	TGGCCA	2 cut(s)	528, 1052
MslI	CAYNNNNRTG	4 cut(s)	371, 501, 513, 534
Msp20I	TGGCCA	2 cut(s)	528, 1052
MspA1I	CMGCKG	2 cut(s)	914, 956
MspI	CCGG	4 cut(s)	255, 273, 293, 360
MspR9I	CCNGG	1 cut(s)	274
MunI	CAATTG	1 cut(s)	819
Mva1269I	GAATGC	1 cut(s)	981
MvnI	CGCG	2 cut(s)	102, 548
MwoI	GCNNNNNNNGC	4 cut(s)	251, 315, 589, 1058
NciI	CCSGG	1 cut(s)	274
NcoI	CCATGG	2 cut(s)	338, 535
NdeII	GATC	7 cut(s)	237, 399, 431, 539, 642, 918, 993
NlaIV	GGNNCC	3 cut(s)	664, 920, 995
NruI	TCGCGA	1 cut(s)	102
NsiI	ATGCAT	1 cut(s)	301
PagI	TCATGA	1 cut(s)	234
PctI	GAATGC	1 cut(s)	981
PfeI	GAWTC	3 cut(s)	89, 563, 967
PkrI	GCNGC	4 cut(s)	253, 703, 877, 955
PleI	GAGTC	1 cut(s)	681
PpsI	GAGTC	1 cut(s)	681
PspFI	CCCAGC	1 cut(s)	914
PspN4I	GGNNCC	3 cut(s)	664, 920, 995
PspPI	GGNCC	1 cut(s)	736
PstI	CTGCAG	1 cut(s)	70
PsuI	RGATCY	2 cut(s)	918, 993
PvuII	CAGCTG	2 cut(s)	914, 956
RruI	TCGCGA	1 cut(s)	102
RsaI	GTAC	3 cut(s)	13, 76, 795
RsaNI	GTAC	3 cut(s)	12, 75, 794
RseI	CAYNNNNRTG	4 cut(s)	371, 501, 513, 534
SatI	GCNGC	4 cut(s)	252, 702, 876, 954
Sau3AI	GATC	7 cut(s)	237, 399, 431, 539, 642, 918, 993
Sau96I	GGNCC	1 cut(s)	736
SchI	GAGTC	1 cut(s)	682
ScrFI	CCNGG	1 cut(s)	274
SfaNI	GCATC	2 cut(s)	286, 759
SfcI	CTRYAG	2 cut(s)	66, 384
SmiMI	CAYNNNNRTG	4 cut(s)	371, 501, 513, 534
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	2 cut(s)	719, 819
SspMI	CTAG	6 cut(s)	131, 266, 417, 695, 950, 972
StyD4I	CCNGG	1 cut(s)	272
StyI	CCWWGG	4 cut(s)	94, 338, 535, 739
TaqI	TCGA	4 cut(s)	402, 579, 595, 773
TasI	AATT	2 cut(s)	719, 819
TatI	WGTACW	1 cut(s)	74
TfiI	GAWTC	3 cut(s)	89, 563, 967
TscAI	CASTG	5 cut(s)	88, 166, 456, 462, 877
TseI	GCWGC	4 cut(s)	251, 701, 875, 953
TspRI	CASTG	5 cut(s)	88, 166, 456, 462, 877
XcmI	CCANNNNNNNNNTGG	2 cut(s)	476, 787
XspI	CTAG	6 cut(s)	131, 266, 417, 695, 950, 972
Zsp2I	ATGCAT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.