Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0002306

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG182800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGTTGAAGATAGTGGCATTAATTCTAATTCTTCTATTCCCCACTATAGTATTTGGCCACACACACAGGACCGGCCATGCCTGTGAATTTGAACACACACACGAACCCAACTATGAAGCACTAAAGTACAAGCTAGGCTCCATTGCTTCAATTCTTGTTTTTGGTGCTTTGGGGGTGAGTCTACCACTGCTAGGCAAGAAGACACCCATGCTAAGACCAGAGAACGATATCTTCTTCATTGTCAAGGCCTTTGCGGCCGGGGTGATTCTAGCGACTGCCTTCATTCACGTACTACCTGAGGCCTTTACGACCTTGACTTCACCATGTCTAAAAGAAAATCCATGGGGCAGATTCCCTTTCACAGGCTTTCTTTGCATGATGTCTGCCATCGGAACATTGATGGTTGATGCAATGGCAACTGGGTACTACAAAAGGTCAAGCTTGAAGTCATCCCAGGTGAGAATGGATGAAGAGAGCAGAGCTGGTCATGGTGCCACACAGGGTAGTAATGCTCATGACTCTGAAGAATTGAGATCAACATCAGAATTATTCAAGCACAGGGTCATTGCACAAGTGTTGGAGCTGGGGATTCTAGTCCATTCAGTTATAATTGGAATAACATTGGGTGCATCCCGAAACCCAGATACAATAAAGCCTCTCCTGGTGGCTTTGTCTTTCCATCAATTCTTTGAGGGCATCGGACTTGGTGGCTGCATCTCTCAGGCAAAGTTTAAGGTTCGGTCTGCAGCCATAATGGCGGCATTTTTCTCCCTTACAACCCCCATTGGGATTGCAGTTGGTACCGGAATTTCAAGCGTTTACAGTGAGACTAGCCCAACTGCTCTAATTGTTCAAGGGACTTTGGATTCAGCTGCAGCTGGGATTTTAATTTACATGGCTCTTGTTGACCTACTTGCAGCAGATTTCATGAGCCCTAGAATGCAAGGAAATATGAGGATTCAATTGGGGTCATATATCTCACTTCTTCTAGGGACTGGCTGTATGTCTCTCTTGGCGAAATGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

342

Amino Acids

36.77

Weight (kDa)

8.56

Isoelectric Point (pI)

32.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	42 - 339	1.4e-80	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12750
fragaria_vesca	FvH4_3g12900 FvH4_3g14490 FvH4_3g14490
malus_domestica	MD05G1236500.v1.1 MD05G1236600.v1.1 MD05G1247200.v1.1 MD10G1227800.v1.1
prunus_persica	Prupe.4G117200_v2.0.a1 Prupe.4G129600_v2.0.a1 Prupe.4G129700_v2.0.a1
pyrus_communis	pycom05g21350 pycom05g22310 pycom10g19130
rosa_chinensis	RchiOBHm_Chr5g0021001 RchiOBHm_Chr5g0023861 RchiOBHm_Chr5g0023871
rosa_laevigata	RLG00000032576 RLG00000032741 RLG00000032742
rosa_multiflora	Rmu_sc0001372.1_g000002 Rmu_sc0001372.1_g000005 Rmu_ssc0000027.1_g000003 Rmu_ssc0000244.1_g000011
rosa_roxburghii	Rroxscaffold_1G00055380 Rroxscaffold_1G00057480
rosa_rugosa	Rorug05G0063700 Rorug05G0079800 Rorug05G0079900
rosa_samantha	Rh5AG153300 Rh5AG169900 Rh5AG170000 Rh5BG153000 Rh5BG167200 Rh5BG167300 Rh5CG165600 Rh5CG182800 Rh5DG152400 Rh5DG169300
rosa_wichuraiana	Rw5G013620 Rw5G015360 Rw5G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	608
Acc65I	GGTACC	1 cut(s)	800
AccB1I	GGYRCC	2 cut(s)	491, 800
AccI	GTMKAC	1 cut(s)	181
AciI	CCGC	2 cut(s)	254, 758
AcoI	YGGCCR	3 cut(s)	55, 73, 255
AcsI	RAATTY	2 cut(s)	86, 807
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	4 cut(s)	128, 291, 425, 802
AfiI	CCNNNNNNNGG	3 cut(s)	191, 362, 786
AgsI	TTSAA	8 cut(s)	7, 92, 150, 445, 553, 813, 854, 962
AjnI	CCWGG	2 cut(s)	453, 660
AluBI	AGCT	6 cut(s)	133, 441, 482, 583, 872, 878
AluI	AGCT	6 cut(s)	133, 441, 482, 583, 872, 878
Alw26I	GTCTC	2 cut(s)	821, 1011
AoxI	GGCC	5 cut(s)	55, 73, 246, 255, 300
ApeKI	GCWGC	5 cut(s)	711, 746, 872, 875, 917
ApoI	RAATTY	2 cut(s)	86, 807
AseI	ATTAAT	1 cut(s)	20
Asp718I	GGTACC	1 cut(s)	800
AspS9I	GGNCC	1 cut(s)	69
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	4 cut(s)	187, 274, 312, 469
AvaII	GGWCC	1 cut(s)	69
AxyI	CCTNAGG	1 cut(s)	297
BalI	TGGCCA	1 cut(s)	57
BanI	GGYRCC	2 cut(s)	491, 800
BanII	GRGCYC	1 cut(s)	935
BbsI	GAAGAC	1 cut(s)	206
BbvI	GCAGC	5 cut(s)	698, 758, 859, 887, 929
BccI	CCATC	3 cut(s)	394, 395, 687
BciT130I	CCWGG	2 cut(s)	455, 662
BcnI	CCSGG	1 cut(s)	259
BcoDI	GTCTC	2 cut(s)	821, 1011
BfaI	CTAG	7 cut(s)	134, 191, 269, 593, 831, 936, 989
BfmI	CTRYAG	3 cut(s)	45, 744, 873
BglI	GCCNNNNNGGC	2 cut(s)	254, 755
BisI	GCNGC	7 cut(s)	255, 712, 747, 759, 873, 876, 918
BlsI	GCNGC	7 cut(s)	256, 713, 748, 760, 874, 877, 919
Bme1390I	CCNGG	3 cut(s)	259, 455, 662
Bme18I	GGWCC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	3 cut(s)	139, 493, 802
BmrFI	CCNGG	3 cut(s)	259, 455, 662
BmrI	ACTGGG	1 cut(s)	429
BmsI	GCATC	4 cut(s)	397, 638, 705, 723
BmuI	ACTGGG	1 cut(s)	429
BpiI	GAAGAC	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	259
BsaAI	YACGTR	1 cut(s)	289
BsaBI	GATNNNNATC	1 cut(s)	538
BsaJI	CCNNGG	3 cut(s)	258, 341, 453
BsaWI	WCCGGW	1 cut(s)	803
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 362, 786
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	2 cut(s)	424, 1000
Bse21I	CCTNAGG	1 cut(s)	297
Bse3DI	GCAATG	3 cut(s)	141, 417, 564
Bse8I	GATNNNNATC	1 cut(s)	538
BseBI	CCWGG	2 cut(s)	455, 662
BseDI	CCNNGG	3 cut(s)	258, 341, 453
BseGI	GGATG	3 cut(s)	449, 472, 629
BseJI	GATNNNNATC	1 cut(s)	538
BseLI	CCNNNNNNNGG	3 cut(s)	191, 362, 786
BseMI	GCAATG	3 cut(s)	141, 417, 564
BseMII	CTCAG	2 cut(s)	288, 734
BseNI	ACTGG	2 cut(s)	424, 1000
BseX3I	CGGCCG	1 cut(s)	255
BseXI	GCAGC	5 cut(s)	698, 758, 859, 887, 929
BseYI	CCCAGC	2 cut(s)	583, 878
Bsh1285I	CGRYCG	1 cut(s)	258
BshFI	GGCC	5 cut(s)	57, 75, 248, 257, 302
BshNI	GGYRCC	2 cut(s)	491, 800
BsiEI	CGRYCG	1 cut(s)	258
BsiSI	CCGG	3 cut(s)	72, 258, 804
BslFI	GGGAC	2 cut(s)	871, 1006
BslI	CCNNNNNNNGG	3 cut(s)	191, 362, 786
BsmAI	GTCTC	2 cut(s)	821, 1011
BsmFI	GGGAC	2 cut(s)	871, 1006
BsmI	GAATGC	1 cut(s)	945
BsnI	GGCC	5 cut(s)	57, 75, 248, 257, 302
Bsp1286I	GDGCHC	1 cut(s)	935
Bsp143I	GATC	1 cut(s)	533
Bsp19I	CCATGG	1 cut(s)	341
BspACI	CCGC	2 cut(s)	254, 758
BspANI	GGCC	5 cut(s)	57, 75, 248, 257, 302
BspCNI	CTCAG	2 cut(s)	289, 733
BspHI	TCATGA	2 cut(s)	514, 927
BspLI	GGNNCC	3 cut(s)	139, 493, 802
BspMAI	CTGCAG	2 cut(s)	748, 877
BspT107I	GGYRCC	2 cut(s)	491, 800
BsrDI	GCAATG	3 cut(s)	141, 417, 564
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	2 cut(s)	424, 1000
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	3 cut(s)	258, 341, 453
BssMI	GATC	1 cut(s)	533
BssT1I	CCWWGG	1 cut(s)	341
Bst2UI	CCWGG	2 cut(s)	455, 662
Bst4CI	ACNGT	1 cut(s)	824
Bst6I	CTCTTC	1 cut(s)	465
BstBAI	YACGTR	1 cut(s)	289
BstDEI	CTNAG	3 cut(s)	212, 297, 720
BstDSI	CCRYGG	1 cut(s)	341
BstENI	CCTNNNNNAGG	1 cut(s)	360
BstF5I	GGATG	3 cut(s)	449, 472, 629
BstKTI	GATC	1 cut(s)	536
BstMAI	GTCTC	2 cut(s)	821, 1011
BstMBI	GATC	1 cut(s)	533
BstMCI	CGRYCG	1 cut(s)	258
BstMWI	GCNNNNNNNGC	4 cut(s)	254, 372, 755, 1022
BstNI	CCWGG	2 cut(s)	455, 662
BstSCI	CCNGG	3 cut(s)	257, 453, 660
BstSFI	CTRYAG	3 cut(s)	45, 744, 873
BstV1I	GCAGC	5 cut(s)	698, 758, 859, 887, 929
BstV2I	GAAGAC	1 cut(s)	206
BstZI	CGGCCG	1 cut(s)	255
Bsu36I	CCTNAGG	1 cut(s)	297
BsuRI	GGCC	5 cut(s)	57, 75, 248, 257, 302
BtgI	CCRYGG	1 cut(s)	341
BtsCI	GGATG	3 cut(s)	449, 472, 629
BtsI	GCAGTG	1 cut(s)	185
BtsIMutI	CAGTG	2 cut(s)	185, 829
CciI	TCATGA	2 cut(s)	514, 927
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	69
Csp6I	GTAC	4 cut(s)	127, 290, 424, 801
CviAII	CATG	9 cut(s)	77, 208, 324, 342, 376, 488, 515, 895, 928
CviQI	GTAC	4 cut(s)	127, 290, 424, 801
DdeI	CTNAG	3 cut(s)	212, 297, 720
DpnI	GATC	1 cut(s)	535
DpnII	GATC	1 cut(s)	533
EaeI	YGGCCR	3 cut(s)	55, 73, 255
EagI	CGGCCG	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
EclXI	CGGCCG	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	341
Eco147I	AGGCCT	2 cut(s)	248, 302
Eco24I	GRGCYC	1 cut(s)	935
Eco32I	GATATC	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	69
Eco52I	CGGCCG	1 cut(s)	255
Eco57I	CTGAAG	1 cut(s)	543
Eco81I	CCTNAGG	1 cut(s)	297
EcoNI	CCTNNNNNAGG	1 cut(s)	360
EcoRII	CCWGG	2 cut(s)	453, 660
EcoRV	GATATC	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	341
EcoT38I	GRGCYC	1 cut(s)	935
ErhI	CCWWGG	1 cut(s)	341
FaeI	CATG	9 cut(s)	80, 211, 327, 345, 379, 491, 518, 898, 931
FaqI	GGGAC	2 cut(s)	871, 1006
FatI	CATG	9 cut(s)	76, 207, 323, 341, 375, 487, 514, 894, 927
FblI	GTMKAC	1 cut(s)	181
Fnu4HI	GCNGC	7 cut(s)	255, 712, 747, 759, 873, 876, 918
FokI	GGATG	3 cut(s)	436, 479, 616
FriOI	GRGCYC	1 cut(s)	935
Fsp4HI	GCNGC	7 cut(s)	255, 712, 747, 759, 873, 876, 918
FspBI	CTAG	7 cut(s)	134, 191, 269, 593, 831, 936, 989
GluI	GCNGC	7 cut(s)	255, 712, 747, 759, 873, 876, 918
GsaI	CCCAGC	2 cut(s)	587, 882
HaeIII	GGCC	5 cut(s)	57, 75, 248, 257, 302
HapII	CCGG	3 cut(s)	72, 258, 804
Hin1II	CATG	9 cut(s)	80, 211, 327, 345, 379, 491, 518, 898, 931
HincII	GTYRAC	1 cut(s)	907
HindII	GTYRAC	1 cut(s)	907
HindIII	AAGCTT	1 cut(s)	439
HinfI	GANTC	7 cut(s)	178, 265, 351, 518, 589, 866, 958
HpaII	CCGG	3 cut(s)	72, 258, 804
HphI	GGTGA	4 cut(s)	187, 274, 312, 469
Hpy166II	GTNNAC	3 cut(s)	182, 820, 907
Hpy188I	TCNGA	4 cut(s)	392, 523, 544, 701
Hpy188III	TCNNGA	3 cut(s)	515, 633, 928
Hpy8I	GTNNAC	3 cut(s)	182, 820, 907
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	1 cut(s)	824
HpyCH4IV	ACGT	1 cut(s)	288
HpyF10VI	GCNNNNNNNGC	4 cut(s)	254, 372, 755, 1022
HpyF3I	CTNAG	3 cut(s)	212, 297, 720
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	9 cut(s)	80, 211, 327, 345, 379, 491, 518, 898, 931
KpnI	GGTACC	1 cut(s)	804
Kzo9I	GATC	1 cut(s)	533
LmnI	GCTCC	2 cut(s)	143, 580
Lsp1109I	GCAGC	5 cut(s)	698, 758, 859, 887, 929
LweI	GCATC	4 cut(s)	397, 638, 705, 723
MaeI	CTAG	7 cut(s)	134, 191, 269, 593, 831, 936, 989
MaeII	ACGT	1 cut(s)	288
MalI	GATC	1 cut(s)	535
MboI	GATC	1 cut(s)	533
MboII	GAAGA	8 cut(s)	19, 23, 211, 223, 226, 482, 536, 977
MfeI	CAATTG	1 cut(s)	962
MhlI	GDGCHC	1 cut(s)	935
MlsI	TGGCCA	1 cut(s)	57
MluNI	TGGCCA	1 cut(s)	57
MlyI	GAGTC	2 cut(s)	187, 512
MmeI	TCCRAC	1 cut(s)	558
MnlI	CCTC	4 cut(s)	292, 666, 685, 948
Mox20I	TGGCCA	1 cut(s)	57
MscI	TGGCCA	1 cut(s)	57
MseI	TTAA	3 cut(s)	20, 732, 887
MslI	CAYNNNNRTG	1 cut(s)	81
Msp20I	TGGCCA	1 cut(s)	57
MspA1I	CMGCKG	2 cut(s)	872, 878
MspI	CCGG	3 cut(s)	72, 258, 804
MspR9I	CCNGG	3 cut(s)	259, 455, 662
MunI	CAATTG	1 cut(s)	962
Mva1269I	GAATGC	1 cut(s)	945
MvaI	CCWGG	2 cut(s)	455, 662
MwoI	GCNNNNNNNGC	4 cut(s)	254, 372, 755, 1022
NciI	CCSGG	1 cut(s)	259
NcoI	CCATGG	1 cut(s)	341
NdeII	GATC	1 cut(s)	533
NlaIII	CATG	9 cut(s)	80, 211, 327, 345, 379, 491, 518, 898, 931
NlaIV	GGNNCC	3 cut(s)	139, 493, 802
PagI	TCATGA	2 cut(s)	514, 927
PceI	AGGCCT	2 cut(s)	248, 302
PctI	GAATGC	1 cut(s)	945
PfeI	GAWTC	5 cut(s)	265, 351, 589, 866, 958
PkrI	GCNGC	7 cut(s)	256, 713, 748, 760, 874, 877, 919
PleI	GAGTC	2 cut(s)	186, 512
PpsI	GAGTC	2 cut(s)	186, 512
Ppu21I	YACGTR	1 cut(s)	289
PshBI	ATTAAT	1 cut(s)	20
PsiI	TTATAA	1 cut(s)	608
Psp6I	CCWGG	2 cut(s)	453, 660
PspFI	CCCAGC	2 cut(s)	583, 878
PspGI	CCWGG	2 cut(s)	453, 660
PspN4I	GGNNCC	3 cut(s)	139, 493, 802
PspPI	GGNCC	1 cut(s)	69
PstI	CTGCAG	2 cut(s)	748, 877
PvuII	CAGCTG	2 cut(s)	872, 878
RsaI	GTAC	4 cut(s)	128, 291, 425, 802
RsaNI	GTAC	4 cut(s)	127, 290, 424, 801
RseI	CAYNNNNRTG	1 cut(s)	81
SaqAI	TTAA	3 cut(s)	20, 732, 887
SatI	GCNGC	7 cut(s)	255, 712, 747, 759, 873, 876, 918
Sau3AI	GATC	1 cut(s)	533
Sau96I	GGNCC	1 cut(s)	69
SchI	GAGTC	2 cut(s)	187, 512
ScrFI	CCNGG	3 cut(s)	259, 455, 662
SduI	GDGCHC	1 cut(s)	935
SfaNI	GCATC	4 cut(s)	397, 638, 705, 723
SfcI	CTRYAG	3 cut(s)	45, 744, 873
SfiI	GGCCNNNNNGGCC	1 cut(s)	254
SinI	GGWCC	1 cut(s)	69
SmiMI	CAYNNNNRTG	1 cut(s)	81
SseBI	AGGCCT	2 cut(s)	248, 302
SsiI	CCGC	2 cut(s)	254, 758
SspMI	CTAG	7 cut(s)	134, 191, 269, 593, 831, 936, 989
StuI	AGGCCT	2 cut(s)	248, 302
StyD4I	CCNGG	3 cut(s)	257, 453, 660
StyI	CCWWGG	1 cut(s)	341
TaaI	ACNGT	1 cut(s)	824
TaiI	ACGT	1 cut(s)	291
TaqII	GACCGA	1 cut(s)	729
TatI	WGTACW	1 cut(s)	126
TauI	GCSGC	2 cut(s)	257, 761
TfiI	GAWTC	5 cut(s)	265, 351, 589, 866, 958
Tru1I	TTAA	3 cut(s)	20, 732, 887
Tru9I	TTAA	3 cut(s)	20, 732, 887
TscAI	CASTG	2 cut(s)	192, 829
TseI	GCWGC	5 cut(s)	711, 746, 872, 875, 917
TspDTI	ATGAA	5 cut(s)	129, 226, 271, 483, 916
TspRI	CASTG	2 cut(s)	192, 829
VpaK11BI	GGWCC	1 cut(s)	69
VspI	ATTAAT	1 cut(s)	20
XagI	CCTNNNNNAGG	1 cut(s)	360
XapI	RAATTY	2 cut(s)	86, 807
XmiI	GTMKAC	1 cut(s)	181
XspI	CTAG	7 cut(s)	134, 191, 269, 593, 831, 936, 989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.