Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000027.1

Orthogroup ID

OG0002306

Physical Location & Seq

Genomic Coordinates Forward (+)

11936 .. 13092

Gene Structure 1157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000027.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgctaagaccagagaacgatatcttcttcattgtcaaggcttttgcggcaggggtgattctagcgactgccttcattcacgtactacctgaggcctttacgaccttgacttcaccatgcctaaatgaaaatccgtggggcagattccctttcacaggctttctttgcatgatgtctgctatcggaacattgatggttgatgcaatggcaactggatactacaaaaggtcaagcttgaagtcatcccaggtgagaatggatgaagagagcagagctggtcatggtgccacacagggtagtaatcctcaagactctgaagaattgagatcatcatcagaattattcaagcacagggtcattgcgcaagcgcaattcaagtctctgtctgaagccataatggtggcatttttctcccttacaacccccattggaattgcaattggtatcggaatatcaaatgtttacagtgagactagcccaactgctctaattgttcaagggactttgaattcagctgcagctggaattttaatttacatggctcttgttgacctacttgcagcagatttcatgagccctagaatgcaaggaaatatgaggattcaattggggtcctatatttcgcttcttctagggactggctgtatgtctctcttggcaaaatgggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

223

Amino Acids

24.06

Weight (kDa)

6.29

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12750
fragaria_vesca	FvH4_3g12900 FvH4_3g14490 FvH4_3g14490
malus_domestica	MD05G1236500.v1.1 MD05G1236600.v1.1 MD05G1247200.v1.1 MD10G1227800.v1.1
prunus_persica	Prupe.4G117200_v2.0.a1 Prupe.4G129600_v2.0.a1 Prupe.4G129700_v2.0.a1
pyrus_communis	pycom05g21350 pycom05g22310 pycom10g19130
rosa_chinensis	RchiOBHm_Chr5g0021001 RchiOBHm_Chr5g0023861 RchiOBHm_Chr5g0023871
rosa_laevigata	RLG00000032576 RLG00000032741 RLG00000032742
rosa_multiflora	Rmu_sc0001372.1_g000002 Rmu_sc0001372.1_g000005 Rmu_ssc0000027.1_g000003 Rmu_ssc0000244.1_g000011
rosa_roxburghii	Rroxscaffold_1G00055380 Rroxscaffold_1G00057480
rosa_rugosa	Rorug05G0063700 Rorug05G0079800 Rorug05G0079900
rosa_samantha	Rh5AG153300 Rh5AG169900 Rh5AG170000 Rh5BG153000 Rh5BG167200 Rh5BG167300 Rh5CG165600 Rh5CG182800 Rh5DG152400 Rh5DG169300
rosa_wichuraiana	Rw5G013620 Rw5G015360 Rw5G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	363
AccB1I	GGYRCC	1 cut(s)	284
AciI	CCGC	1 cut(s)	47
AcsI	RAATTY	2 cut(s)	508, 525
AcuI	CTGAAG	2 cut(s)	336, 408
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	6 cut(s)	238, 346, 376, 497, 508, 605
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	4 cut(s)	234, 275, 515, 521
AluI	AGCT	4 cut(s)	234, 275, 515, 521
Alw26I	GTCTC	3 cut(s)	384, 464, 654
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	3 cut(s)	515, 518, 560
ApoI	RAATTY	2 cut(s)	508, 525
AspLEI	GCGC	2 cut(s)	364, 370
AspS9I	GGNCC	1 cut(s)	612
AsuHPI	GGTGA	3 cut(s)	67, 105, 262
AvaII	GGWCC	1 cut(s)	612
AxyI	CCTNAGG	1 cut(s)	90
BanI	GGYRCC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	578
BbvI	GCAGC	3 cut(s)	502, 530, 572
BccI	CCATC	1 cut(s)	187
BciT130I	CCWGG	1 cut(s)	248
BciVI	GTATCC	1 cut(s)	209
BcoDI	GTCTC	3 cut(s)	384, 464, 654
BfaI	CTAG	4 cut(s)	62, 474, 579, 632
BfmI	CTRYAG	1 cut(s)	516
BfuI	GTATCC	1 cut(s)	209
BisI	GCNGC	4 cut(s)	48, 516, 519, 561
BlsI	GCNGC	4 cut(s)	49, 517, 520, 562
Bme1390I	CCNGG	1 cut(s)	248
Bme18I	GGWCC	1 cut(s)	612
BmgT120I	GGNCC	1 cut(s)	612
BmiI	GGNNCC	2 cut(s)	286, 613
BmrFI	CCNGG	1 cut(s)	248
BmsI	GCATC	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	291
BsaAI	YACGTR	1 cut(s)	82
BsaBI	GATNNNNATC	1 cut(s)	331
BsaJI	CCNNGG	2 cut(s)	134, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	2 cut(s)	217, 643
Bse21I	CCTNAGG	1 cut(s)	90
Bse3DI	GCAATG	2 cut(s)	210, 357
Bse8I	GATNNNNATC	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	2 cut(s)	134, 246
BseGI	GGATG	2 cut(s)	242, 265
BseJI	GATNNNNATC	1 cut(s)	331
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMI	GCAATG	2 cut(s)	210, 357
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	2 cut(s)	217, 643
BseXI	GCAGC	3 cut(s)	502, 530, 572
BshFI	GGCC	1 cut(s)	95
BshNI	GGYRCC	1 cut(s)	284
BslFI	GGGAC	2 cut(s)	514, 649
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	3 cut(s)	384, 464, 654
BsmFI	GGGAC	2 cut(s)	514, 649
BsmI	GAATGC	1 cut(s)	588
BsnI	GGCC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	578
Bsp143I	GATC	1 cut(s)	326
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	1 cut(s)	82
BspHI	TCATGA	1 cut(s)	570
BspLI	GGNNCC	2 cut(s)	286, 613
BspMAI	CTGCAG	1 cut(s)	520
BspT107I	GGYRCC	1 cut(s)	284
BsrDI	GCAATG	2 cut(s)	210, 357
BsrI	ACTGG	2 cut(s)	217, 643
BssECI	CCNNGG	2 cut(s)	134, 246
BssMI	GATC	1 cut(s)	326
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	1 cut(s)	467
Bst6I	CTCTTC	1 cut(s)	258
BstBAI	YACGTR	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	2 cut(s)	5, 90
BstDSI	CCRYGG	1 cut(s)	134
BstENI	CCTNNNNNAGG	1 cut(s)	153
BstF5I	GGATG	2 cut(s)	242, 265
BstHHI	GCGC	2 cut(s)	364, 370
BstKTI	GATC	1 cut(s)	329
BstMAI	GTCTC	3 cut(s)	384, 464, 654
BstMBI	GATC	1 cut(s)	326
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 165, 665
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	246
BstSFI	CTRYAG	1 cut(s)	516
BstV1I	GCAGC	3 cut(s)	502, 530, 572
BstXI	CCANNNNNNTGG	1 cut(s)	400
Bsu36I	CCTNAGG	1 cut(s)	90
BsuI	GTATCC	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	134
BtsCI	GGATG	2 cut(s)	242, 265
BtsIMutI	CAGTG	1 cut(s)	472
Cac8I	GCNNGC	1 cut(s)	366
CciI	TCATGA	1 cut(s)	570
CfoI	GCGC	2 cut(s)	364, 370
Cfr13I	GGNCC	1 cut(s)	612
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	5 cut(s)	117, 169, 281, 538, 571
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	2 cut(s)	5, 90
DpnI	GATC	1 cut(s)	328
DpnII	GATC	1 cut(s)	326
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco147I	AGGCCT	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	578
Eco32I	GATATC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	612
Eco57I	CTGAAG	2 cut(s)	336, 408
Eco81I	CCTNAGG	1 cut(s)	90
EcoNI	CCTNNNNNAGG	1 cut(s)	153
EcoO109I	RGGNCCY	1 cut(s)	612
EcoRI	GAATTC	1 cut(s)	508
EcoRII	CCWGG	1 cut(s)	246
EcoRV	GATATC	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	578
FaeI	CATG	5 cut(s)	120, 172, 284, 541, 574
FaiI	YATR	9 cut(s)	118, 170, 282, 395, 539, 572, 596, 618, 647
FaqI	GGGAC	2 cut(s)	514, 649
FatI	CATG	5 cut(s)	116, 168, 280, 537, 570
Fnu4HI	GCNGC	4 cut(s)	48, 516, 519, 561
FokI	GGATG	2 cut(s)	229, 272
FriOI	GRGCYC	1 cut(s)	578
Fsp4HI	GCNGC	4 cut(s)	48, 516, 519, 561
FspBI	CTAG	4 cut(s)	62, 474, 579, 632
FspI	TGCGCA	1 cut(s)	363
GlaI	GCGC	2 cut(s)	363, 369
GluI	GCNGC	4 cut(s)	48, 516, 519, 561
HaeIII	GGCC	1 cut(s)	95
HhaI	GCGC	2 cut(s)	364, 370
Hin1II	CATG	5 cut(s)	120, 172, 284, 541, 574
Hin6I	GCGC	2 cut(s)	362, 368
HinP1I	GCGC	2 cut(s)	362, 368
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HindIII	AAGCTT	1 cut(s)	232
HinfI	GANTC	4 cut(s)	58, 144, 311, 601
HphI	GGTGA	3 cut(s)	67, 105, 262
Hpy166II	GTNNAC	2 cut(s)	463, 550
Hpy188I	TCNGA	5 cut(s)	185, 316, 337, 388, 449
Hpy188III	TCNNGA	2 cut(s)	308, 571
Hpy8I	GTNNAC	2 cut(s)	463, 550
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	467
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	6 cut(s)	168, 203, 437, 518, 560, 586
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 165, 665
HpyF3I	CTNAG	2 cut(s)	5, 90
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	5 cut(s)	120, 172, 284, 541, 574
HspAI	GCGC	2 cut(s)	362, 368
Kzo9I	GATC	1 cut(s)	326
Lsp1109I	GCAGC	3 cut(s)	502, 530, 572
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	4 cut(s)	62, 474, 579, 632
MaeII	ACGT	1 cut(s)	81
MalI	GATC	1 cut(s)	328
MboI	GATC	1 cut(s)	326
MboII	GAAGA	5 cut(s)	16, 19, 275, 329, 620
MfeI	CAATTG	2 cut(s)	438, 605
MhlI	GDGCHC	1 cut(s)	578
MlyI	GAGTC	1 cut(s)	305
MnlI	CCTC	3 cut(s)	85, 315, 591
MseI	TTAA	1 cut(s)	530
MslI	CAYNNNNRTG	1 cut(s)	398
MspA1I	CMGCKG	2 cut(s)	515, 521
MspR9I	CCNGG	1 cut(s)	248
MunI	CAATTG	2 cut(s)	438, 605
Mva1269I	GAATGC	1 cut(s)	588
MvaI	CCWGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	3 cut(s)	47, 165, 665
NdeII	GATC	1 cut(s)	326
NlaIII	CATG	5 cut(s)	120, 172, 284, 541, 574
NlaIV	GGNNCC	2 cut(s)	286, 613
NsbI	TGCGCA	1 cut(s)	363
PagI	TCATGA	1 cut(s)	570
PceI	AGGCCT	1 cut(s)	95
PctI	GAATGC	1 cut(s)	588
PfeI	GAWTC	3 cut(s)	58, 144, 601
PkrI	GCNGC	4 cut(s)	49, 517, 520, 562
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
Ppu21I	YACGTR	1 cut(s)	82
PpuMI	RGGWCCY	1 cut(s)	612
Psp5II	RGGWCCY	1 cut(s)	612
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	2 cut(s)	286, 613
PspPI	GGNCC	1 cut(s)	612
PspPPI	RGGWCCY	1 cut(s)	612
PstI	CTGCAG	1 cut(s)	520
PvuII	CAGCTG	2 cut(s)	515, 521
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	530
SatI	GCNGC	4 cut(s)	48, 516, 519, 561
Sau3AI	GATC	1 cut(s)	326
Sau96I	GGNCC	1 cut(s)	612
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	248
SduI	GDGCHC	1 cut(s)	578
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	516
SinI	GGWCC	1 cut(s)	612
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	306
SmoI	CTYRAG	1 cut(s)	306
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	1 cut(s)	47
SspMI	CTAG	4 cut(s)	62, 474, 579, 632
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	467
TaiI	ACGT	1 cut(s)	84
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	3 cut(s)	58, 144, 601
Tru1I	TTAA	1 cut(s)	530
Tru9I	TTAA	1 cut(s)	530
TscAI	CASTG	1 cut(s)	472
TseI	GCWGC	3 cut(s)	515, 518, 560
TspDTI	ATGAA	5 cut(s)	19, 64, 141, 276, 559
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	1 cut(s)	472
VpaK11BI	GGWCC	1 cut(s)	612
XagI	CCTNNNNNAGG	1 cut(s)	153
XapI	RAATTY	2 cut(s)	508, 525
XspI	CTAG	4 cut(s)	62, 474, 579, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.