Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002306

Physical Location & Seq

Genomic Coordinates Reverse (-)

18794801 .. 18796583

Gene Structure 1783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG169900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTTTATTCTTCAAGCTTCATCTTTGAACATGTTAAAGATAGTGGCATCAATTCTAATTCTTCTATTCCCCGCAATAGTATTTGGAGAGTGTACCTGTGAATCTGAAGACATACAGGACAACAACGATGAAGCACTAAAGTACAAGCTAGGCTCCATTGCTTCAATTCTTGTTTCGGGTGCTTTGGGGGTAAGTCTGCCGCTGCTAGGCAAGAAGATCCCAACTCTAAGACCCGAGAACGATATCTTCTTCTTTGTCAAGGCCTTTGCGGCTGGGGTGATTCTAGCGACTGCCTTCATTCACATACTACCTGAAGCCTTTGAGACCTTGACTTCACCATGCCTAAAAGAAAATCCATGGGGCAGATTCCCTTTCACAGGCTTTGTGTGTATGATGTCTGCCATCGGAACATTGATGGTTGATACAGTGGCAACTGGGTACTACAAAAGGTCAAGCTTGAAGTCAACCCAGGTGACAATGGATGTAGAGAACATAGCTGGTCATGCAGGTCATGTACATCATACTGTTCATACACATGGTGCCACACAGGGTAGTAATGCTCATGGCTCTGAAGAATTGAGATCATCATCAGAATTAATCAGGCATAGAGTCATTTCACAAGTGTTGGAGCTGGGGATTCTAGTCCATTCAGTTATAATTGGAATAACATTGGGTGCATCCCGAAACCCAGATACAATAAAGCCTCTCCTGGTGGCTTTGTCTTTCCATCAATTCTTTGAGGGCATCGGACTTGGTGGCTGCATCTCTCAGGCAAAGTTTAAGGTTCGGTCTGCAGCCATAATGGCGGCATTTTTCTCCCTTACAACCCCCATTGGGATTGCAGTTGGTACCGGAATTTCAAGCGTTTACAGTGAGACTAGCCCAACTGCTCTAATTGTTCAAGGGACTTTGGATTCAGCTGCAGCTGGGATTTTAATTTACATGGCTCTTGTTGACCTACTTGCAGCAGATTTCATGAGCCCTAGAATGCAAGGAAATATGAGGATTCAATTGGGGTCATATATCTCACTTCTTCTAGGGACTGGCTGTATGTCTCTCTTGGCGAAATGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

358

Amino Acids

38.18

Weight (kDa)

6.59

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	47 - 355	4.2e-83	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12750
fragaria_vesca	FvH4_3g12900 FvH4_3g14490 FvH4_3g14490
malus_domestica	MD05G1236500.v1.1 MD05G1236600.v1.1 MD05G1247200.v1.1 MD10G1227800.v1.1
prunus_persica	Prupe.4G117200_v2.0.a1 Prupe.4G129600_v2.0.a1 Prupe.4G129700_v2.0.a1
pyrus_communis	pycom05g21350 pycom05g22310 pycom10g19130
rosa_chinensis	RchiOBHm_Chr5g0021001 RchiOBHm_Chr5g0023861 RchiOBHm_Chr5g0023871
rosa_laevigata	RLG00000032576 RLG00000032741 RLG00000032742
rosa_multiflora	Rmu_sc0001372.1_g000002 Rmu_sc0001372.1_g000005 Rmu_ssc0000027.1_g000003 Rmu_ssc0000244.1_g000011
rosa_roxburghii	Rroxscaffold_1G00055380 Rroxscaffold_1G00057480
rosa_rugosa	Rorug05G0063700 Rorug05G0079800 Rorug05G0079900
rosa_samantha	Rh5AG153300 Rh5AG169900 Rh5AG170000 Rh5BG153000 Rh5BG167200 Rh5BG167300 Rh5CG165600 Rh5CG182800 Rh5DG152400 Rh5DG169300
rosa_wichuraiana	Rw5G013620 Rw5G015360 Rw5G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	656
Acc36I	ACCTGC	1 cut(s)	497
Acc65I	GGTACC	1 cut(s)	848
AccB1I	GGYRCC	2 cut(s)	539, 848
AciI	CCGC	4 cut(s)	72, 200, 269, 806
AclWI	GGATC	1 cut(s)	211
AcsI	RAATTY	1 cut(s)	855
AcuI	CTGAAG	3 cut(s)	126, 333, 591
AdeI	CACNNNGTG	1 cut(s)	539
AfaI	GTAC	5 cut(s)	94, 143, 440, 516, 850
AfiI	CCNNNNNNNGG	3 cut(s)	206, 377, 834
AflIII	ACRYGT	1 cut(s)	30
AgsI	TTSAA	7 cut(s)	14, 28, 165, 460, 861, 902, 1010
AjnI	CCWGG	2 cut(s)	468, 708
AluBI	AGCT	7 cut(s)	17, 148, 456, 497, 631, 920, 926
AluI	AGCT	7 cut(s)	17, 148, 456, 497, 631, 920, 926
Alw26I	GTCTC	3 cut(s)	317, 869, 1059
AlwI	GGATC	1 cut(s)	211
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	6 cut(s)	202, 759, 794, 920, 923, 965
ApoI	RAATTY	1 cut(s)	855
AseI	ATTAAT	1 cut(s)	596
Asp718I	GGTACC	1 cut(s)	848
AsuHPI	GGTGA	3 cut(s)	289, 327, 484
AvaI	CYCGRG	1 cut(s)	233
BanI	GGYRCC	2 cut(s)	539, 848
BanII	GRGCYC	1 cut(s)	983
BbsI	GAAGAC	1 cut(s)	114
BbvI	GCAGC	6 cut(s)	189, 746, 806, 907, 935, 977
BccI	CCATC	3 cut(s)	409, 410, 735
BciT130I	CCWGG	2 cut(s)	470, 710
BcoDI	GTCTC	3 cut(s)	317, 869, 1059
BfaI	CTAG	7 cut(s)	149, 206, 284, 641, 879, 984, 1037
BfmI	CTRYAG	2 cut(s)	792, 921
BfuAI	ACCTGC	1 cut(s)	497
BglI	GCCNNNNNGGC	2 cut(s)	269, 803
BisI	GCNGC	9 cut(s)	200, 203, 270, 760, 795, 807, 921, 924, 966
BlsI	GCNGC	9 cut(s)	201, 204, 271, 761, 796, 808, 922, 925, 967
Bme1390I	CCNGG	2 cut(s)	470, 710
BmeT110I	CYCGRG	1 cut(s)	233
BmiI	GGNNCC	3 cut(s)	154, 541, 850
BmrFI	CCNGG	2 cut(s)	470, 710
BmrI	ACTGGG	1 cut(s)	444
BmsI	GCATC	4 cut(s)	56, 686, 753, 771
BmuI	ACTGGG	1 cut(s)	444
BpiI	GAAGAC	1 cut(s)	114
BsaBI	GATNNNNATC	1 cut(s)	586
BsaI	GGTCTC	1 cut(s)	317
BsaJI	CCNNGG	2 cut(s)	356, 468
BsaWI	WCCGGW	1 cut(s)	851
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 377, 834
Bse1I	ACTGG	2 cut(s)	439, 1048
Bse3DI	GCAATG	1 cut(s)	156
Bse8I	GATNNNNATC	1 cut(s)	586
BseBI	CCWGG	2 cut(s)	470, 710
BseDI	CCNNGG	2 cut(s)	356, 468
BseGI	GGATG	2 cut(s)	487, 677
BseJI	GATNNNNATC	1 cut(s)	586
BseLI	CCNNNNNNNGG	3 cut(s)	206, 377, 834
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	782
BseNI	ACTGG	2 cut(s)	439, 1048
BseXI	GCAGC	6 cut(s)	189, 746, 806, 907, 935, 977
BseYI	CCCAGC	3 cut(s)	272, 631, 926
BshFI	GGCC	1 cut(s)	263
BshNI	GGYRCC	2 cut(s)	539, 848
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	852
BslFI	GGGAC	2 cut(s)	919, 1054
BslI	CCNNNNNNNGG	3 cut(s)	206, 377, 834
BsmAI	GTCTC	3 cut(s)	317, 869, 1059
BsmFI	GGGAC	2 cut(s)	919, 1054
BsmI	GAATGC	1 cut(s)	993
BsnI	GGCC	1 cut(s)	263
Bso31I	GGTCTC	1 cut(s)	317
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	983
Bsp1407I	TGTACA	1 cut(s)	514
Bsp143I	GATC	2 cut(s)	216, 581
Bsp19I	CCATGG	1 cut(s)	356
BspACI	CCGC	4 cut(s)	72, 200, 269, 806
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	1 cut(s)	781
BspHI	TCATGA	1 cut(s)	975
BspLI	GGNNCC	3 cut(s)	154, 541, 850
BspMAI	CTGCAG	2 cut(s)	796, 925
BspMI	ACCTGC	1 cut(s)	497
BspPI	GGATC	1 cut(s)	211
BspT107I	GGYRCC	2 cut(s)	539, 848
BspTNI	GGTCTC	1 cut(s)	317
BsrDI	GCAATG	1 cut(s)	156
BsrGI	TGTACA	1 cut(s)	514
BsrI	ACTGG	2 cut(s)	439, 1048
BssECI	CCNNGG	2 cut(s)	356, 468
BssMI	GATC	2 cut(s)	216, 581
BssT1I	CCWWGG	1 cut(s)	356
Bst2UI	CCWGG	2 cut(s)	470, 710
Bst4CI	ACNGT	3 cut(s)	427, 526, 872
BstAUI	TGTACA	1 cut(s)	514
BstDEI	CTNAG	2 cut(s)	227, 768
BstDSI	CCRYGG	1 cut(s)	356
BstENI	CCTNNNNNAGG	1 cut(s)	375
BstF5I	GGATG	2 cut(s)	487, 677
BstKTI	GATC	2 cut(s)	219, 584
BstMAI	GTCTC	3 cut(s)	317, 869, 1059
BstMBI	GATC	2 cut(s)	216, 581
BstMWI	GCNNNNNNNGC	4 cut(s)	269, 503, 803, 1070
BstNI	CCWGG	2 cut(s)	470, 710
BstNSI	RCATGY	1 cut(s)	34
BstSCI	CCNGG	2 cut(s)	468, 708
BstSFI	CTRYAG	2 cut(s)	792, 921
BstV1I	GCAGC	6 cut(s)	189, 746, 806, 907, 935, 977
BstV2I	GAAGAC	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	263
BtgI	CCRYGG	1 cut(s)	356
BtsCI	GGATG	2 cut(s)	487, 677
BtsIMutI	CAGTG	2 cut(s)	432, 877
BveI	ACCTGC	1 cut(s)	497
CciI	TCATGA	1 cut(s)	975
Csp6I	GTAC	5 cut(s)	93, 142, 439, 515, 849
CviAII	CATG	9 cut(s)	31, 339, 357, 503, 512, 536, 563, 943, 976
CviQI	GTAC	5 cut(s)	93, 142, 439, 515, 849
DdeI	CTNAG	2 cut(s)	227, 768
DpnI	GATC	2 cut(s)	218, 583
DpnII	GATC	2 cut(s)	216, 581
DraIII	CACNNNGTG	1 cut(s)	539
Eco130I	CCWWGG	1 cut(s)	356
Eco147I	AGGCCT	1 cut(s)	263
Eco24I	GRGCYC	1 cut(s)	983
Eco31I	GGTCTC	1 cut(s)	317
Eco32I	GATATC	1 cut(s)	244
Eco57I	CTGAAG	3 cut(s)	126, 333, 591
Eco88I	CYCGRG	1 cut(s)	233
EcoNI	CCTNNNNNAGG	1 cut(s)	375
EcoRII	CCWGG	2 cut(s)	468, 708
EcoRV	GATATC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	356
EcoT38I	GRGCYC	1 cut(s)	983
ErhI	CCWWGG	1 cut(s)	356
FaeI	CATG	9 cut(s)	34, 342, 360, 506, 515, 539, 566, 946, 979
FaqI	GGGAC	2 cut(s)	919, 1054
FatI	CATG	9 cut(s)	30, 338, 356, 502, 511, 535, 562, 942, 975
FauI	CCCGC	1 cut(s)	79
Fnu4HI	GCNGC	9 cut(s)	200, 203, 270, 760, 795, 807, 921, 924, 966
FokI	GGATG	2 cut(s)	494, 664
FriOI	GRGCYC	1 cut(s)	983
Fsp4HI	GCNGC	9 cut(s)	200, 203, 270, 760, 795, 807, 921, 924, 966
FspBI	CTAG	7 cut(s)	149, 206, 284, 641, 879, 984, 1037
GluI	GCNGC	9 cut(s)	200, 203, 270, 760, 795, 807, 921, 924, 966
GsaI	CCCAGC	3 cut(s)	276, 635, 930
HaeIII	GGCC	1 cut(s)	263
HapII	CCGG	1 cut(s)	852
Hin1II	CATG	9 cut(s)	34, 342, 360, 506, 515, 539, 566, 946, 979
HincII	GTYRAC	2 cut(s)	465, 955
HindII	GTYRAC	2 cut(s)	465, 955
HindIII	AAGCTT	2 cut(s)	15, 454
HinfI	GANTC	7 cut(s)	101, 280, 366, 609, 637, 914, 1006
HpaII	CCGG	1 cut(s)	852
HphI	GGTGA	3 cut(s)	289, 327, 484
Hpy166II	GTNNAC	4 cut(s)	93, 465, 868, 955
Hpy188I	TCNGA	5 cut(s)	106, 407, 571, 592, 749
Hpy188III	TCNNGA	2 cut(s)	681, 976
Hpy8I	GTNNAC	4 cut(s)	93, 465, 868, 955
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	3 cut(s)	427, 526, 872
HpyCH4V	TGCA	8 cut(s)	506, 677, 762, 794, 842, 923, 965, 991
HpyF10VI	GCNNNNNNNGC	4 cut(s)	269, 503, 803, 1070
HpyF3I	CTNAG	2 cut(s)	227, 768
Hsp92II	CATG	9 cut(s)	34, 342, 360, 506, 515, 539, 566, 946, 979
KpnI	GGTACC	1 cut(s)	852
Kzo9I	GATC	2 cut(s)	216, 581
LmnI	GCTCC	2 cut(s)	158, 628
Lsp1109I	GCAGC	6 cut(s)	189, 746, 806, 907, 935, 977
LweI	GCATC	4 cut(s)	56, 686, 753, 771
MaeI	CTAG	7 cut(s)	149, 206, 284, 641, 879, 984, 1037
MaeIII	GTNAC	1 cut(s)	472
MalI	GATC	2 cut(s)	218, 583
MboI	GATC	2 cut(s)	216, 581
MboII	GAAGA	7 cut(s)	53, 119, 226, 238, 241, 584, 1025
MfeI	CAATTG	1 cut(s)	1010
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	1 cut(s)	983
MlyI	GAGTC	1 cut(s)	618
MmeI	TCCRAC	1 cut(s)	606
MnlI	CCTC	3 cut(s)	714, 733, 996
MseI	TTAA	4 cut(s)	35, 596, 780, 935
MslI	CAYNNNNRTG	1 cut(s)	534
MspA1I	CMGCKG	3 cut(s)	202, 920, 926
MspI	CCGG	1 cut(s)	852
MspR9I	CCNGG	2 cut(s)	470, 710
MunI	CAATTG	1 cut(s)	1010
Mva1269I	GAATGC	1 cut(s)	993
MvaI	CCWGG	2 cut(s)	470, 710
MwoI	GCNNNNNNNGC	4 cut(s)	269, 503, 803, 1070
NcoI	CCATGG	1 cut(s)	356
NdeII	GATC	2 cut(s)	216, 581
NlaIII	CATG	9 cut(s)	34, 342, 360, 506, 515, 539, 566, 946, 979
NlaIV	GGNNCC	3 cut(s)	154, 541, 850
NmuCI	GTSAC	1 cut(s)	472
NspI	RCATGY	1 cut(s)	34
PagI	TCATGA	1 cut(s)	975
PceI	AGGCCT	1 cut(s)	263
PciI	ACATGT	1 cut(s)	30
PctI	GAATGC	1 cut(s)	993
PfeI	GAWTC	6 cut(s)	101, 280, 366, 637, 914, 1006
PkrI	GCNGC	9 cut(s)	201, 204, 271, 761, 796, 808, 922, 925, 967
PleI	GAGTC	1 cut(s)	617
PpsI	GAGTC	1 cut(s)	617
PscI	ACATGT	1 cut(s)	30
PshBI	ATTAAT	1 cut(s)	596
PsiI	TTATAA	1 cut(s)	656
Psp6I	CCWGG	2 cut(s)	468, 708
PspFI	CCCAGC	3 cut(s)	272, 631, 926
PspGI	CCWGG	2 cut(s)	468, 708
PspN4I	GGNNCC	3 cut(s)	154, 541, 850
PstI	CTGCAG	2 cut(s)	796, 925
PsuI	RGATCY	1 cut(s)	216
PvuII	CAGCTG	2 cut(s)	920, 926
RsaI	GTAC	5 cut(s)	94, 143, 440, 516, 850
RsaNI	GTAC	5 cut(s)	93, 142, 439, 515, 849
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	4 cut(s)	35, 596, 780, 935
SatI	GCNGC	9 cut(s)	200, 203, 270, 760, 795, 807, 921, 924, 966
Sau3AI	GATC	2 cut(s)	216, 581
SchI	GAGTC	1 cut(s)	618
ScrFI	CCNGG	2 cut(s)	470, 710
SduI	GDGCHC	1 cut(s)	983
SfaNI	GCATC	4 cut(s)	56, 686, 753, 771
SfcI	CTRYAG	2 cut(s)	792, 921
SmiMI	CAYNNNNRTG	1 cut(s)	534
SseBI	AGGCCT	1 cut(s)	263
SsiI	CCGC	4 cut(s)	72, 200, 269, 806
SspMI	CTAG	7 cut(s)	149, 206, 284, 641, 879, 984, 1037
StuI	AGGCCT	1 cut(s)	263
StyD4I	CCNGG	2 cut(s)	468, 708
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	3 cut(s)	427, 526, 872
TaqII	GACCGA	1 cut(s)	777
TatI	WGTACW	2 cut(s)	141, 514
TauI	GCSGC	3 cut(s)	202, 272, 809
TfiI	GAWTC	6 cut(s)	101, 280, 366, 637, 914, 1006
Tru1I	TTAA	4 cut(s)	35, 596, 780, 935
Tru9I	TTAA	4 cut(s)	35, 596, 780, 935
TscAI	CASTG	2 cut(s)	432, 877
TseFI	GTSAC	1 cut(s)	472
TseI	GCWGC	6 cut(s)	202, 759, 794, 920, 923, 965
Tsp45I	GTSAC	1 cut(s)	472
TspDTI	ATGAA	5 cut(s)	9, 144, 286, 518, 964
TspRI	CASTG	2 cut(s)	432, 877
VspI	ATTAAT	1 cut(s)	596
XagI	CCTNNNNNAGG	1 cut(s)	375
XapI	RAATTY	1 cut(s)	855
XceI	RCATGY	1 cut(s)	34
XspI	CTAG	7 cut(s)	149, 206, 284, 641, 879, 984, 1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.