Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002306

Physical Location & Seq

Genomic Coordinates Reverse (-)

7143869 .. 7144967

Gene Structure 1099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G129600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

TCCATTGCTTCCATTCTTGTTGCTGGTGCTATTGGGGTCAGTTTGCCATTGCTAGGCAAGAAGATCCCAACTCTAAGGCCCGAAAACGACATCTTCTTCATGATCAAGGCCTTTGCAGCCGGCGTTATTCTTGCAACTGGGTTCATTCACATACTACCAGATGCATTTGACAACTTGACTTCACCATGCCTCAAAGAAAACCCATGGGGAAATTTCCCTTCACTGGGTCATCATGGTCATGGCTCTGAAGAATTGAGGTCACCAGAATTGATCAGGCATCGCGTCATTTCCCAAGTCTTGGAGCTGGGGATCCTAGTGCACTCGGTTATAGTTGGAATATCACTGGGTGCTTCCCAAAGCCCTGAAACAATAAAGCCTCTCATGGTGGCTTTGTCTTTCCATCAATTCTTTCAAGGCATGGGACTTGGTGGCTGCATCTCCCAGGCTAAATTCAAGTCTCGATCCGCAGCGATTATGGCGACAATTTTCTCACTCACTACCCCAGTAGGGATTGCAATTGGTATTGGCATATCAACCGGTTACAATGGCAATTGTCCCACTGCTCTAATTGTTGAATGGATTTTCAATGCTGCTGCAGCTGGGATATTAATTTACATGGCTCTCGTTGACCTACTGGCAGCAGATTTCATGAACCCCAGAATGCAAAGCAACATGAGGATCCAATCAGGAGCATATATTTCACTTCTTCTAGGGTCTGGCTGTATGTCTCTCTTAGCCAAGTGGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

250

Amino Acids

26.39

Weight (kDa)

8.39

Isoelectric Point (pI)

36.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12750
fragaria_vesca	FvH4_3g12900 FvH4_3g14490 FvH4_3g14490
malus_domestica	MD05G1236500.v1.1 MD05G1236600.v1.1 MD05G1247200.v1.1 MD10G1227800.v1.1
prunus_persica	Prupe.4G117200_v2.0.a1 Prupe.4G129600_v2.0.a1 Prupe.4G129700_v2.0.a1
pyrus_communis	pycom05g21350 pycom05g22310 pycom10g19130
rosa_chinensis	RchiOBHm_Chr5g0021001 RchiOBHm_Chr5g0023861 RchiOBHm_Chr5g0023871
rosa_laevigata	RLG00000032576 RLG00000032741 RLG00000032742
rosa_multiflora	Rmu_sc0001372.1_g000002 Rmu_sc0001372.1_g000005 Rmu_ssc0000027.1_g000003 Rmu_ssc0000244.1_g000011
rosa_roxburghii	Rroxscaffold_1G00055380 Rroxscaffold_1G00057480
rosa_rugosa	Rorug05G0063700 Rorug05G0079800 Rorug05G0079900
rosa_samantha	Rh5AG153300 Rh5AG169900 Rh5AG170000 Rh5BG153000 Rh5BG167200 Rh5BG167300 Rh5CG165600 Rh5CG182800 Rh5DG152400 Rh5DG169300
rosa_wichuraiana	Rw5G013620 Rw5G015360 Rw5G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	298
AccII	CGCG	1 cut(s)	282
AciI	CCGC	1 cut(s)	465
AclWI	GGATC	6 cut(s)	58, 304, 317, 456, 673, 686
AcsI	RAATTY	2 cut(s)	211, 449
AcuI	CTGAAG	1 cut(s)	267
AdeI	CACNNNGTG	1 cut(s)	347
AfiI	CCNNNNNNNGG	5 cut(s)	53, 223, 224, 298, 507
AgeI	ACCGGT	1 cut(s)	536
AgsI	TTSAA	4 cut(s)	413, 454, 575, 586
AjnI	CCWGG	1 cut(s)	441
AluBI	AGCT	2 cut(s)	304, 599
AluI	AGCT	2 cut(s)	304, 599
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	2 cut(s)	462, 732
Alw44I	GTGCAC	1 cut(s)	317
AlwI	GGATC	6 cut(s)	58, 304, 317, 456, 673, 686
AoxI	GGCC	2 cut(s)	77, 108
ApaLI	GTGCAC	1 cut(s)	317
ApeKI	GCWGC	7 cut(s)	116, 432, 467, 590, 593, 596, 638
ApoI	RAATTY	2 cut(s)	211, 449
AseI	ATTAAT	1 cut(s)	608
AsiGI	ACCGGT	1 cut(s)	536
AspS9I	GGNCC	1 cut(s)	78
AsuHPI	GGTGA	2 cut(s)	174, 252
BaeGI	GKGCMC	1 cut(s)	321
BamHI	GGATCC	2 cut(s)	309, 678
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	7 cut(s)	128, 419, 479, 577, 580, 608, 650
BccI	CCATC	1 cut(s)	408
BciT130I	CCWGG	1 cut(s)	443
BclI	TGATCA	2 cut(s)	102, 270
BcoDI	GTCTC	2 cut(s)	462, 732
BfaI	CTAG	3 cut(s)	53, 314, 710
BfmI	CTRYAG	1 cut(s)	594
BglI	GCCNNNNNGGC	1 cut(s)	743
BisI	GCNGC	7 cut(s)	117, 433, 468, 591, 594, 597, 639
BlsI	GCNGC	7 cut(s)	118, 434, 469, 592, 595, 598, 640
Bme1390I	CCNGG	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	2 cut(s)	311, 680
BmrFI	CCNGG	1 cut(s)	443
BmrI	ACTGGG	4 cut(s)	147, 233, 353, 497
BmsI	GCATC	3 cut(s)	151, 286, 444
BmuI	ACTGGG	4 cut(s)	147, 233, 353, 497
BsaJI	CCNNGG	2 cut(s)	203, 441
BsaWI	WCCGGW	1 cut(s)	536
Bsc4I	CCNNNNNNNGG	5 cut(s)	53, 223, 224, 298, 507
Bse118I	RCCGGY	2 cut(s)	119, 536
Bse1I	ACTGG	5 cut(s)	142, 228, 348, 503, 639
Bse3DI	GCAATG	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	443
BseDI	CCNNGG	2 cut(s)	203, 441
BseLI	CCNNNNNNNGG	5 cut(s)	53, 223, 224, 298, 507
BseMI	GCAATG	1 cut(s)	47
BseNI	ACTGG	5 cut(s)	142, 228, 348, 503, 639
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	7 cut(s)	128, 419, 479, 577, 580, 608, 650
BseYI	CCCAGC	2 cut(s)	304, 599
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	2 cut(s)	79, 110
BshTI	ACCGGT	1 cut(s)	536
BsiHKAI	GWGCWC	1 cut(s)	321
BsiSI	CCGG	2 cut(s)	120, 537
BslFI	GGGAC	2 cut(s)	435, 540
BslI	CCNNNNNNNGG	5 cut(s)	53, 223, 224, 298, 507
BsmAI	GTCTC	2 cut(s)	462, 732
BsmFI	GGGAC	2 cut(s)	435, 540
BsmI	GAATGC	1 cut(s)	666
BsnI	GGCC	2 cut(s)	79, 110
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	6 cut(s)	63, 102, 270, 309, 461, 678
Bsp19I	CCATGG	1 cut(s)	203
BspACI	CCGC	1 cut(s)	465
BspANI	GGCC	2 cut(s)	79, 110
BspFNI	CGCG	1 cut(s)	282
BspHI	TCATGA	2 cut(s)	99, 648
BspLI	GGNNCC	2 cut(s)	311, 680
BspMAI	CTGCAG	1 cut(s)	598
BspPI	GGATC	6 cut(s)	58, 304, 317, 456, 673, 686
BsrDI	GCAATG	1 cut(s)	47
BsrFI	RCCGGY	2 cut(s)	119, 536
BsrI	ACTGG	5 cut(s)	142, 228, 348, 503, 639
BssAI	RCCGGY	2 cut(s)	119, 536
BssECI	CCNNGG	2 cut(s)	203, 441
BssMI	GATC	6 cut(s)	63, 102, 270, 309, 461, 678
BssT1I	CCWWGG	1 cut(s)	203
Bst2UI	CCWGG	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	2 cut(s)	74, 733
BstDSI	CCRYGG	1 cut(s)	203
BstEII	GGTNACC	1 cut(s)	258
BstFNI	CGCG	1 cut(s)	282
BstKTI	GATC	6 cut(s)	66, 105, 273, 312, 464, 681
BstMAI	GTCTC	2 cut(s)	462, 732
BstMBI	GATC	6 cut(s)	63, 102, 270, 309, 461, 678
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 476, 596, 743
BstNI	CCWGG	1 cut(s)	443
BstPI	GGTNACC	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	441
BstSFI	CTRYAG	1 cut(s)	594
BstSLI	GKGCMC	1 cut(s)	321
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	7 cut(s)	128, 419, 479, 577, 580, 608, 650
BstX2I	RGATCY	3 cut(s)	63, 309, 678
BstYI	RGATCY	3 cut(s)	63, 309, 678
BsuRI	GGCC	2 cut(s)	79, 110
BtgI	CCRYGG	1 cut(s)	203
BtgZI	GCGATG	1 cut(s)	263
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	3 cut(s)	221, 341, 558
Cac8I	GCNNGC	1 cut(s)	121
CciI	TCATGA	2 cut(s)	99, 648
Cfr10I	RCCGGY	2 cut(s)	119, 536
Cfr13I	GGNCC	1 cut(s)	78
CseI	GACGC	1 cut(s)	271
CspAI	ACCGGT	1 cut(s)	536
DdeI	CTNAG	2 cut(s)	74, 733
DpnI	GATC	6 cut(s)	65, 104, 272, 311, 463, 680
DpnII	GATC	6 cut(s)	63, 102, 270, 309, 461, 678
DraIII	CACNNNGTG	1 cut(s)	347
Eco130I	CCWWGG	1 cut(s)	203
Eco147I	AGGCCT	1 cut(s)	110
Eco57I	CTGAAG	1 cut(s)	267
Eco91I	GGTNACC	1 cut(s)	258
EcoO65I	GGTNACC	1 cut(s)	258
EcoRII	CCWGG	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	203
EcoT22I	ATGCAT	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	203
FaqI	GGGAC	2 cut(s)	435, 540
FbaI	TGATCA	2 cut(s)	102, 270
Fnu4HI	GCNGC	7 cut(s)	117, 433, 468, 591, 594, 597, 639
Fsp4HI	GCNGC	7 cut(s)	117, 433, 468, 591, 594, 597, 639
FspBI	CTAG	3 cut(s)	53, 314, 710
GluI	GCNGC	7 cut(s)	117, 433, 468, 591, 594, 597, 639
GsaI	CCCAGC	2 cut(s)	308, 603
HaeIII	GGCC	2 cut(s)	79, 110
HapII	CCGG	2 cut(s)	120, 537
HgaI	GACGC	1 cut(s)	271
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HpaII	CCGG	2 cut(s)	120, 537
HphI	GGTGA	2 cut(s)	174, 252
Hpy166II	GTNNAC	2 cut(s)	319, 628
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	4 cut(s)	100, 459, 649, 687
Hpy8I	GTNNAC	2 cut(s)	319, 628
HpyAV	CCTTC	1 cut(s)	228
HpyCH4V	TGCA	8 cut(s)	116, 134, 164, 319, 435, 515, 596, 664
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 476, 596, 743
HpyF3I	CTNAG	2 cut(s)	74, 733
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
Ksp22I	TGATCA	2 cut(s)	102, 270
Kzo9I	GATC	6 cut(s)	63, 102, 270, 309, 461, 678
LmnI	GCTCC	2 cut(s)	301, 689
Lsp1109I	GCAGC	7 cut(s)	128, 419, 479, 577, 580, 608, 650
LweI	GCATC	3 cut(s)	151, 286, 444
MaeI	CTAG	3 cut(s)	53, 314, 710
MaeIII	GTNAC	2 cut(s)	258, 539
MalI	GATC	6 cut(s)	65, 104, 272, 311, 463, 680
MboI	GATC	6 cut(s)	63, 102, 270, 309, 461, 678
MboII	GAAGA	5 cut(s)	73, 85, 88, 260, 698
MfeI	CAATTG	2 cut(s)	516, 550
MflI	RGATCY	3 cut(s)	63, 309, 678
MhlI	GDGCHC	1 cut(s)	321
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	4 cut(s)	200, 249, 387, 669
Mph1103I	ATGCAT	1 cut(s)	166
MroNI	GCCGGC	1 cut(s)	119
MseI	TTAA	1 cut(s)	608
MslI	CAYNNNNRTG	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	599
MspI	CCGG	2 cut(s)	120, 537
MspR9I	CCNGG	1 cut(s)	443
MunI	CAATTG	2 cut(s)	516, 550
Mva1269I	GAATGC	1 cut(s)	666
MvaI	CCWGG	1 cut(s)	443
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	4 cut(s)	116, 476, 596, 743
NaeI	GCCGGC	1 cut(s)	121
NcoI	CCATGG	1 cut(s)	203
NdeII	GATC	6 cut(s)	63, 102, 270, 309, 461, 678
NgoMIV	GCCGGC	1 cut(s)	119
NlaIV	GGNNCC	2 cut(s)	311, 680
NmuCI	GTSAC	1 cut(s)	258
NsiI	ATGCAT	1 cut(s)	166
PagI	TCATGA	2 cut(s)	99, 648
PceI	AGGCCT	1 cut(s)	110
PctI	GAATGC	1 cut(s)	666
PdiI	GCCGGC	1 cut(s)	121
PflMI	CCANNNNNTGG	1 cut(s)	298
PinAI	ACCGGT	1 cut(s)	536
PkrI	GCNGC	7 cut(s)	118, 434, 469, 592, 595, 598, 640
PshBI	ATTAAT	1 cut(s)	608
Psp6I	CCWGG	1 cut(s)	441
PspEI	GGTNACC	1 cut(s)	258
PspFI	CCCAGC	2 cut(s)	304, 599
PspGI	CCWGG	1 cut(s)	441
PspN4I	GGNNCC	2 cut(s)	311, 680
PspPI	GGNCC	1 cut(s)	78
PstI	CTGCAG	1 cut(s)	598
PsuI	RGATCY	3 cut(s)	63, 309, 678
PvuII	CAGCTG	1 cut(s)	599
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	608
SatI	GCNGC	7 cut(s)	117, 433, 468, 591, 594, 597, 639
Sau3AI	GATC	6 cut(s)	63, 102, 270, 309, 461, 678
Sau96I	GGNCC	1 cut(s)	78
ScrFI	CCNGG	1 cut(s)	443
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	4 cut(s)	260, 306, 601, 633
SfaNI	GCATC	3 cut(s)	151, 286, 444
SfcI	CTRYAG	1 cut(s)	594
SmiMI	CAYNNNNRTG	1 cut(s)	237
SseBI	AGGCCT	1 cut(s)	110
SsiI	CCGC	1 cut(s)	465
SspMI	CTAG	3 cut(s)	53, 314, 710
StuI	AGGCCT	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	441
StyI	CCWWGG	1 cut(s)	203
TaqI	TCGA	1 cut(s)	460
Tru1I	TTAA	1 cut(s)	608
Tru9I	TTAA	1 cut(s)	608
TscAI	CASTG	3 cut(s)	228, 348, 565
TseFI	GTSAC	1 cut(s)	258
TseI	GCWGC	7 cut(s)	116, 432, 467, 590, 593, 596, 638
Tsp45I	GTSAC	1 cut(s)	258
TspDTI	ATGAA	4 cut(s)	88, 133, 637, 665
TspRI	CASTG	3 cut(s)	228, 348, 565
Van91I	CCANNNNNTGG	1 cut(s)	298
VneI	GTGCAC	1 cut(s)	317
VspI	ATTAAT	1 cut(s)	608
XapI	RAATTY	2 cut(s)	211, 449
XspI	CTAG	3 cut(s)	53, 314, 710
Zsp2I	ATGCAT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.